RLG00000004643

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000145
Physical Location & Seq
Forward (+)
61070248 .. 61076488
6241 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004643

Sequence Viewer

Length: 591 bp
ATGGAGGTCATTGAGCTGCACCACCAGATCGTTCGCAATGAAGCTCTCACTTTTGAATTCACCTCTTTCACTACCCTCTTCTCACCATACCATGCACCAAAATTGTCAGATTCCTTTTCCATGGTGGAAGCAGCATTAGCAGAGCATGGAATTTCTTACACACTCAACCTGGTTAAGCGTTATATTATTGTCCAAACAACCACAAGGTCAACGGATCCAGATACCATATACCGGGCTCGGGATTTCATTTTACTTCTGTCCAGAACTCAAGTTCCACCATCTACGCTAAAACCGCGAGAGTGCGAGCGAGTGACGATGGAGATCTGCGCCGGTCACAAATCGGAGATGCTGTGCCCAAACTCCGACCACATGGAGTTGGAAAAGTCTGAAGTGACCTCCTTCACCGAGTCATTCTCCAAATACCACAGTGAGTCACGTACAGCTGAGCTTTACATGACTGTCTCAACCACCCCAAGGACCAAAGATCCAGACATCATTCACAGGGCTAGGGAGATTATTGTGCTTCTGTCCAAAACTACTGTTCCGACATATGTGCGTTTTGTGTTTATTTTTAGGGATTCGAGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.58

Weight (kDa)

