Rw3G014000

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000145
Physical Location & Seq
Forward (+)
13778841 .. 13779730
890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G014000.1

Sequence Viewer

Length: 324 bp
ATGCATCATGACCACATCAGAACTGGGTATCAAGAAGGTGGGCTCGCTGCAATACATGGGATCAAGAAGGAGCGATTTGATAAACGGAGGATCAGATTCTTTGAAAATGTAAAGGACCTTGCATGCCTGATGAGTTGTCATCTGTATGCTAACGGAAACACTGTGACTGCCGCGGGAACTTCACTTGAGCATGTAAAGGTGGTCAGAATGGTCGTTGAAAGGTGTTATGTTGAAAATGTGAATCCTGCAACTATTGTCAGTCGCTTAAAAATGAGGAAAGATATGCTTAATGTGGAGAGAAGGCTTCAAGCTCTGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.35

Weight (kDa)

9.72

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 22 - 95 7.7e-09 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 2 cut(s) 171, 173
AclWI GGATC 2 cut(s) 68, 98
AgsI TTSAA 4 cut(s) 104, 218, 233, 308
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
AlwI GGATC 2 cut(s) 68, 98
ApeKI GCWGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 115
AvaII GGWCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 34
BisI GCNGC 2 cut(s) 48, 171
BlsI GCNGC 2 cut(s) 49, 172
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 60, 90
BspACI CCGC 2 cut(s) 171, 173
BspFNI CGCG 1 cut(s) 173
BspHI TCATGA 1 cut(s) 7
BspPI GGATC 2 cut(s) 68, 98
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 60, 90
Bst4CI ACNGT 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 45, 124
BstDSI CCRYGG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 2 cut(s) 63, 93
BstMBI GATC 2 cut(s) 60, 90
BstNSI RCATGY 2 cut(s) 126, 194
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 34
BtgI CCRYGG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 45, 124
CciI TCATGA 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 115
Cfr42I CCGCGG 1 cut(s) 174
CviAII CATG 4 cut(s) 8, 56, 123, 191
CviJI RGCY 3 cut(s) 43, 304, 311
CviKI_1 RGCY 3 cut(s) 43, 304, 311
DpnI GATC 2 cut(s) 62, 92
DpnII GATC 2 cut(s) 60, 90
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 4 cut(s) 11, 59, 126, 194
FaiI YATR 7 cut(s) 9, 57, 124, 147, 192, 228, 284
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 4 cut(s) 7, 55, 122, 190
FauI CCCGC 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 48, 171
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 48, 171
GluI GCNGC 2 cut(s) 48, 171
Hin1II CATG 4 cut(s) 11, 59, 126, 194
HinfI GANTC 2 cut(s) 96, 241
Hpy188I TCNGA 3 cut(s) 20, 95, 206
Hpy188III TCNNGA 3 cut(s) 8, 32, 64
HpyAV CCTTC 3 cut(s) 29, 61, 294
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 4 cut(s) 4, 50, 122, 248
Hsp92II CATG 4 cut(s) 11, 59, 126, 194
KspI CCGCGG 1 cut(s) 174
Kzo9I GATC 2 cut(s) 60, 90
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 9, 140, 258
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 62, 92
MboI GATC 2 cut(s) 60, 90
MhlI GDGCHC 1 cut(s) 45
MnlI CCTC 2 cut(s) 81, 267
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 266, 288
MslI CAYNNNNRTG 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 173
MvnI CGCG 1 cut(s) 173
NdeII GATC 2 cut(s) 60, 90
NlaIII CATG 4 cut(s) 11, 59, 126, 194
NmuCI GTSAC 1 cut(s) 163
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 126, 194
PaeI GCATGC 1 cut(s) 126
PagI TCATGA 1 cut(s) 7
PfeI GAWTC 2 cut(s) 96, 241
PkrI GCNGC 2 cut(s) 49, 172
PpuMI RGGWCCY 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 115
PspPI GGNCC 1 cut(s) 115
PspPPI RGGWCCY 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 144
SacII CCGCGG 1 cut(s) 174
SaqAI TTAA 2 cut(s) 266, 288
SatI GCNGC 2 cut(s) 48, 171
Sau3AI GATC 2 cut(s) 60, 90
Sau96I GGNCC 1 cut(s) 115
SduI GDGCHC 1 cut(s) 45
SetI ASST 5 cut(s) 40, 120, 201, 224, 313
SfaNI GCATC 1 cut(s) 13
Sfr303I CCGCGG 1 cut(s) 174
SgrBI CCGCGG 1 cut(s) 174
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SphI GCATGC 1 cut(s) 126
SsiI CCGC 2 cut(s) 171, 173
TaaI ACNGT 1 cut(s) 163
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 2 cut(s) 96, 241
Tru1I TTAA 2 cut(s) 266, 288
Tru9I TTAA 2 cut(s) 266, 288
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 163
TspGWI ACGGA 2 cut(s) 100, 168
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 115
XceI RCATGY 2 cut(s) 126, 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 20
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.