Rmu_sc0008968.1_g000004

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008968.1
OG0000145
Physical Location & Seq
Reverse (-)
11566 .. 14037
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008968.1_g000004.1.cds

Sequence Viewer

Length: 1887 bp
atggagaaccagaacatcgagtccatggagatggataagtccggcccttcttcttcgaacgaggagacctctttctctgcgttcttcactgaaaaacgacaactaaagttgcaagacgtctggccggagctggagtcgtctttagatgcctatggcatttcatgcacaattaatcttccccagcgctcagtaacaatctcaaggaccccaacgaccaagggtcgaaactattacgacaaggccaagagtgtcgtcgagcttcttgcaacaactcaagtgccaccgcatctggcactggaagtattgaacggaaattggagatttcatactctaattaagactgggaatcaagaaggtgggttctgctccaagttcggcatcagcccggaccagtttgctaaacgaagggactggcttgccggatccctagaggcaatttcggcactgacgctttgtcatctttctgttaatgaaaacactgctgctgcggtgggttcggctgcttcggtattagagtttaggaggattgtggaaaactgcattgttagtgatgtgaatccggcagagtctaacaacaagattaaaaagtttttgagttataaaaagcacgtgctgcagaaacgtggggtggattacacggcagtattggagaagtctggcatgagtgaagtgacatcttttggtgcgtacgtcgctaaaggtcttagtaggaataaagaggtggaccaagcctggccttttgtggagtcgtttttagaacagtatggcatttcatgcacattgcatagggttcttcgttccatgacattttcgactaccagagtgaccaaggatccagatgttatggacagtgttggtgctcttcttgaagttttgggaagtactagtgttccggggtcgaaggtgatacagatattggacggccggctgcagtatgaattcatcaagaccgggtttgaaaagggtgggctctgctcgaaatttgatgggatcgagaaggagcttgctaagaacaagcaaagattgaagcgcaacgcaaagaaccttggagacttgttggtatgtgatgtgtatattgacagaagcagtgtcgttgtagcggggagttgtgcgacagggttgaaggaaatgaggtcaattgtggaacgatgtctggttaaaaatgaagaccctgcaacagcggtgaggaggctaagatcgtgtaataagaaacagggtagtttgagattatctgatgagaagcaggtcagtttgatgaagaagcttgaggggttaggccaaaagcctaaaccccagcccaaatctagaagttactggactagggtagaaacccgagcccaacaaactgaagcccaagatggtaatcagccaagaagatcacccacagcccatcaacccggtttgggcccagtcctcaatctgctcccatccctcagcatgcgtcactttctggccgagtttggtctgatccctgccgccaacactcctcgtcgcgatccacaccaccatggcagcgatcaaaaaccgccacgagcacatcgccgacctgcatcaccaccaaacaaacacagtccccgatcctgttcctcacaaccccgcaccgccatggatcgaaaaccccgtcggcgccgtcggtccaagaagacctccacggggattgacaaccagcctgtaacgacaccgcccaccgccgccgcctccagcccagccaaaccaaaactgacagagccaagaacaaacctctccgatagagtcccaagggcagtagctatcgatctcccgtccggcagcacatcccaagacggcagtgaggccggaggccaccccgacatccgggtgcagccggacgagactgatgttgcaacaaacggcgaacctcggccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

628

Amino Acids

