Rw7G021680

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000145
Physical Location & Seq
Reverse (-)
25211634 .. 25213643
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G021680.1

Sequence Viewer

Length: 2010 bp
ATGGAGAAAACAATGGTGGAGGAGAGCGATTCCGGCGTCCTCGAGCAGCCAAAAATCGATCACGTCGTTGCCGTCCCTATCCCGACAATCCGAAAGATGATGGAGAAGAGCGATTTCGGCGTCATTGATATGGTTGTTGGGGAGCCTACCGGCGAGCCTGCTACCCGCGGGCCTATCCCGATGTCGAACAGCAGGTCTTTCCGTCCGATCTGCAATCAAAACCGAGCAAAGTTGGCAGAAGCCTGGCCGATGGTCAAATCGTCCTTGGAAGAACTCGGGTATTCATGCACAATGAGTACGGTTGATTCCACAGTCGTGGTGGTATCACCCTGGTCTGCGGCCCCAGATATGCGCAAGGCTGTTTATCTTTTCAATCTTTTGTTCAAGACTCCTGTTCCGTCACCTCTGGCACTAGAGTTGGCGCTCCATGGCAGGCAACATGATTTCATCAAGATTGGCACTCAAAAGGGTGGGCTACGCAAAAAATATGGGATCAACAAGGAGAAATTTGATAAACTGCGGATACGTCTCAAACGCTCCTTAAAGGAACTTGGTGATATGACCCACTGTACTCTTTTTCTGAACAAGAGCACTCTTACTGCCGTGGGTCCATCTCCAAGATTACACTGGGTCAGGAAGGTTTTGAAATTCTGCGCTATTGAGAAGTTGAGTCCTGCACATGTTATTAGGGTTTTCAACCGGAAGCTGAAACGAAAAACAGCGATGATGAAGAACAGCGATACAGTGATGATGGAGAAAAGCGATTTCGGCATCCCTGAGCAGCCAAAATTCAATCAGGAAGTTGGCGACCCTGTTCCGATGTTGAACAGCAGCGGGTCTTTCCGTCCGATCTCCAACACAAATCGAGCAAAGTTGACAGAAGCTTGGCCGATGGTCAATTTGTCCTTGGAAGAACTCGGGTATTCATGCGCAATGAGTACGGTTGATTCCACAGTCTTAGTGGTACCACCCTGTTCTACAGATCCAGATATCATGCGCAAGGCTAATTATCTTTTCCACCTTTTATTCAAGACTCCTGTTCCGGCACCTCTGGCGATAGAGTTGGCGCTCCATGGCAGGCAACATGATCTCATCAAGCTTGGCGCTCAAAAGGGTGGGATATGCAAAAAATATGGGATCAACAAGGAGAAATTTGATAAACTGCGGAGACGTCTCGAACGCTCCTTAAAGGAACTTGGTGATCTGACCCATTGTACTCTTTTTCTGAACAAGAGCACTCTTACTGCTGTGGGTCCATCTCCAAGATTACACTTGGTCAGGAGGGTTTTGGAAATCTGTATAAAAAGAAAGATAAGTCCTGCAGATGTTATTAGCACGTTGATATGCAAGTATGATCAAAAAATTTCATTTGTTCGGGATCTTGATGTCTCTAATGTCAAGAAGACTGGCCATTTGGTGAACAAAGATGGTGCAGCTGAAGTGACATTGCCCTTTCTTGAAAGACGAGCAACAAGGATGGAAGGAGCTTTGTCAATGGTGGAGTCATCTTTTGAGAAATATGGCATTTCTTGCACACTGAATCTGATTAAGCGTACCGTGACTATCTCAACAACTGGAGCGACCAAAGAGTACCCGGATGCTTTTGAGAAAGCTAGGCATCTTTTGCAACTTTTGACAACAACTAATGTCCCGCCATCTCGGGCTGTAGAATTAGCGATGAATGGCATGAAGCATGAATTCATCGAGATCGGGTTGCAAGAAGGTGGGCTTTGCTCATTGTATGGAATCAAGAAGGAACAATATGTTAAACGGCGTAAATGGCTCATTCGTTCTGCGAAGCGGATTCGAGAATTCACGGAGTGTGATATCTACTGCACAGGAGACACTATTACCGGTGTGAGTCCCTCTCTTGTGGGATTGAGTATATTCAGGAGGATTGTGTTGACCTGCATTGTTGAAGATACGGATCCTGCTCACCGTATAAGGAAATTTTTACGCTCAGAGTCGAAAAGGAAACTGAAGAAGATTATCAAGCGTTTGCTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

669

Amino Acids

75.32

Weight (kDa)

9.74

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 378 - 450 3.6e-07 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1174
Acc16I TGCGCA 3 cut(s) 353, 931, 998
