RLG00000032072

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000145
Physical Location & Seq
Reverse (-)
10675928 .. 10679982
4055 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032072

Sequence Viewer

Length: 1002 bp
ATGGTAAGGAGGATTGTGGAAGACTGTATAGCTCATGATGTGCCTCCTGCACCCCGTGTCCAGAGGATGAAAAAGAAGAGCCAAGCAAAAAAGGATAGGAGGATCAAAAGGACGAGTGAAGTGTCGATGAATCTCCAAGCTTTGTGTCTTGTCCTAAAGGCTAAAGCACATGATGATCAATGTGGCAAAACCCAGCTCCCAAATAGTCATGAAAACCCAAACTACTTCTGCAACTTTCGCAATTGTCTCCTTCCTTCTTCTCCATGCTTCCGCGGCAGCTTCAGATTCAATCCAAGATACCTTCCTCTAATGCCTTTCCAATCTTTCTCAATCCCCCCTCGCCACCAATCTCATCCGTCACCTATTTCCCCATCAAAATTGGAACTATACCCTTCCAAACAGACACTCTCATCTAGCTCGTCTCTCGATCTCAAGTCATCTAGGGTTTCACACCCACACAAAACCCACATCTGCAATGGAGAACAGCAACTCAAAAGCGGACCAAATCGAGGTGGAGGTGTCTCAGACTCTCAGTTCGAGAATGACTTTGATGTCCTCTCTTACACCAAGTTCGACGACGAATTCCTCAACGTGGATTTGCGGAAAGAAAGTTGGCTAAAAGTAGAGTCTTCTTTAAAAGAATATGGCGTCCTATGCACCCTGGATGTGGTTGAGGGTAAAATGAAAGTCTCCCGAGCCACAAGGGGAAACACCATTGCTGTGATTGGTGGTTCACTCCAAGGAATAAATATAGTAAGGAGGATTGTGGAAGACTGCATTGTTCATGATGTGCCTCCTTTACCCCGGTTGATTTCAGAGCTGCTCTCCGCCTCAACAAAGTCATCCACGACGGAGCTGCACTCCGCCTCAACAAAAACCACGCCATCCTCAAACAAAGTCATCCGCATTACAATCGATTTGGAGCTCAGGACAAATCGATTTGGAGCTCAACAAAAACCATCCTCGTTTCACGCCATGGGGGTTCCCGTTAGCCTCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

37.27

Weight (kDa)