69.29

Weight (kDa)

9.58

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
AatII GACGTC 1 cut(s) 120
Acc36I ACCTGC 2 cut(s) 1234, 1555
AccB1I GGYRCC 1 cut(s) 1626
AccII CGCG 1 cut(s) 1494
AclWI GGATC 9 cut(s) 417, 430, 827, 840, 998, 1462, 1490, 1572, 1617
AcoI YGGCCR 3 cut(s) 122, 922, 1452
AcsI RAATTY 2 cut(s) 938, 980
AcuI CTGAAG 1 cut(s) 1368
AcvI CACGTG 1 cut(s) 610
AcyI GRCGYC 2 cut(s) 117, 1627
AfaI GTAC 2 cut(s) 689, 883
AfeI AGCGCT 1 cut(s) 185
AfiI CCNNNNNNNGG 3 cut(s) 1403, 1653, 1833
AgsI TTSAA 5 cut(s) 307, 869, 959, 1027, 1123
AhdI GACNNNNNGTC 2 cut(s) 219, 453
AhlI ACTAGT 1 cut(s) 884
AjnI CCWGG 1 cut(s) 731
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 5 cut(s) 130, 259, 1003, 1264, 1769
AluI AGCT 5 cut(s) 130, 259, 1003, 1264, 1769
Alw21I GWGCWC 2 cut(s) 862, 1537
Alw26I GTCTC 3 cut(s) 59, 1044, 1844
AlwI GGATC 9 cut(s) 417, 430, 827, 840, 998, 1462, 1490, 1572, 1617
Ama87I CYCGRG 1 cut(s) 1332
Aor51HI AGCGCT 1 cut(s) 185
ApaI GGGCCC 1 cut(s) 1409
ApeKI GCWGC 8 cut(s) 482, 485, 500, 613, 928, 1512, 1788, 1840
ApoI RAATTY 2 cut(s) 938, 980
ArsI GACNNNNNNTTYG 2 cut(s) 1606, 1638
AseI ATTAAT 1 cut(s) 171
AspLEI GCGC 3 cut(s) 186, 1032, 1629
AspS9I GGNCC 7 cut(s) 44, 204, 388, 724, 1405, 1406, 1635
AsuC2I CCSGG 5 cut(s) 386, 894, 952, 1398, 1835
AsuHPI GGTGA 4 cut(s) 916, 1195, 1371, 1545
AsuII TTCGAA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 1332
AvaII GGWCC 4 cut(s) 204, 388, 724, 1635
BaeGI GKGCMC 1 cut(s) 1409
BamHI GGATCC 2 cut(s) 422, 832
BanI GGYRCC 1 cut(s) 1626
BanII GRGCYC 3 cut(s) 972, 1339, 1409
BauI CACGAG 1 cut(s) 1530
BbrPI CACGTG 1 cut(s) 610
BbsI GAAGAC 2 cut(s) 1173, 1649
Bbv12I GWGCWC 2 cut(s) 862, 1537
BbvCI CCTCAGC 1 cut(s) 1433
BbvI GCAGC 8 cut(s) 469, 472, 487, 600, 915, 1524, 1800, 1852
BccI CCATC 5 cut(s) 25, 980, 1352, 1398, 1435
BceAI ACGGC 5 cut(s) 654, 937, 1614, 1819, 1885
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 1 cut(s) 733
BcnI CCSGG 5 cut(s) 386, 894, 952, 1398, 1835
BcoDI GTCTC 3 cut(s) 59, 1044, 1844
BcuI ACTAGT 1 cut(s) 884
BfaI CTAG 4 cut(s) 428, 885, 1305, 1320
BfmI CTRYAG 2 cut(s) 614, 929
BfoI RGCGCY 2 cut(s) 187, 1630
BfuAI ACCTGC 2 cut(s) 1234, 1555
BmcAI AGTACT 1 cut(s) 883