6.24

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 22 - 89 3.8e-13 Krr1 KH1 domain
KH_KRR1_1st PF17903 141 - 180 4.3e-06 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 295
AciI CCGC 1 cut(s) 293
AclWI GGATC 3 cut(s) 209, 222, 479
AcsI RAATTY 2 cut(s) 56, 150
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 2 cut(s) 439, 586
AfiI CCNNNNNNNGG 3 cut(s) 231, 238, 474
AgsI TTSAA 1 cut(s) 56
AjnI CCWGG 1 cut(s) 168
AloI GAACNNNNNNTCC 2 cut(s) 256, 288
AluBI AGCT 4 cut(s) 16, 44, 443, 448
AluI AGCT 4 cut(s) 16, 44, 443, 448
Alw26I GTCTC 1 cut(s) 466
AlwI GGATC 3 cut(s) 209, 222, 479
Ama87I CYCGRG 1 cut(s) 237
ApeKI GCWGC 2 cut(s) 16, 131
ApoI RAATTY 2 cut(s) 56, 150
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 477
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 3 cut(s) 52, 75, 394
AvaI CYCGRG 1 cut(s) 237
AvaII GGWCC 1 cut(s) 477
BaeGI GKGCMC 1 cut(s) 356
BamHI GGATCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 3, 143
BccI CCATC 2 cut(s) 286, 310
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BciT130I CCWGG 1 cut(s) 170
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 1 cut(s) 507
BglII AGATCT 1 cut(s) 321
BisI GCNGC 2 cut(s) 17, 132
BlpI GCTNAGC 1 cut(s) 444
BlsI GCNGC 2 cut(s) 18, 133
Bme1390I CCNGG 2 cut(s) 170, 233
Bme18I GGWCC 1 cut(s) 477
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 477
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 2 cut(s) 170, 233
BmsI GCATC 1 cut(s) 336
BplI GAGNNNNNCTC 2 cut(s) 398, 430
Bpu1102I GCTNAGC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 437
BsaBI GATNNNNATC 1 cut(s) 320
BsaJI CCNNGG 2 cut(s) 120, 473
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 3 cut(s) 231, 238, 474
Bse118I RCCGGY 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 320
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 120, 473
BseJI GATNNNNATC 1 cut(s) 320
BseLI CCNNNNNNNGG 3 cut(s) 231, 238, 474
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 435
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 2 cut(s) 3, 143
Bsh1236I CGCG 1 cut(s) 295
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 2 cut(s) 232, 330
BslI CCNNNNNNNGG 3 cut(s) 231, 238, 474
BsmAI GTCTC 1 cut(s) 466
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 238, 356
Bsp143I GATC 4 cut(s) 27, 214, 321, 484
Bsp1720I GCTNAGC 1 cut(s) 444
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 3 cut(s) 209, 222, 479
BsrDI GCAATG 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 120, 473
BssMI GATC 4 cut(s) 27, 214, 321, 484
BssT1I CCWWGG 2 cut(s) 120, 473
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 3 cut(s) 428, 460, 541
Bst6I CTCTTC 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 444
BstDSI CCRYGG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 295
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 4 cut(s) 30, 217, 324, 487
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 4 cut(s) 27, 214, 321, 484
BstMWI GCNNNNNNNGC 2 cut(s) 137, 292
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 168, 231
BstSLI GKGCMC 1 cut(s) 356
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 2 cut(s) 3, 143
BstX2I RGATCY 3 cut(s) 214, 321, 484
BstYI RGATCY 3 cut(s) 214, 321, 484
BtgI CCRYGG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 433
Cac8I GCNNGC 1 cut(s) 305
CfoI GCGC 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 477
CsiI ACCWGGT 1 cut(s) 168
Csp6I GTAC 2 cut(s) 438, 585
CviAII CATG 5 cut(s) 92, 121, 146, 370, 454
CviJI RGCY 6 cut(s) 16, 44, 236, 443, 448, 506
CviKI_1 RGCY 6 cut(s) 16, 44, 236, 443, 448, 506
CviQI GTAC 2 cut(s) 438, 585
DdeI CTNAG 1 cut(s) 444
DpnI GATC 4 cut(s) 29, 216, 323, 486
DpnII GATC 4 cut(s) 27, 214, 321, 484
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 120, 473
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 408
Eco88I CYCGRG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 2 cut(s) 120, 473
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 120, 473
FaeI CATG 5 cut(s) 95, 124, 149, 373, 457
FatI CATG 5 cut(s) 91, 120, 145, 369, 453
FauNDI CATATG 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 17, 132
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 17, 132
FspBI CTAG 1 cut(s) 507
GlaI GCGC 1 cut(s) 328
GluI GCNGC 2 cut(s) 17, 132
HapII CCGG 2 cut(s) 232, 330
HhaI GCGC 1 cut(s) 329
Hin1II CATG 5 cut(s) 95, 124, 149, 373, 457
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 4 cut(s) 110, 407, 431, 578
HpaII CCGG 2 cut(s) 232, 330
HphI GGTGA 3 cut(s) 52, 75, 394
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 5 cut(s) 109, 343, 364, 388, 546
Hpy188III TCNNGA 4 cut(s) 218, 239, 261, 488
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 3 cut(s) 428, 460, 541
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 2 cut(s) 19, 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 292
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 1 cut(s) 436
Hsp92II CATG 5 cut(s) 95, 124, 149, 373, 457
HspAI GCGC 1 cut(s) 327
Kzo9I GATC 4 cut(s) 27, 214, 321, 484
LpnPI CCDG 9 cut(s) 38, 155, 182, 231, 245, 274, 343, 487, 501
Lsp1109I GCAGC 2 cut(s) 3, 143
LweI GCATC 1 cut(s) 336
MabI ACCWGGT 1 cut(s) 168
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 436
MaeIII GTNAC 4 cut(s) 310, 332, 391, 432
MalI GATC 4 cut(s) 29, 216, 323, 486
MboI GATC 4 cut(s) 27, 214, 321, 484
MboII GAAGA 1 cut(s) 70
MflI RGATCY 3 cut(s) 214, 321, 484
MhlI GDGCHC 2 cut(s) 238, 356
MluCI AATT 3 cut(s) 56, 101, 150
MlyI GAGTC 2 cut(s) 416, 440
MmeI TCCRAC 3 cut(s) 357, 387, 569
MnlI CCTC 3 cut(s) 73, 86, 406
MseI TTAA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 232, 330
MspR9I CCNGG 2 cut(s) 170, 233
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 2 cut(s) 137, 292
NciI CCSGG 1 cut(s) 233
NcoI CCATGG 1 cut(s) 120
NdeI CATATG 1 cut(s) 550
NdeII GATC 4 cut(s) 27, 214, 321, 484
NlaIII CATG 5 cut(s) 95, 124, 149, 373, 457
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 4 cut(s) 310, 332, 391, 432
PfeI GAWTC 2 cut(s) 110, 578
PkrI GCNGC 2 cut(s) 18, 133
PleI GAGTC 2 cut(s) 415, 439
PpsI GAGTC 2 cut(s) 415, 439
Ppu21I YACGTR 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 477
PsuI RGATCY 3 cut(s) 214, 321, 484
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 2 cut(s) 439, 586
RsaNI GTAC 2 cut(s) 438, 585
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 2 cut(s) 17, 132
Sau3AI GATC 4 cut(s) 27, 214, 321, 484
Sau96I GGNCC 1 cut(s) 477
SchI GAGTC 2 cut(s) 416, 440
ScrFI CCNGG 2 cut(s) 170, 233
SduI GDGCHC 2 cut(s) 238, 356
SexAI ACCWGGT 1 cut(s) 168
SfaNI GCATC 1 cut(s) 336
SinI GGWCC 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 3 cut(s) 56, 101, 150
SsiI CCGC 1 cut(s) 293
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 2 cut(s) 168, 231
StyI CCWWGG 2 cut(s) 120, 473
TaaI ACNGT 3 cut(s) 428, 460, 541
TaiI ACGT 1 cut(s) 439
TaqI TCGA 1 cut(s) 581
TasI AATT 3 cut(s) 56, 101, 150
TatI WGTACW 1 cut(s) 584
TfiI GAWTC 2 cut(s) 110, 578
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 433
TseFI GTSAC 4 cut(s) 310, 332, 391, 432
TseI GCWGC 2 cut(s) 16, 131
Tsp45I GTSAC 4 cut(s) 310, 332, 391, 432
TspDTI ATGAA 2 cut(s) 54, 235
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 477
XapI RAATTY 2 cut(s) 56, 150
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.