Acc36I ACCTGC 2 cut(s) 183, 1916
Acc65I GGTACC 1 cut(s) 964
AccB1I GGYRCC 2 cut(s) 964, 1045
AccII CGCG 1 cut(s) 168
AciI CCGC 8 cut(s) 166, 168, 338, 520, 834, 1165, 1652, 1801
AclWI GGATC 6 cut(s) 500, 977, 1145, 1386, 1922, 1935
AcoI YGGCCR 3 cut(s) 245, 887, 1408
AcsI RAATTY 8 cut(s) 506, 647, 788, 1151, 1362, 1697, 1811, 1949
AcuI CTGAAG 2 cut(s) 1458, 2000
AcyI GRCGYC 3 cut(s) 36, 120, 1171
AdeI CACNNNGTG 1 cut(s) 1821
AfaI GTAC 7 cut(s) 298, 571, 940, 966, 1216, 1555, 1592
AflIII ACRYGT 1 cut(s) 679
AgeI ACCGGT 1 cut(s) 1853
AgsI TTSAA 9 cut(s) 373, 385, 646, 697, 793, 826, 1030, 1460, 1919
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 2 cut(s) 242, 329
AleI CACNNNNGTG 1 cut(s) 314
AluBI AGCT 6 cut(s) 706, 884, 1099, 1436, 1487, 1613
AluI AGCT 6 cut(s) 706, 884, 1099, 1436, 1487, 1613
Alw21I GWGCWC 2 cut(s) 593, 1238
Alw26I GTCTC 5 cut(s) 533, 1162, 1178, 1393, 1836
AlwI GGATC 6 cut(s) 500, 977, 1145, 1386, 1922, 1935
Ama87I CYCGRG 4 cut(s) 41, 275, 917, 1659
AoxI GGCC 5 cut(s) 170, 245, 339, 887, 1408
ApeKI GCWGC 4 cut(s) 46, 781, 831, 1433
ApoI RAATTY 8 cut(s) 506, 647, 788, 1151, 1362, 1697, 1811, 1949
ArsI GACNNNNNNTTYG 4 cut(s) 179, 211, 1396, 1428
AsiGI ACCGGT 1 cut(s) 1853
Asp718I GGTACC 1 cut(s) 964
AspLEI GCGC 7 cut(s) 354, 424, 656, 932, 999, 1069, 1106
AspS9I GGNCC 4 cut(s) 170, 340, 608, 1253
AsuC2I CCSGG 1 cut(s) 1595
AsuHPI GGTGA 6 cut(s) 318, 393, 566, 1211, 1429, 1928
AvaI CYCGRG 4 cut(s) 41, 275, 917, 1659
AvaII GGWCC 2 cut(s) 608, 1253
BalI TGGCCA 1 cut(s) 1410
BamHI GGATCC 1 cut(s) 1927
BanI GGYRCC 2 cut(s) 964, 1045
BbsI GAAGAC 1 cut(s) 1409
Bbv12I GWGCWC 2 cut(s) 593, 1238
BbvI GCAGC 4 cut(s) 58, 793, 843, 1445
BccI CCATC 9 cut(s) 94, 244, 619, 745, 886, 1264, 1421, 1471, 1663
BceAI ACGGC 3 cut(s) 56, 587, 1787
BciT130I CCWGG 2 cut(s) 244, 331
BciVI GTATCC 1 cut(s) 516
BclI TGATCA 1 cut(s) 1354
BcnI CCSGG 1 cut(s) 1595
BcoDI GTCTC 5 cut(s) 533, 1162, 1178, 1393, 1836
BfaI CTAG 2 cut(s) 413, 1614
BfmI CTRYAG 3 cut(s) 978, 1320, 1665
BfoI RGCGCY 3 cut(s) 425, 1070, 1107
BfuAI ACCTGC 2 cut(s) 183, 1916
BfuI GTATCC 1 cut(s) 516
BisI GCNGC 5 cut(s) 47, 339, 782, 832, 1434
BlsI GCNGC 5 cut(s) 48, 340, 783, 833, 1435
Bme1390I CCNGG 3 cut(s) 244, 331, 1595
Bme18I GGWCC 2 cut(s) 608, 1253
BmeT110I CYCGRG 4 cut(s) 41, 275, 917, 1659
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 4 cut(s) 170, 340, 608, 1253
BmiI GGNNCC 7 cut(s) 144, 342, 609, 966, 1047, 1254, 1929
BmrFI CCNGG 3 cut(s) 244, 331, 1595
BmrI ACTGGG 1 cut(s) 637