Bme1390I CCNGG 6 cut(s) 386, 733, 894, 952, 1398, 1835
Bme18I GGWCC 4 cut(s) 204, 388, 724, 1635
BmeRI GACNNNNNGTC 2 cut(s) 219, 453
BmeT110I CYCGRG 1 cut(s) 1332
BmgT120I GGNCC 7 cut(s) 44, 204, 388, 724, 1405, 1406, 1635
BmiI GGNNCC 5 cut(s) 206, 424, 834, 1407, 1628
BmrFI CCNGG 6 cut(s) 386, 733, 894, 952, 1398, 1835
BmrI ACTGGG 2 cut(s) 351, 1403
BmsI GCATC 4 cut(s) 136, 295, 387, 1559
BmuI ACTGGG 2 cut(s) 351, 1403
BpiI GAAGAC 2 cut(s) 1173, 1649
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpmI CTGGAG 2 cut(s) 152, 1684
Bpu10I CCTNAGC 1 cut(s) 1433
Bpu14I TTCGAA 1 cut(s) 56
BpuEI CTTGAG 3 cut(s) 184, 258, 1286
BpuMI CCSGG 5 cut(s) 386, 894, 952, 1398, 1835
Bsa29I ATCGAT 1 cut(s) 1773
BsaAI YACGTR 1 cut(s) 610
BsaBI GATNNNNATC 2 cut(s) 555, 1362
BsaHI GRCGYC 2 cut(s) 117, 1627
BsaI GGTCTC 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 3 cut(s) 1403, 1653, 1833
Bse118I RCCGGY 1 cut(s) 924
Bse1I ACTGG 6 cut(s) 300, 346, 391, 416, 1319, 1409
Bse3DI GCAATG 1 cut(s) 779
Bse8I GATNNNNATC 2 cut(s) 555, 1362
BseBI CCWGG 1 cut(s) 733
BseCI ATCGAT 1 cut(s) 1773
BseGI GGATG 3 cut(s) 1427, 1793, 1830
BseJI GATNNNNATC 2 cut(s) 555, 1362
BseLI CCNNNNNNNGG 3 cut(s) 1403, 1653, 1833
BseMI GCAATG 1 cut(s) 779
BseMII CTCAG 2 cut(s) 201, 1447
BseNI ACTGG 6 cut(s) 300, 346, 391, 416, 1319, 1409
BseRI GAGGAG 3 cut(s) 77, 1201, 1476
BseSI GKGCMC 1 cut(s) 1409
BseX3I CGGCCG 1 cut(s) 922
BseXI GCAGC 8 cut(s) 469, 472, 487, 600, 915, 1524, 1800, 1852
BseYI CCCAGC 3 cut(s) 180, 1293, 1705
BsgI GTGCAG 1 cut(s) 1859
Bsh1236I CGCG 1 cut(s) 1494
Bsh1285I CGRYCG 1 cut(s) 925
BshNI GGYRCC 1 cut(s) 1626
BshVI ATCGAT 1 cut(s) 1773
BsiEI CGRYCG 1 cut(s) 925
BsiHKAI GWGCWC 2 cut(s) 862, 1537
BsiHKCI CYCGRG 1 cut(s) 1332
BsiWI CGTACG 1 cut(s) 687
BslFI GGGAC 3 cut(s) 422, 1557, 1739
BslI CCNNNNNNNGG 3 cut(s) 1403, 1653, 1833
BsmAI GTCTC 3 cut(s) 59, 1044, 1844
BsmFI GGGAC 3 cut(s) 422, 1557, 1739
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 1332
Bsp119I TTCGAA 1 cut(s) 56
Bsp120I GGGCCC 1 cut(s) 1405
Bsp1286I GDGCHC 5 cut(s) 862, 972, 1339, 1409, 1537
Bsp19I CCATGG 3 cut(s) 24, 1507, 1605
Bsp68I TCGCGA 1 cut(s) 1494
BspCNI CTCAG 2 cut(s) 200, 1446
BspDI ATCGAT 1 cut(s) 1773
BspFNI CGCG 1 cut(s) 1494
