Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ank_2 | PF12796 | 70 - 145 | 5.2e-08 | Ankyrin repeats (3 copies) |
| Ank_2 | PF12796 | 76 - 179 | 9.5e-14 | Ankyrin repeats (3 copies) |
| Ank_4 | PF13637 | 127 - 177 | 1.6e-09 | Ankyrin repeats (many copies) |
| Ank_2 | PF12796 | 347 - 428 | 9.2e-06 | Ankyrin repeats (3 copies) |
| PGG | PF13962 | 514 - 626 | 6e-22 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 698 |
| AccB1I | GGYRCC | 1 cut(s) | 1444 |
| AccII | CGCG | 1 cut(s) | 606 |
| AccIII | TCCGGA | 1 cut(s) | 1782 |
| AciI | CCGC | 4 cut(s) | 492, 604, 606, 1629 |
| AclWI | GGATC | 3 cut(s) | 1144, 1157, 1275 |
| AcoI | YGGCCR | 2 cut(s) | 489, 502 |
| AcsI | RAATTY | 4 cut(s) | 67, 344, 1062, 1286 |
| AcuI | CTGAAG | 1 cut(s) | 296 |
| AfaI | GTAC | 2 cut(s) | 242, 287 |
| AflIII | ACRYGT | 1 cut(s) | 1080 |
| AgsI | TTSAA | 9 cut(s) | 52, 214, 344, 396, 620, 727, 893, 954, 1418 |
| AjiI | CACGTC | 1 cut(s) | 1083 |
| AjnI | CCWGG | 2 cut(s) | 59, 1624 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 410, 442 |
| AleI | CACNNNNGTG | 1 cut(s) | 1730 |
| Alw26I | GTCTC | 4 cut(s) | 328, 334, 973, 1973 |
| AlwI | GGATC | 3 cut(s) | 1144, 1157, 1275 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1697 |
| Ama87I | CYCGRG | 1 cut(s) | 1385 |
| Aor13HI | TCCGGA | 1 cut(s) | 1782 |
| AoxI | GGCC | 7 cut(s) | 489, 502, 772, 859, 1167, 1382, 1534 |
| ApoI | RAATTY | 4 cut(s) | 67, 344, 1062, 1286 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 164 |
| AspS9I | GGNCC | 2 cut(s) | 1383, 2064 |
| AsuC2I | CCSGG | 2 cut(s) | 1386, 1387 |
| AsuHPI | GGTGA | 4 cut(s) | 427, 482, 1340, 1717 |
| AsuNHI | GCTAGC | 1 cut(s) | 703 |
| AvaI | CYCGRG | 1 cut(s) | 1385 |
| AvaII | GGWCC | 1 cut(s) | 2064 |
| BalI | TGGCCA | 1 cut(s) | 504 |
| BamHI | GGATCC | 1 cut(s) | 1149 |
| BanI | GGYRCC | 1 cut(s) | 1444 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 152, 184, 269, 301 |
| BbsI | GAAGAC | 1 cut(s) | 1678 |
| BceAI | ACGGC | 3 cut(s) | 237, 787, 1639 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 946, 980 |
| BciT130I | CCWGG | 2 cut(s) | 61, 1626 |
| BciVI | GTATCC | 1 cut(s) | 989 |
| BcnI | CCSGG | 2 cut(s) | 1386, 1387 |
| BcoDI | GTCTC | 4 cut(s) | 328, 334, 973, 1973 |
| BfaI | CTAG | 3 cut(s) | 456, 704, 2061 |
| BfmI | CTRYAG | 1 cut(s) | 990 |
| BfuAI | ACCTGC | 1 cut(s) | 698 |
| BfuI | GTATCC | 1 cut(s) | 989 |
| BlpI | GCTNAGC | 2 cut(s) | 1817, 2009 |
| Bme1390I | CCNGG | 4 cut(s) | 61, 1386, 1387, 1626 |
| Bme18I | GGWCC | 1 cut(s) | 2064 |
| BmeT110I | CYCGRG | 1 cut(s) | 1385 |
| BmgBI | CACGTC | 1 cut(s) | 1083 |
| BmgT120I | GGNCC | 2 cut(s) | 1383, 2064 |
| BmiI | GGNNCC | 2 cut(s) | 1151, 1446 |