BmsI GCATC 3 cut(s) 780, 1588, 1627
BmuI ACTGGG 1 cut(s) 637
BpiI GAAGAC 1 cut(s) 1409
BplI GAGNNNNNCTC 2 cut(s) 1852, 1884
BpmI CTGGAG 1 cut(s) 1596
Bpu10I CCTNAGC 1 cut(s) 777
BpuMI CCSGG 1 cut(s) 1595
Bsa29I ATCGAT 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 1926
BsaHI GRCGYC 3 cut(s) 36, 120, 1171
BsaJI CCNNGG 7 cut(s) 166, 264, 329, 427, 603, 906, 1072
BsaWI WCCGGW 2 cut(s) 699, 1853
Bse118I RCCGGY 2 cut(s) 149, 1853
Bse1I ACTGG 3 cut(s) 632, 1411, 1579
Bse3DI GCAATG 2 cut(s) 939, 1445
Bse8I GATNNNNATC 1 cut(s) 1926
BseBI CCWGG 2 cut(s) 244, 331
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 7 cut(s) 166, 264, 329, 427, 603, 906, 1072
BseGI GGATG 3 cut(s) 771, 1482, 1603
BseJI GATNNNNATC 1 cut(s) 1926
BseMI GCAATG 2 cut(s) 939, 1445
BseMII CTCAG 2 cut(s) 768, 1974
BseNI ACTGG 3 cut(s) 632, 1411, 1579
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 4 cut(s) 58, 793, 843, 1445
BsgI GTGCAG 3 cut(s) 660, 1452, 1819
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 5 cut(s) 172, 247, 341, 889, 1410
BshNI GGYRCC 2 cut(s) 964, 1045
BshTI ACCGGT 1 cut(s) 1853
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 593, 1238
BsiHKCI CYCGRG 4 cut(s) 41, 275, 917, 1659
BsiSI CCGG 6 cut(s) 33, 150, 700, 1043, 1595, 1854
BslFI GGGAC 3 cut(s) 59, 1634, 1848
BsmAI GTCTC 5 cut(s) 533, 1162, 1178, 1393, 1836
BsmBI CGTCTC 3 cut(s) 533, 1162, 1178
BsmFI GGGAC 3 cut(s) 59, 1634, 1848
BsnI GGCC 5 cut(s) 172, 247, 341, 889, 1410
BsoBI CYCGRG 4 cut(s) 41, 275, 917, 1659
Bsp1286I GDGCHC 2 cut(s) 593, 1238
Bsp19I CCATGG 2 cut(s) 427, 1072
BspACI CCGC 8 cut(s) 166, 168, 338, 520, 834, 1165, 1652, 1801
BspANI GGCC 5 cut(s) 172, 247, 341, 889, 1410
BspCNI CTCAG 2 cut(s) 769, 1973
BspDI ATCGAT 1 cut(s) 57
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 7 cut(s) 144, 342, 609, 966, 1047, 1254, 1929
BspMAI CTGCAG 1 cut(s) 1324
BspMI ACCTGC 2 cut(s) 183, 1916
BspPI GGATC 6 cut(s) 500, 977, 1145, 1386, 1922, 1935
BspQI GCTCTTC 1 cut(s) 101
BspT107I GGYRCC 2 cut(s) 964, 1045
BsrDI GCAATG 2 cut(s) 939, 1445
BsrFI RCCGGY 2 cut(s) 149, 1853
BsrI ACTGG 3 cut(s) 632, 1411, 1579
BssAI RCCGGY 2 cut(s) 149, 1853
BssECI CCNNGG 7 cut(s) 166, 264, 329, 427, 603, 906, 1072
BssNI GRCGYC 3 cut(s) 36, 120, 1171
BssT1I CCWWGG 4 cut(s) 264, 427, 906, 1072
Bst2UI CCWGG 2 cut(s) 244, 331
Bst4CI ACNGT 8 cut(s) 301, 313, 569, 745, 943, 955, 1558, 1940
Bst6I CTCTTC 1 cut(s) 101
BstACI GRCGYC 3 cut(s) 36, 120, 1171
BstAPI GCANNNNNTGC 2 cut(s) 1530, 1624
BstC8I GCNNGC 5 cut(s) 155, 159, 170, 434, 1079