BspLI GGNNCC 5 cut(s) 206, 424, 834, 1407, 1628
BspMAI CTGCAG 2 cut(s) 618, 933
BspMI ACCTGC 2 cut(s) 1234, 1555
BspPI GGATC 9 cut(s) 417, 430, 827, 840, 998, 1462, 1490, 1572, 1617
BspQI GCTCTTC 1 cut(s) 867
BspT104I TTCGAA 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 1626
BspTNI GGTCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 779
BsrFI RCCGGY 1 cut(s) 924
BsrI ACTGG 6 cut(s) 300, 346, 391, 416, 1319, 1409
BssAI RCCGGY 1 cut(s) 924
BssNI GRCGYC 2 cut(s) 117, 1627
BssSI CACGAG 1 cut(s) 1530
BssT1I CCWWGG 7 cut(s) 24, 216, 828, 1045, 1507, 1605, 1757
Bst2BI CACGAG 1 cut(s) 1530
Bst2UI CCWGG 1 cut(s) 733
Bst4CI ACNGT 3 cut(s) 762, 851, 1571
Bst6I CTCTTC 1 cut(s) 867
BstACI GRCGYC 2 cut(s) 117, 1627
BstAPI GCANNNNNTGC 3 cut(s) 162, 613, 774
BstBAI YACGTR 1 cut(s) 610
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 4 cut(s) 417, 926, 1005, 1439
BstDEI CTNAG 6 cut(s) 187, 704, 1008, 1193, 1433, 1884
BstDSI CCRYGG 4 cut(s) 24, 1507, 1605, 1650
BstF5I GGATG 3 cut(s) 1427, 1793, 1830
BstFNI CGCG 1 cut(s) 1494
BstH2I RGCGCY 2 cut(s) 187, 1630
BstHHI GCGC 3 cut(s) 186, 1032, 1629
BstMAI GTCTC 3 cut(s) 59, 1044, 1844
BstMCI CGRYCG 1 cut(s) 925
BstMWI GCNNNNNNNGC 5 cut(s) 162, 440, 613, 692, 774
BstNI CCWGG 1 cut(s) 733
BstNSI RCATGY 1 cut(s) 1441
BstSCI CCNGG 6 cut(s) 384, 731, 892, 950, 1396, 1833
BstSFI CTRYAG 2 cut(s) 614, 929
BstSLI GKGCMC 1 cut(s) 1409
BstUI CGCG 1 cut(s) 1494
BstV1I GCAGC 8 cut(s) 469, 472, 487, 600, 915, 1524, 1800, 1852
BstV2I GAAGAC 2 cut(s) 1173, 1649
BstX2I RGATCY 2 cut(s) 422, 832
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 2 cut(s) 422, 832
BstZI CGGCCG 1 cut(s) 922
Bsu15I ATCGAT 1 cut(s) 1773
BsuTUI ATCGAT 1 cut(s) 1773
BtgI CCRYGG 4 cut(s) 24, 1507, 1605, 1650
BtgZI GCGATG 1 cut(s) 1523
BtsCI GGATG 3 cut(s) 1427, 1793, 1830
BtsI GCAGTG 3 cut(s) 477, 1093, 1813
BtsIMutI CAGTG 7 cut(s) 87, 293, 443, 477, 856, 1093, 1813
BtuMI TCGCGA 1 cut(s) 1494
BveI ACCTGC 2 cut(s) 1234, 1555
Cac8I GCNNGC 4 cut(s) 417, 926, 1005, 1439
CfoI GCGC 3 cut(s) 186, 1032, 1629
Cfr10I RCCGGY 1 cut(s) 924
Cfr13I GGNCC 7 cut(s) 44, 204, 388, 724, 1405, 1406, 1635
ClaI ATCGAT 1 cut(s) 1773
CseI GACGC 2 cut(s) 457, 1430
Csp6I GTAC 2 cut(s) 688, 882