| BmrFI | CCNGG | 4 cut(s) | 61, 1386, 1387, 1626 |
| BmrI | ACTGGG | 1 cut(s) | 93 |
| BmsI | GCATC | 4 cut(s) | 371, 1627, 1703, 1715 |
| BmtI | GCTAGC | 1 cut(s) | 707 |
| BmuI | ACTGGG | 1 cut(s) | 93 |
| BpiI | GAAGAC | 1 cut(s) | 1678 |
| BpmI | CTGGAG | 2 cut(s) | 1476, 1943 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1817, 2009 |
| BpuEI | CTTGAG | 1 cut(s) | 1357 |
| BpuMI | CCSGG | 2 cut(s) | 1386, 1387 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1000 |
| BsaJI | CCNNGG | 4 cut(s) | 604, 1298, 1385, 1386 |
| BsaWI | WCCGGW | 3 cut(s) | 823, 910, 1782 |
| Bse1I | ACTGG | 4 cut(s) | 99, 417, 779, 866 |
| Bse3DI | GCAATG | 2 cut(s) | 1917, 1923 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1000 |
| BseAI | TCCGGA | 1 cut(s) | 1782 |
| BseBI | CCWGG | 2 cut(s) | 61, 1626 |
| BseDI | CCNNGG | 4 cut(s) | 604, 1298, 1385, 1386 |
| BseGI | GGATG | 3 cut(s) | 802, 889, 1183 |
| BseJI | GATNNNNATC | 1 cut(s) | 1000 |
| BseMI | GCAATG | 2 cut(s) | 1917, 1923 |
| BseMII | CTCAG | 4 cut(s) | 339, 345, 1743, 2000 |
| BseNI | ACTGG | 4 cut(s) | 99, 417, 779, 866 |
| BseRI | GAGGAG | 3 cut(s) | 188, 683, 1652 |
| BsgI | GTGCAG | 2 cut(s) | 1262, 1434 |
| Bsh1236I | CGCG | 1 cut(s) | 606 |
| BshFI | GGCC | 7 cut(s) | 491, 504, 774, 861, 1169, 1384, 1536 |
| BshNI | GGYRCC | 1 cut(s) | 1444 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1385 |
| BsiSI | CCGG | 4 cut(s) | 824, 911, 1386, 1783 |
| BsmAI | GTCTC | 4 cut(s) | 328, 334, 973, 1973 |
| BsmBI | CGTCTC | 1 cut(s) | 1973 |
| BsmI | GAATGC | 2 cut(s) | 364, 1676 |
| BsnI | GGCC | 7 cut(s) | 491, 504, 774, 861, 1169, 1384, 1536 |
| BsoBI | CYCGRG | 1 cut(s) | 1385 |
| Bsp13I | TCCGGA | 1 cut(s) | 1782 |
| Bsp1407I | TGTACA | 2 cut(s) | 240, 285 |
| Bsp143I | GATC | 4 cut(s) | 762, 1149, 1267, 2051 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1817, 2009 |
| BspACI | CCGC | 4 cut(s) | 492, 604, 606, 1629 |
| BspANI | GGCC | 7 cut(s) | 491, 504, 774, 861, 1169, 1384, 1536 |
| BspCNI | CTCAG | 4 cut(s) | 338, 344, 1742, 2001 |
| BspEI | TCCGGA | 1 cut(s) | 1782 |
| BspFNI | CGCG | 1 cut(s) | 606 |
| BspHI | TCATGA | 3 cut(s) | 382, 592, 1875 |
| BspLI | GGNNCC | 2 cut(s) | 1151, 1446 |
| BspMI | ACCTGC | 1 cut(s) | 698 |
| BspOI | GCTAGC | 1 cut(s) | 707 |
| BspPI | GGATC | 3 cut(s) | 1144, 1157, 1275 |
| BspQI | GCTCTTC | 4 cut(s) | 137, 155, 231, 1503 |
| BspT107I | GGYRCC | 1 cut(s) | 1444 |
| BsrDI | GCAATG | 2 cut(s) | 1917, 1923 |
| BsrGI | TGTACA | 2 cut(s) | 240, 285 |
| BsrI | ACTGG | 4 cut(s) | 99, 417, 779, 866 |
| BssECI | CCNNGG | 4 cut(s) | 604, 1298, 1385, 1386 |
| BssMI | GATC | 4 cut(s) | 762, 1149, 1267, 2051 |
| Bst2UI | CCWGG | 2 cut(s) | 61, 1626 |
| Bst4CI | ACNGT | 4 cut(s) | 245, 1597, 1621, 1684 |