9.63

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 551
AccII CGCG 1 cut(s) 273
AciI CCGC 7 cut(s) 271, 273, 498, 601, 828, 864, 904
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 581
AcuI CTGAAG 1 cut(s) 265
AcyI GRCGYC 1 cut(s) 648
AdeI CACNNNGTG 1 cut(s) 56
AfiI CCNNNNNNNGG 3 cut(s) 509, 592, 667
AgsI TTSAA 1 cut(s) 289
AjnI CCWGG 1 cut(s) 660
AluBI AGCT 9 cut(s) 32, 140, 196, 279, 417, 820, 856, 925, 947
AluI AGCT 9 cut(s) 32, 140, 196, 279, 417, 820, 856, 925, 947
Alw21I GWGCWC 2 cut(s) 927, 949
Alw26I GTCTC 4 cut(s) 251, 426, 526, 694
AlwI GGATC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 693
ApeKI GCWGC 3 cut(s) 276, 820, 856
ApoI RAATTY 1 cut(s) 581
ArsI GACNNNNNNTTYG 2 cut(s) 518, 550
AspS9I GGNCC 1 cut(s) 500
AsuC2I CCSGG 1 cut(s) 805
AsuHPI GGTGA 1 cut(s) 351
AvaI CYCGRG 1 cut(s) 693
AvaII GGWCC 1 cut(s) 500
BanII GRGCYC 2 cut(s) 927, 949
BbsI GAAGAC 3 cut(s) 27, 621, 777
Bbv12I GWGCWC 2 cut(s) 927, 949
BbvI GCAGC 3 cut(s) 288, 807, 843
BccI CCATC 3 cut(s) 379, 892, 967
BcgI CGANNNNNNTGC 4 cut(s) 838, 872, 895, 929
BciT130I CCWGG 1 cut(s) 662
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 1 cut(s) 805
BcoDI GTCTC 4 cut(s) 251, 426, 526, 694
BfaI CTAG 2 cut(s) 414, 441
BisI GCNGC 4 cut(s) 274, 277, 821, 857
BlsI GCNGC 4 cut(s) 275, 278, 822, 858
Bme1390I CCNGG 2 cut(s) 662, 805
Bme18I GGWCC 1 cut(s) 500
BmeT110I CYCGRG 1 cut(s) 693
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 984
BmrFI CCNGG 2 cut(s) 662, 805
BpiI GAAGAC 3 cut(s) 27, 621, 777
BplI GAGNNNNNCTC 4 cut(s) 809, 841, 845, 877
Bpu10I CCTNAGC 1 cut(s) 926
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 1 cut(s) 805
Bsa29I ATCGAT 2 cut(s) 915, 937
BsaHI GRCGYC 1 cut(s) 648
BsaJI CCNNGG 5 cut(s) 271, 660, 739, 803, 975
BsaWI WCCGGW 1 cut(s) 996
Bsc4I CCNNNNNNNGG 3 cut(s) 509, 592, 667
Bse3DI GCAATG 2 cut(s) 481, 714
BseBI CCWGG 1 cut(s) 662
BseCI ATCGAT 2 cut(s) 915, 937
BseDI CCNNGG 5 cut(s) 271, 660, 739, 803, 975
BseGI GGATG 7 cut(s) 72, 352, 670, 842, 884, 900, 959
BseLI CCNNNNNNNGG 3 cut(s) 509, 592, 667
BseMI GCAATG 2 cut(s) 481, 714
BseMII CTCAG 3 cut(s) 537, 545, 940
BseXI GCAGC 3 cut(s) 288, 807, 843
BseYI CCCAGC 1 cut(s) 192
BsgI GTGCAG 2 cut(s) 33, 842
Bsh1236I CGCG 1 cut(s) 273
BshVI ATCGAT 2 cut(s) 915, 937
BsiHKAI GWGCWC 2 cut(s) 927, 949
BsiHKCI CYCGRG 1 cut(s) 693
BsiSI CCGG 2 cut(s) 805, 997
BslI CCNNNNNNNGG 3 cut(s) 509, 592, 667
BsmAI GTCTC 4 cut(s) 251, 426, 526, 694
BsmBI CGTCTC 1 cut(s) 426
BsoBI CYCGRG 1 cut(s) 693
Bsp1286I GDGCHC 2 cut(s) 927, 949
Bsp143I GATC 3 cut(s) 102, 175, 427
Bsp19I CCATGG 1 cut(s) 975
BspACI CCGC 7 cut(s) 271, 273, 498, 601, 828, 864, 904
BspCNI CTCAG 3 cut(s) 536, 544, 939
BspDI ATCGAT 2 cut(s) 915, 937
BspFNI CGCG 1 cut(s) 273
BspHI TCATGA 3 cut(s) 34, 208, 784
BspLI GGNNCC 1 cut(s) 984
BspPI GGATC 1 cut(s) 110
BspQI GCTCTTC 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 481, 714