CspCI CAANNNNNGTGG 2 cut(s) 1639, 1674
CviAII CATG 8 cut(s) 25, 162, 661, 774, 802, 1438, 1508, 1606
CviQI GTAC 2 cut(s) 688, 882
DdeI CTNAG 6 cut(s) 187, 704, 1008, 1193, 1433, 1884
DinI GGCGCC 1 cut(s) 1628
DriI GACNNNNNGTC 2 cut(s) 219, 453
EaeI YGGCCR 3 cut(s) 122, 922, 1452
EagI CGGCCG 1 cut(s) 922
Eam1104I CTCTTC 1 cut(s) 867
Eam1105I GACNNNNNGTC 2 cut(s) 219, 453
EarI CTCTTC 1 cut(s) 867
EclXI CGGCCG 1 cut(s) 922
Eco130I CCWWGG 7 cut(s) 24, 216, 828, 1045, 1507, 1605, 1757
Eco24I GRGCYC 3 cut(s) 972, 1339, 1409
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 4 cut(s) 204, 388, 724, 1635
Eco47III AGCGCT 1 cut(s) 185
Eco52I CGGCCG 1 cut(s) 922
Eco57I CTGAAG 1 cut(s) 1368
Eco72I CACGTG 1 cut(s) 610
Eco88I CYCGRG 1 cut(s) 1332
EcoO109I RGGNCCY 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 938
EcoRII CCWGG 1 cut(s) 731
EcoT14I CCWWGG 7 cut(s) 24, 216, 828, 1045, 1507, 1605, 1757
EcoT38I GRGCYC 3 cut(s) 972, 1339, 1409
EgeI GGCGCC 1 cut(s) 1628
EheI GGCGCC 1 cut(s) 1628
ErhI CCWWGG 7 cut(s) 24, 216, 828, 1045, 1507, 1605, 1757
FaeI CATG 8 cut(s) 28, 165, 664, 777, 805, 1441, 1511, 1609
FaqI GGGAC 3 cut(s) 422, 1557, 1739
FatI CATG 8 cut(s) 24, 161, 660, 773, 801, 1437, 1507, 1605
FauI CCCGC 2 cut(s) 1093, 1604
FokI GGATG 3 cut(s) 1414, 1780, 1817
FriOI GRGCYC 3 cut(s) 972, 1339, 1409
FspBI CTAG 4 cut(s) 428, 885, 1305, 1320
GlaI GCGC 3 cut(s) 185, 1031, 1628
GsaI CCCAGC 3 cut(s) 184, 1297, 1709
GsuI CTGGAG 2 cut(s) 152, 1684
HaeII RGCGCY 2 cut(s) 187, 1630
HgaI GACGC 2 cut(s) 457, 1430
HhaI GCGC 3 cut(s) 186, 1032, 1629
Hin1I GRCGYC 2 cut(s) 117, 1627
Hin1II CATG 8 cut(s) 28, 165, 664, 777, 805, 1441, 1511, 1609
Hin6I GCGC 3 cut(s) 184, 1030, 1627
HinP1I GCGC 3 cut(s) 184, 1030, 1627
HindIII AAGCTT 1 cut(s) 1262
HinfI GANTC 7 cut(s) 20, 134, 346, 556, 566, 746, 1752
HphI GGTGA 4 cut(s) 916, 1195, 1371, 1545
Hpy166II GTNNAC 1 cut(s) 724
Hpy188I TCNGA 3 cut(s) 1234, 1467, 1747
Hpy188III TCNNGA 7 cut(s) 350, 836, 866, 946, 994, 1305, 1493
Hpy8I GTNNAC 1 cut(s) 724
Hpy99I CGWCG 5 cut(s) 257, 695, 1494, 1626, 1635
HpyAV CCTTC 6 cut(s) 57, 347, 399, 895, 991, 1117
HpyCH4III ACNGT 3 cut(s) 762, 851, 1571
HpyCH4IV ACGT 4 cut(s) 117, 609, 622, 690