| Bst6I | CTCTTC | 4 cut(s) | 137, 155, 231, 1503 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 690, 1598 |
| BstAUI | TGTACA | 2 cut(s) | 240, 285 |
| BstC8I | GCNNGC | 5 cut(s) | 705, 1403, 1449, 1652, 1823 |
| BstDEI | CTNAG | 6 cut(s) | 325, 331, 352, 1729, 1817, 2009 |
| BstDSI | CCRYGG | 1 cut(s) | 604 |
| BstF5I | GGATG | 3 cut(s) | 802, 889, 1183 |
| BstFNI | CGCG | 1 cut(s) | 606 |
| BstKTI | GATC | 4 cut(s) | 765, 1152, 1270, 2054 |
| BstMAI | GTCTC | 4 cut(s) | 328, 334, 973, 1973 |
| BstMBI | GATC | 4 cut(s) | 762, 1149, 1267, 2051 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 690, 1519, 1598, 1801, 1822 |
| BstNI | CCWGG | 2 cut(s) | 61, 1626 |
| BstNSI | RCATGY | 1 cut(s) | 1825 |
| BstSCI | CCNGG | 4 cut(s) | 59, 1384, 1385, 1624 |
| BstSFI | CTRYAG | 1 cut(s) | 990 |
| BstUI | CGCG | 1 cut(s) | 606 |
| BstV2I | GAAGAC | 1 cut(s) | 1678 |
| BstX2I | RGATCY | 2 cut(s) | 1149, 1267 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1066 |
| BstYI | RGATCY | 2 cut(s) | 1149, 1267 |
| BsuI | GTATCC | 1 cut(s) | 989 |
| BsuRI | GGCC | 7 cut(s) | 491, 504, 774, 861, 1169, 1384, 1536 |
| BtgI | CCRYGG | 1 cut(s) | 604 |
| BtrI | CACGTC | 1 cut(s) | 1083 |
| BtsCI | GGATG | 3 cut(s) | 802, 889, 1183 |
| BtsI | GCAGTG | 1 cut(s) | 243 |
| BtsIMutI | CAGTG | 3 cut(s) | 115, 243, 1737 |
| BveI | ACCTGC | 1 cut(s) | 698 |
| Cac8I | GCNNGC | 5 cut(s) | 705, 1403, 1449, 1652, 1823 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1697 |
| CciI | TCATGA | 3 cut(s) | 382, 592, 1875 |
| Cfr13I | GGNCC | 2 cut(s) | 1383, 2064 |
| Cfr42I | CCGCGG | 1 cut(s) | 607 |
| Cfr9I | CCCGGG | 1 cut(s) | 1385 |
| Csp6I | GTAC | 2 cut(s) | 241, 286 |
| CviQI | GTAC | 2 cut(s) | 241, 286 |
| DdeI | CTNAG | 6 cut(s) | 325, 331, 352, 1729, 1817, 2009 |
| DpnI | GATC | 4 cut(s) | 764, 1151, 1269, 2053 |
| DpnII | GATC | 4 cut(s) | 762, 1149, 1267, 2051 |
| DraI | TTTAAA | 1 cut(s) | 1291 |
| EaeI | YGGCCR | 2 cut(s) | 489, 502 |
| Eam1104I | CTCTTC | 4 cut(s) | 137, 155, 231, 1503 |
| EarI | CTCTTC | 4 cut(s) | 137, 155, 231, 1503 |
| Eco47I | GGWCC | 1 cut(s) | 2064 |
| Eco57I | CTGAAG | 1 cut(s) | 296 |
| Eco88I | CYCGRG | 1 cut(s) | 1385 |
| EcoRI | GAATTC | 1 cut(s) | 344 |
| EcoRII | CCWGG | 2 cut(s) | 59, 1624 |
| EcoT22I | ATGCAT | 2 cut(s) | 364, 1571 |
| Esp3I | CGTCTC | 1 cut(s) | 1973 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 119, 151 |
| FokI | GGATG | 3 cut(s) | 809, 896, 1190 |
| FspBI | CTAG | 3 cut(s) | 456, 704, 2061 |
| GsuI | CTGGAG | 2 cut(s) | 1476, 1943 |
| HaeIII | GGCC | 7 cut(s) | 491, 504, 774, 861, 1169, 1384, 1536 |
| HapII | CCGG | 4 cut(s) | 824, 911, 1386, 1783 |
| HincII | GTYRAC | 1 cut(s) | 1112 |