BstDEI CTNAG 3 cut(s) 777, 958, 1960
BstDSI CCRYGG 4 cut(s) 166, 427, 603, 1072
BstF5I GGATG 3 cut(s) 771, 1482, 1603
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 3 cut(s) 425, 1070, 1107
BstHHI GCGC 7 cut(s) 354, 424, 656, 932, 999, 1069, 1106
BstMAI GTCTC 5 cut(s) 533, 1162, 1178, 1393, 1836
BstMWI GCNNNNNNNGC 8 cut(s) 33, 117, 233, 768, 1052, 1530, 1624, 1780
BstNI CCWGG 2 cut(s) 244, 331
BstNSI RCATGY 1 cut(s) 683
BstSCI CCNGG 3 cut(s) 242, 329, 1593
BstSFI CTRYAG 3 cut(s) 978, 1320, 1665
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 4 cut(s) 58, 793, 843, 1445
BstV2I GAAGAC 1 cut(s) 1409
BstX2I RGATCY 3 cut(s) 982, 1378, 1927
BstXI CCANNNNNNTGG 1 cut(s) 316
BstYI RGATCY 3 cut(s) 982, 1378, 1927
Bsu15I ATCGAT 1 cut(s) 57
BsuI GTATCC 1 cut(s) 516
BsuRI GGCC 5 cut(s) 172, 247, 341, 889, 1410
BsuTUI ATCGAT 1 cut(s) 57
BtgI CCRYGG 4 cut(s) 166, 427, 603, 1072
BtgZI GCGATG 2 cut(s) 737, 1691
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 3 cut(s) 771, 1482, 1603
BtsIMutI CAGTG 4 cut(s) 565, 625, 750, 1535
BveI ACCTGC 2 cut(s) 183, 1916
Cac8I GCNNGC 5 cut(s) 155, 159, 170, 434, 1079
CfoI GCGC 7 cut(s) 354, 424, 656, 932, 999, 1069, 1106
Cfr10I RCCGGY 2 cut(s) 149, 1853
Cfr13I GGNCC 4 cut(s) 170, 340, 608, 1253
Cfr42I CCGCGG 1 cut(s) 169
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 2 cut(s) 25, 109
Csp6I GTAC 7 cut(s) 297, 570, 939, 965, 1215, 1554, 1591
CspAI ACCGGT 1 cut(s) 1853
CviQI GTAC 7 cut(s) 297, 570, 939, 965, 1215, 1554, 1591
DdeI CTNAG 3 cut(s) 777, 958, 1960
DraIII CACNNNGTG 1 cut(s) 1821
EaeI YGGCCR 3 cut(s) 245, 887, 1408
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 4 cut(s) 264, 427, 906, 1072
Eco32I GATATC 2 cut(s) 991, 1828
Eco47I GGWCC 2 cut(s) 608, 1253
Eco57I CTGAAG 2 cut(s) 1458, 2000
Eco88I CYCGRG 4 cut(s) 41, 275, 917, 1659
EcoRI GAATTC 2 cut(s) 1697, 1811
EcoRII CCWGG 2 cut(s) 242, 329
EcoRV GATATC 2 cut(s) 991, 1828
EcoT14I CCWWGG 4 cut(s) 264, 427, 906, 1072
ErhI CCWWGG 4 cut(s) 264, 427, 906, 1072
Esp3I CGTCTC 3 cut(s) 533, 1162, 1178
FalI AAGNNNNNCTT 2 cut(s) 1713, 1745
FaqI GGGAC 3 cut(s) 59, 1634, 1848
FauI CCCGC 4 cut(s) 161, 173, 827, 1659
FbaI TGATCA 1 cut(s) 1354
Fnu4HI GCNGC 5 cut(s) 47, 339, 782, 832, 1434
FokI GGATG 3 cut(s) 758, 1489, 1610
Fsp4HI GCNGC 5 cut(s) 47, 339, 782, 832, 1434
FspBI CTAG 2 cut(s) 413, 1614
FspI TGCGCA 3 cut(s) 353, 931, 998
GlaI GCGC 7 cut(s) 353, 423, 655, 931, 998, 1068, 1105
GluI GCNGC 5 cut(s) 47, 339, 782, 832, 1434
GsuI CTGGAG 1 cut(s) 1596