HpyF10VI GCNNNNNNNGC 5 cut(s) 162, 440, 613, 692, 774
HpyF3I CTNAG 6 cut(s) 187, 704, 1008, 1193, 1433, 1884
HpySE526I ACGT 4 cut(s) 117, 609, 622, 690
Hsp92I GRCGYC 2 cut(s) 117, 1627
Hsp92II CATG 8 cut(s) 28, 165, 664, 777, 805, 1441, 1511, 1609
HspAI GCGC 3 cut(s) 184, 1030, 1627
KasI GGCGCC 1 cut(s) 1626
KroI GCCGGC 1 cut(s) 924
KroNI GCCGGC 1 cut(s) 926
LguI GCTCTTC 1 cut(s) 867
LmnI GCTCC 4 cut(s) 127, 371, 1000, 1428
Lsp1109I GCAGC 8 cut(s) 469, 472, 487, 600, 915, 1524, 1800, 1852
LweI GCATC 4 cut(s) 136, 295, 387, 1559
MaeI CTAG 4 cut(s) 428, 885, 1305, 1320
MaeII ACGT 4 cut(s) 117, 609, 622, 690
MaeIII GTNAC 6 cut(s) 190, 670, 823, 1310, 1442, 1672
MfeI CAATTG 1 cut(s) 1137
MflI RGATCY 2 cut(s) 422, 832
MhlI GDGCHC 5 cut(s) 862, 972, 1339, 1409, 1537
MluCI AATT 7 cut(s) 168, 313, 333, 435, 938, 980, 1137
Mly113I GGCGCC 1 cut(s) 1627
MlyI GAGTC 5 cut(s) 29, 143, 575, 755, 1761
MroNI GCCGGC 1 cut(s) 924
MseI TTAA 5 cut(s) 171, 336, 468, 582, 1158
MslI CAYNNNNRTG 4 cut(s) 29, 1506, 1604, 1835
MspA1I CMGCKG 1 cut(s) 1181
MspR9I CCNGG 6 cut(s) 386, 733, 894, 952, 1398, 1835
MunI CAATTG 1 cut(s) 1137
MvaI CCWGG 1 cut(s) 733
MvnI CGCG 1 cut(s) 1494
MwoI GCNNNNNNNGC 5 cut(s) 162, 440, 613, 692, 774
NaeI GCCGGC 1 cut(s) 926
NarI GGCGCC 1 cut(s) 1627
NciI CCSGG 5 cut(s) 386, 894, 952, 1398, 1835
NcoI CCATGG 3 cut(s) 24, 1507, 1605
NgoMIV GCCGGC 1 cut(s) 924
NlaIII CATG 8 cut(s) 28, 165, 664, 777, 805, 1441, 1511, 1609
NlaIV GGNNCC 5 cut(s) 206, 424, 834, 1407, 1628
NmeAIII GCCGAG 2 cut(s) 1480, 1858
NmuCI GTSAC 3 cut(s) 670, 823, 1442
NruI TCGCGA 1 cut(s) 1494
NspI RCATGY 1 cut(s) 1441
NspV TTCGAA 1 cut(s) 56
PaeI GCATGC 1 cut(s) 1441
PciSI GCTCTTC 1 cut(s) 867
PcsI WCGNNNNNNNCGW 1 cut(s) 1618
PdiI GCCGGC 1 cut(s) 926
PfeI GAWTC 2 cut(s) 346, 556
Pfl23II CGTACG 1 cut(s) 687
PleI GAGTC 5 cut(s) 28, 142, 574, 754, 1760
PluTI GGCGCC 1 cut(s) 1630
PmaCI CACGTG 1 cut(s) 610
PmlI CACGTG 1 cut(s) 610
PpsI GAGTC 5 cut(s) 28, 142, 574, 754, 1760
Ppu21I YACGTR 1 cut(s) 610
PpuMI RGGWCCY 1 cut(s) 204
PshBI ATTAAT 1 cut(s) 171
PsiI TTATAA 1 cut(s) 600
Psp5II RGGWCCY 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 731
PspCI CACGTG 1 cut(s) 610
PspFI CCCAGC 3 cut(s) 180, 1293, 1705
PspGI CCWGG 1 cut(s) 731