| HindII | GTYRAC | 1 cut(s) | 1112 |
| HindIII | AAGCTT | 2 cut(s) | 1052, 1802 |
| HinfI | GANTC | 6 cut(s) | 266, 538, 589, 981, 1246, 1277 |
| HpaII | CCGG | 4 cut(s) | 824, 911, 1386, 1783 |
| HphI | GGTGA | 4 cut(s) | 427, 482, 1340, 1717 |
| Hpy166II | GTNNAC | 4 cut(s) | 241, 286, 1112, 1992 |
| Hpy188I | TCNGA | 5 cut(s) | 334, 1299, 1411, 1636, 1699 |
| Hpy8I | GTNNAC | 4 cut(s) | 241, 286, 1112, 1992 |
| Hpy99I | CGWCG | 1 cut(s) | 1762 |
| HpyAV | CCTTC | 3 cut(s) | 327, 785, 872 |
| HpyCH4III | ACNGT | 4 cut(s) | 245, 1597, 1621, 1684 |
| HpyCH4IV | ACGT | 4 cut(s) | 903, 1082, 1114, 1757 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 690, 1519, 1598, 1801, 1822 |
| HpyF3I | CTNAG | 6 cut(s) | 325, 331, 352, 1729, 1817, 2009 |
| HpySE526I | ACGT | 4 cut(s) | 903, 1082, 1114, 1757 |
| Kpn2I | TCCGGA | 1 cut(s) | 1782 |
| KspI | CCGCGG | 1 cut(s) | 607 |
| Kzo9I | GATC | 4 cut(s) | 762, 1149, 1267, 2051 |
| LguI | GCTCTTC | 4 cut(s) | 137, 155, 231, 1503 |
| LmnI | GCTCC | 1 cut(s) | 1665 |
| LweI | GCATC | 4 cut(s) | 371, 1627, 1703, 1715 |
| MaeI | CTAG | 3 cut(s) | 456, 704, 2061 |
| MaeII | ACGT | 4 cut(s) | 903, 1082, 1114, 1757 |
| MaeIII | GTNAC | 2 cut(s) | 1115, 1483 |
| MalI | GATC | 4 cut(s) | 764, 1151, 1269, 2053 |
| MboI | GATC | 4 cut(s) | 762, 1149, 1267, 2051 |
| MflI | RGATCY | 2 cut(s) | 1149, 1267 |
| MlsI | TGGCCA | 1 cut(s) | 504 |
| MluCI | AATT | 9 cut(s) | 67, 181, 344, 512, 632, 888, 1062, 1286, 1548 |
| MluNI | TGGCCA | 1 cut(s) | 504 |
| MlyI | GAGTC | 1 cut(s) | 975 |
| Mox20I | TGGCCA | 1 cut(s) | 504 |
| Mph1103I | ATGCAT | 2 cut(s) | 364, 1571 |
| MroI | TCCGGA | 1 cut(s) | 1782 |
| MroXI | GAANNNNTTC | 1 cut(s) | 164 |
| MscI | TGGCCA | 1 cut(s) | 504 |
| MseI | TTAA | 4 cut(s) | 204, 1290, 1317, 1547 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1730 |
| Msp20I | TGGCCA | 1 cut(s) | 504 |
| MspA1I | CMGCKG | 3 cut(s) | 606, 700, 1136 |
| MspI | CCGG | 4 cut(s) | 824, 911, 1386, 1783 |
| MspR9I | CCNGG | 4 cut(s) | 61, 1386, 1387, 1626 |
| Mva1269I | GAATGC | 2 cut(s) | 364, 1676 |
| MvaI | CCWGG | 2 cut(s) | 61, 1626 |
| MvnI | CGCG | 1 cut(s) | 606 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 690, 1519, 1598, 1801, 1822 |
| NciI | CCSGG | 2 cut(s) | 1386, 1387 |
| NdeII | GATC | 4 cut(s) | 762, 1149, 1267, 2051 |
| NheI | GCTAGC | 1 cut(s) | 703 |
| NlaIV | GGNNCC | 2 cut(s) | 1151, 1446 |
| NmuCI | GTSAC | 1 cut(s) | 1115 |
| NsiI | ATGCAT | 2 cut(s) | 364, 1571 |
| NspI | RCATGY | 1 cut(s) | 1825 |
| OliI | CACNNNNGTG | 1 cut(s) | 1730 |
| PaeI | GCATGC | 1 cut(s) | 1825 |
| PagI | TCATGA | 3 cut(s) | 382, 592, 1875 |
| PciSI | GCTCTTC | 4 cut(s) | 137, 155, 231, 1503 |