BssECI CCNNGG 5 cut(s) 271, 660, 739, 803, 975
BssMI GATC 3 cut(s) 102, 175, 427
BssNI GRCGYC 1 cut(s) 648
BssT1I CCWWGG 2 cut(s) 739, 975
Bst2UI CCWGG 1 cut(s) 662
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 648
BstDEI CTNAG 3 cut(s) 523, 531, 926
BstDSI CCRYGG 2 cut(s) 271, 975
BstF5I GGATG 7 cut(s) 72, 352, 670, 842, 884, 900, 959
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 3 cut(s) 105, 178, 430
BstMAI GTCTC 4 cut(s) 251, 426, 526, 694
BstMBI GATC 3 cut(s) 102, 175, 427
BstMWI GCNNNNNNNGC 3 cut(s) 237, 273, 654
BstNI CCWGG 1 cut(s) 662
BstSCI CCNGG 2 cut(s) 660, 803
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 3 cut(s) 288, 807, 843
BstV2I GAAGAC 3 cut(s) 27, 621, 777
Bsu15I ATCGAT 2 cut(s) 915, 937
BsuTUI ATCGAT 2 cut(s) 915, 937
BtgI CCRYGG 2 cut(s) 271, 975
BtsCI GGATG 7 cut(s) 72, 352, 670, 842, 884, 900, 959
CciI TCATGA 3 cut(s) 34, 208, 784
Cfr13I GGNCC 1 cut(s) 500
Cfr42I CCGCGG 1 cut(s) 274
ClaI ATCGAT 2 cut(s) 915, 937
CseI GACGC 1 cut(s) 637
CviAII CATG 6 cut(s) 35, 170, 209, 264, 785, 976
DdeI CTNAG 3 cut(s) 523, 531, 926
DpnI GATC 3 cut(s) 104, 177, 429
DpnII GATC 3 cut(s) 102, 175, 427
DraI TTTAAA 1 cut(s) 636
DraIII CACNNNGTG 1 cut(s) 56
DrdI GACNNNNNNGTC 1 cut(s) 551
DseDI GACNNNNNNGTC 1 cut(s) 551
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EciI GGCGGA 2 cut(s) 817, 853
Ecl136II GAGCTC 2 cut(s) 925, 947
Eco130I CCWWGG 2 cut(s) 739, 975
Eco24I GRGCYC 2 cut(s) 927, 949
Eco47I GGWCC 1 cut(s) 500
Eco53kI GAGCTC 2 cut(s) 925, 947
Eco57I CTGAAG 1 cut(s) 265
Eco88I CYCGRG 1 cut(s) 693
EcoICRI GAGCTC 2 cut(s) 925, 947
EcoRI GAATTC 1 cut(s) 581
EcoRII CCWGG 1 cut(s) 660
EcoT14I CCWWGG 2 cut(s) 739, 975
EcoT38I GRGCYC 2 cut(s) 927, 949
ErhI CCWWGG 2 cut(s) 739, 975
Esp3I CGTCTC 1 cut(s) 426
FaeI CATG 6 cut(s) 38, 173, 212, 267, 788, 979
FatI CATG 6 cut(s) 34, 169, 208, 263, 784, 975
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 274, 277, 821, 857
FokI GGATG 7 cut(s) 79, 339, 677, 829, 871, 887, 946
FriOI GRGCYC 2 cut(s) 927, 949
Fsp4HI GCNGC 4 cut(s) 274, 277, 821, 857
FspBI CTAG 2 cut(s) 414, 441
GluI GCNGC 4 cut(s) 274, 277, 821, 857
GsaI CCCAGC 1 cut(s) 196
HapII CCGG 2 cut(s) 805, 997
HgaI GACGC 1 cut(s) 637
Hin1I GRCGYC 1 cut(s) 648
Hin1II CATG 6 cut(s) 38, 173, 212, 267, 788, 979
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 4 cut(s) 130, 285, 527, 626
HpaII CCGG 2 cut(s) 805, 997
HphI GGTGA 1 cut(s) 351
Hpy166II GTNNAC 1 cut(s) 734
Hpy188I TCNGA 3 cut(s) 284, 526, 817
Hpy188III TCNNGA 8 cut(s) 35, 61, 209, 425, 538, 693, 785, 928
Hpy8I GTNNAC 1 cut(s) 734
Hpy99I CGWCG 3 cut(s) 578, 581, 853
HpyAV CCTTC 4 cut(s) 260, 264, 311, 402
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 6 cut(s) 50, 231, 474, 657, 777, 859
HpyF10VI GCNNNNNNNGC 3 cut(s) 237, 273, 654
HpyF3I CTNAG 3 cut(s) 523, 531, 926
HpySE526I ACGT 1 cut(s) 591
Hsp92I GRCGYC 1 cut(s) 648