PspLI CGTACG 1 cut(s) 687
PspN4I GGNNCC 5 cut(s) 206, 424, 834, 1407, 1628
PspOMI GGGCCC 1 cut(s) 1405
PspPI GGNCC 7 cut(s) 44, 204, 388, 724, 1405, 1406, 1635
PspPPI RGGWCCY 1 cut(s) 204
PstI CTGCAG 2 cut(s) 618, 933
PsuI RGATCY 2 cut(s) 422, 832
RruI TCGCGA 1 cut(s) 1494
RsaI GTAC 2 cut(s) 689, 883
RsaNI GTAC 2 cut(s) 688, 882
RseI CAYNNNNRTG 4 cut(s) 29, 1506, 1604, 1835
SapI GCTCTTC 1 cut(s) 867
SaqAI TTAA 5 cut(s) 171, 336, 468, 582, 1158
Sau96I GGNCC 7 cut(s) 44, 204, 388, 724, 1405, 1406, 1635
ScaI AGTACT 1 cut(s) 883
SchI GAGTC 5 cut(s) 29, 143, 575, 755, 1761
ScrFI CCNGG 6 cut(s) 386, 733, 894, 952, 1398, 1835
SduI GDGCHC 5 cut(s) 862, 972, 1339, 1409, 1537
SfaNI GCATC 4 cut(s) 136, 295, 387, 1559
SfcI CTRYAG 2 cut(s) 614, 929
SfoI GGCGCC 1 cut(s) 1628
SfuI TTCGAA 1 cut(s) 56
SinI GGWCC 4 cut(s) 204, 388, 724, 1635
SmiMI CAYNNNNRTG 4 cut(s) 29, 1506, 1604, 1835
SmlI CTYRAG 3 cut(s) 199, 273, 1265
SmoI CTYRAG 3 cut(s) 199, 273, 1265
SpeI ACTAGT 1 cut(s) 884
SphI GCATGC 1 cut(s) 1441
Sse9I AATT 7 cut(s) 168, 313, 333, 435, 938, 980, 1137
SspDI GGCGCC 1 cut(s) 1626
SspMI CTAG 4 cut(s) 428, 885, 1305, 1320
StyD4I CCNGG 6 cut(s) 384, 731, 892, 950, 1396, 1833
StyI CCWWGG 7 cut(s) 24, 216, 828, 1045, 1507, 1605, 1757
TaaI ACNGT 3 cut(s) 762, 851, 1571
TaiI ACGT 4 cut(s) 120, 612, 625, 693
TaqII GACCGA 1 cut(s) 1623
TasI AATT 7 cut(s) 168, 313, 333, 435, 938, 980, 1137
TatI WGTACW 1 cut(s) 881
TauI GCSGC 3 cut(s) 1478, 1694, 1697
TfiI GAWTC 2 cut(s) 346, 556
Tru1I TTAA 5 cut(s) 171, 336, 468, 582, 1158
Tru9I TTAA 5 cut(s) 171, 336, 468, 582, 1158
TscAI CASTG 7 cut(s) 94, 300, 450, 484, 856, 1093, 1813
TseFI GTSAC 3 cut(s) 670, 823, 1442
TseI GCWGC 8 cut(s) 482, 485, 500, 613, 928, 1512, 1788, 1840
Tsp45I GTSAC 3 cut(s) 670, 823, 1442
TspDTI ATGAA 8 cut(s) 150, 314, 486, 762, 931, 951, 1179, 1271
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 7 cut(s) 94, 300, 450, 484, 856, 1093, 1813
VpaK11BI GGWCC 4 cut(s) 204, 388, 724, 1635
VspI ATTAAT 1 cut(s) 171
XapI RAATTY 2 cut(s) 938, 980
XbaI TCTAGA 1 cut(s) 1304
XceI RCATGY 1 cut(s) 1441
XspI CTAG 4 cut(s) 428, 885, 1305, 1320
ZraI GACGTC 1 cut(s) 118
ZrmI AGTACT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.