HaeII RGCGCY 3 cut(s) 425, 1070, 1107
HaeIII GGCC 5 cut(s) 172, 247, 341, 889, 1410
HapII CCGG 6 cut(s) 33, 150, 700, 1043, 1595, 1854
HgaI GACGC 2 cut(s) 25, 109
HhaI GCGC 7 cut(s) 354, 424, 656, 932, 999, 1069, 1106
Hin1I GRCGYC 3 cut(s) 36, 120, 1171
Hin6I GCGC 7 cut(s) 352, 422, 654, 930, 997, 1067, 1104
HinP1I GCGC 7 cut(s) 352, 422, 654, 930, 997, 1067, 1104
HincII GTYRAC 2 cut(s) 876, 1905
HindII GTYRAC 2 cut(s) 876, 1905
HindIII AAGCTT 2 cut(s) 882, 1097
HpaII CCGG 6 cut(s) 33, 150, 700, 1043, 1595, 1854
HphI GGTGA 6 cut(s) 318, 393, 566, 1211, 1429, 1928
Hpy166II GTNNAC 3 cut(s) 876, 1420, 1905
Hpy8I GTNNAC 3 cut(s) 876, 1420, 1905
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 4 cut(s) 631, 1475, 1715, 1747
HpyCH4III ACNGT 8 cut(s) 301, 313, 569, 745, 943, 955, 1558, 1940
HpyCH4IV ACGT 4 cut(s) 63, 526, 1171, 1337
HpyF10VI GCNNNNNNNGC 8 cut(s) 33, 117, 233, 768, 1052, 1530, 1624, 1780
HpyF3I CTNAG 3 cut(s) 777, 958, 1960
HpySE526I ACGT 4 cut(s) 63, 526, 1171, 1337
Hsp92I GRCGYC 3 cut(s) 36, 120, 1171
HspAI GCGC 7 cut(s) 352, 422, 654, 930, 997, 1067, 1104
KpnI GGTACC 1 cut(s) 968
Ksp22I TGATCA 1 cut(s) 1354
KspI CCGCGG 1 cut(s) 169
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 7 cut(s) 142, 429, 542, 1074, 1187, 1484, 1577
Lsp1109I GCAGC 4 cut(s) 58, 793, 843, 1445
LweI GCATC 3 cut(s) 780, 1588, 1627
MaeI CTAG 2 cut(s) 413, 1614
MaeII ACGT 4 cut(s) 63, 526, 1171, 1337
MaeIII GTNAC 3 cut(s) 399, 1441, 1558
MboII GAAGA 8 cut(s) 118, 281, 742, 923, 1414, 1931, 1993, 1996
MflI RGATCY 3 cut(s) 982, 1378, 1927
MhlI GDGCHC 2 cut(s) 593, 1238
MlsI TGGCCA 1 cut(s) 1410
MluNI TGGCCA 1 cut(s) 1410
MlyI GAGTC 6 cut(s) 382, 679, 1027, 1511, 1870, 1973
MmeI TCCRAC 1 cut(s) 879
MnlI CCTC 7 cut(s) 13, 50, 414, 1059, 1275, 1876, 1887
Mox20I TGGCCA 1 cut(s) 1410
MscI TGGCCA 1 cut(s) 1410
MseI TTAA 4 cut(s) 542, 1187, 1548, 1767
MslI CAYNNNNRTG 2 cut(s) 128, 314
Msp20I TGGCCA 1 cut(s) 1410
MspA1I CMGCKG 3 cut(s) 168, 834, 1436
MspI CCGG 6 cut(s) 33, 150, 700, 1043, 1595, 1854
MspR9I CCNGG 3 cut(s) 244, 331, 1595
MvaI CCWGG 2 cut(s) 244, 331
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 8 cut(s) 33, 117, 233, 768, 1052, 1530, 1624, 1780
NciI CCSGG 1 cut(s) 1595
NcoI CCATGG 2 cut(s) 427, 1072
NlaIV GGNNCC 7 cut(s) 144, 342, 609, 966, 1047, 1254, 1929
NmuCI GTSAC 3 cut(s) 399, 1441, 1558
NsbI TGCGCA 3 cut(s) 353, 931, 998
NspI RCATGY 1 cut(s) 683
OliI CACNNNNGTG 1 cut(s) 314
PaeR7I CTCGAG 1 cut(s) 41
PciI ACATGT 1 cut(s) 679