Hsp92II CATG 6 cut(s) 38, 173, 212, 267, 788, 979
Ksp22I TGATCA 1 cut(s) 175
KspI CCGCGG 1 cut(s) 274
Kzo9I GATC 3 cut(s) 102, 175, 427
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 4 cut(s) 201, 853, 922, 944
LpnPI CCDG 7 cut(s) 60, 74, 206, 647, 674, 818, 913
Lsp1109I GCAGC 3 cut(s) 288, 807, 843
MaeI CTAG 2 cut(s) 414, 441
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 1 cut(s) 357
MalI GATC 3 cut(s) 104, 177, 429
MboI GATC 3 cut(s) 102, 175, 427
MboII GAAGA 5 cut(s) 32, 88, 249, 621, 782
MfeI CAATTG 1 cut(s) 241
MhlI GDGCHC 2 cut(s) 927, 949
MluCI AATT 3 cut(s) 241, 377, 581
MlyI GAGTC 2 cut(s) 521, 635
MseI TTAA 1 cut(s) 635
MslI CAYNNNNRTG 1 cut(s) 719
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 2 cut(s) 805, 997
MspR9I CCNGG 2 cut(s) 662, 805
MunI CAATTG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 662
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 3 cut(s) 237, 273, 654
NciI CCSGG 1 cut(s) 805
NcoI CCATGG 1 cut(s) 975
NdeII GATC 3 cut(s) 102, 175, 427
NlaIII CATG 6 cut(s) 38, 173, 212, 267, 788, 979
NlaIV GGNNCC 1 cut(s) 984
NmuCI GTSAC 1 cut(s) 357
PagI TCATGA 3 cut(s) 34, 208, 784
PciSI GCTCTTC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 130, 285
PkrI GCNGC 4 cut(s) 275, 278, 822, 858
PleI GAGTC 2 cut(s) 521, 634
PpsI GAGTC 2 cut(s) 521, 634
Psp124BI GAGCTC 2 cut(s) 927, 949
Psp6I CCWGG 1 cut(s) 660
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 1 cut(s) 660
PspN4I GGNNCC 1 cut(s) 984
PspPI GGNCC 1 cut(s) 500
RseI CAYNNNNRTG 1 cut(s) 719
SacI GAGCTC 2 cut(s) 927, 949
SacII CCGCGG 1 cut(s) 274
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 635
SatI GCNGC 4 cut(s) 274, 277, 821, 857
Sau3AI GATC 3 cut(s) 102, 175, 427
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 2 cut(s) 521, 635
ScrFI CCNGG 2 cut(s) 662, 805
SduI GDGCHC 2 cut(s) 927, 949
Sfr303I CCGCGG 1 cut(s) 274
SgrBI CCGCGG 1 cut(s) 274
SinI GGWCC 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 719
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 3 cut(s) 241, 377, 581
SsiI CCGC 7 cut(s) 271, 273, 498, 601, 828, 864, 904
SspMI CTAG 2 cut(s) 414, 441
SstI GAGCTC 2 cut(s) 927, 949
StyD4I CCNGG 2 cut(s) 660, 803
StyI CCWWGG 2 cut(s) 739, 975
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 1 cut(s) 594
TaqI TCGA 7 cut(s) 125, 426, 508, 537, 573, 915, 937
TasI AATT 3 cut(s) 241, 377, 581
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 2 cut(s) 130, 285
Tru1I TTAA 1 cut(s) 635
Tru9I TTAA 1 cut(s) 635
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 3 cut(s) 276, 820, 856
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 5 cut(s) 83, 143, 225, 698, 773
TspGWI ACGGA 2 cut(s) 345, 866
VpaK11BI GGWCC 1 cut(s) 500
XapI RAATTY 1 cut(s) 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
XspI CTAG 2 cut(s) 414, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.