| PctI | GAATGC | 2 cut(s) | 364, 1676 |
| PdmI | GAANNNNTTC | 1 cut(s) | 164 |
| PfeI | GAWTC | 5 cut(s) | 266, 538, 589, 1246, 1277 |
| PflFI | GACNNNGTC | 1 cut(s) | 2062 |
| PleI | GAGTC | 1 cut(s) | 975 |
| PpsI | GAGTC | 1 cut(s) | 975 |
| Psp6I | CCWGG | 2 cut(s) | 59, 1624 |
| PspGI | CCWGG | 2 cut(s) | 59, 1624 |
| PspN4I | GGNNCC | 2 cut(s) | 1151, 1446 |
| PspPI | GGNCC | 2 cut(s) | 1383, 2064 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1697 |
| PsuI | RGATCY | 2 cut(s) | 1149, 1267 |
| PsyI | GACNNNGTC | 1 cut(s) | 2062 |
| PvuII | CAGCTG | 2 cut(s) | 700, 1136 |
| RsaI | GTAC | 2 cut(s) | 242, 287 |
| RsaNI | GTAC | 2 cut(s) | 241, 286 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1730 |
| SacII | CCGCGG | 1 cut(s) | 607 |
| SapI | GCTCTTC | 4 cut(s) | 137, 155, 231, 1503 |
| SaqAI | TTAA | 4 cut(s) | 204, 1290, 1317, 1547 |
| Sau3AI | GATC | 4 cut(s) | 762, 1149, 1267, 2051 |
| Sau96I | GGNCC | 2 cut(s) | 1383, 2064 |
| SchI | GAGTC | 1 cut(s) | 975 |
| ScrFI | CCNGG | 4 cut(s) | 61, 1386, 1387, 1626 |
| SfaNI | GCATC | 4 cut(s) | 371, 1627, 1703, 1715 |
| SfcI | CTRYAG | 1 cut(s) | 990 |
| Sfr303I | CCGCGG | 1 cut(s) | 607 |
| SgrBI | CCGCGG | 1 cut(s) | 607 |
| SinI | GGWCC | 1 cut(s) | 2064 |
| SmaI | CCCGGG | 1 cut(s) | 1387 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1730 |
| SmlI | CTYRAG | 1 cut(s) | 1372 |
| SmoI | CTYRAG | 1 cut(s) | 1372 |
| SphI | GCATGC | 1 cut(s) | 1825 |
| Sse9I | AATT | 9 cut(s) | 67, 181, 344, 512, 632, 888, 1062, 1286, 1548 |
| SsiI | CCGC | 4 cut(s) | 492, 604, 606, 1629 |
| SspI | AATATT | 1 cut(s) | 1981 |
| SspMI | CTAG | 3 cut(s) | 456, 704, 2061 |
| StyD4I | CCNGG | 4 cut(s) | 59, 1384, 1385, 1624 |
| TaaI | ACNGT | 4 cut(s) | 245, 1597, 1621, 1684 |
| TaiI | ACGT | 4 cut(s) | 906, 1085, 1117, 1760 |
| TaqI | TCGA | 6 cut(s) | 838, 925, 1197, 1275, 1760, 2050 |
| TasI | AATT | 9 cut(s) | 67, 181, 344, 512, 632, 888, 1062, 1286, 1548 |
| TatI | WGTACW | 2 cut(s) | 240, 285 |
| TauI | GCSGC | 2 cut(s) | 494, 609 |
| TfiI | GAWTC | 5 cut(s) | 266, 538, 589, 1246, 1277 |
| Tru1I | TTAA | 4 cut(s) | 204, 1290, 1317, 1547 |
| Tru9I | TTAA | 4 cut(s) | 204, 1290, 1317, 1547 |
| TscAI | CASTG | 3 cut(s) | 115, 243, 1737 |
| TseFI | GTSAC | 1 cut(s) | 1115 |
| Tsp45I | GTSAC | 1 cut(s) | 1115 |
| TspMI | CCCGGG | 1 cut(s) | 1385 |
| TspRI | CASTG | 3 cut(s) | 115, 243, 1737 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2062 |
| VpaK11BI | GGWCC | 1 cut(s) | 2064 |
| XapI | RAATTY | 4 cut(s) | 67, 344, 1062, 1286 |
| XceI | RCATGY | 1 cut(s) | 1825 |
| XmaI | CCCGGG | 1 cut(s) | 1385 |
| XmnI | GAANNNNTTC | 1 cut(s) | 164 |
| XspI | CTAG | 3 cut(s) | 456, 704, 2061 |
| Zsp2I | ATGCAT | 2 cut(s) | 364, 1571 |