PciSI GCTCTTC 1 cut(s) 101
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 69
PfeI GAWTC 6 cut(s) 29, 305, 947, 1540, 1746, 1804
PinAI ACCGGT 1 cut(s) 1853
PkrI GCNGC 5 cut(s) 48, 340, 783, 833, 1435
PleI GAGTC 6 cut(s) 382, 678, 1027, 1510, 1869, 1972
PpsI GAGTC 6 cut(s) 382, 678, 1027, 1510, 1869, 1972
PscI ACATGT 1 cut(s) 679
Psp6I CCWGG 2 cut(s) 242, 329
PspGI CCWGG 2 cut(s) 242, 329
PspN4I GGNNCC 7 cut(s) 144, 342, 609, 966, 1047, 1254, 1929
PspPI GGNCC 4 cut(s) 170, 340, 608, 1253
PspXI VCTCGAGB 1 cut(s) 41
PstI CTGCAG 1 cut(s) 1324
PsuI RGATCY 3 cut(s) 982, 1378, 1927
PvuII CAGCTG 1 cut(s) 1436
RsaI GTAC 7 cut(s) 298, 571, 940, 966, 1216, 1555, 1592
RsaNI GTAC 7 cut(s) 297, 570, 939, 965, 1215, 1554, 1591
RseI CAYNNNNRTG 2 cut(s) 128, 314
SacII CCGCGG 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 4 cut(s) 542, 1187, 1548, 1767
SatI GCNGC 5 cut(s) 47, 339, 782, 832, 1434
Sau96I GGNCC 4 cut(s) 170, 340, 608, 1253
SchI GAGTC 6 cut(s) 382, 679, 1027, 1511, 1870, 1973
ScrFI CCNGG 3 cut(s) 244, 331, 1595
SduI GDGCHC 2 cut(s) 593, 1238
SfaNI GCATC 3 cut(s) 780, 1588, 1627
SfcI CTRYAG 3 cut(s) 978, 1320, 1665
Sfr274I CTCGAG 1 cut(s) 41
Sfr303I CCGCGG 1 cut(s) 169
SgrBI CCGCGG 1 cut(s) 169
SinI GGWCC 2 cut(s) 608, 1253
SlaI CTCGAG 1 cut(s) 41
SmiMI CAYNNNNRTG 2 cut(s) 128, 314
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SsiI CCGC 8 cut(s) 166, 168, 338, 520, 834, 1165, 1652, 1801
SspMI CTAG 2 cut(s) 413, 1614
StyD4I CCNGG 3 cut(s) 242, 329, 1593
StyI CCWWGG 4 cut(s) 264, 427, 906, 1072
TaaI ACNGT 8 cut(s) 301, 313, 569, 745, 943, 955, 1558, 1940
TaiI ACGT 4 cut(s) 66, 529, 1174, 1340
TaqI TCGA 8 cut(s) 42, 57, 185, 865, 1176, 1704, 1807, 1967
TatI WGTACW 2 cut(s) 569, 1214
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 6 cut(s) 29, 305, 947, 1540, 1746, 1804
Tru1I TTAA 4 cut(s) 542, 1187, 1548, 1767
Tru9I TTAA 4 cut(s) 542, 1187, 1548, 1767
TscAI CASTG 4 cut(s) 572, 632, 750, 1542
TseFI GTSAC 3 cut(s) 399, 1441, 1558
TseI GCWGC 4 cut(s) 46, 781, 831, 1433
Tsp45I GTSAC 3 cut(s) 399, 1441, 1558
TspDTI ATGAA 9 cut(s) 273, 436, 743, 915, 1356, 1690, 1694, 1703, 1710
TspGWI ACGGA 5 cut(s) 191, 387, 833, 1832, 1940
TspRI CASTG 4 cut(s) 572, 632, 750, 1542
VpaK11BI GGWCC 2 cut(s) 608, 1253
XapI RAATTY 8 cut(s) 506, 647, 788, 1151, 1362, 1697, 1811, 1949
XceI RCATGY 1 cut(s) 683
XcmI CCANNNNNNNNNTGG 3 cut(s) 316, 624, 958
XhoI CTCGAG 1 cut(s) 41
XspI CTAG 2 cut(s) 413, 1614
ZraI GACGTC 1 cut(s) 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.