Rmu_sc0000302.1_g000041

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000302.1
OG0000145
Physical Location & Seq
Reverse (-)
124690 .. 126878
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000302.1_g000041.1.cds

Sequence Viewer

Length: 648 bp
atggagatcggcgccggtcacaaatcgaagatgccgtgcccaaactccgaccacatggagtcggaaaagtctgaagtgacctccttcaccgataaattgttttgggcagtaccaaagttgaaagatgcttggccggaggtggaatcggctttacaagagcatggaatttcttacacactcaatctggctgagctttacatgactgtctcaaccaccccaaggaccaaagatccagacatcattcacagggctagggagattattgtgcttctgtccaaaactactactccgacatatgtggtaattaagatattgaatggtgatatgcatcatgaccacatcagaactgggtatcaagaaggtgggctcgctgcaatacatgggatcaagaaggagcgatttgataaacggaggatcagattctttgaaaatgtaaaggaccttgcatgcctgatgagttgtcatctgtatgttaacggaaacactgtgactgccgcgggaacttcacttgagcatgtaaaggtggtcagaatggtcgttgaaaggtgttatgttgaaaatgtgaatcctgcaactattgtcagtcgcttaaaaatgaggaaagatatgcttaatgtggagagaaggcttcaagctctgttgatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.51

Weight (kDa)

8.83

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AccII CGCG 1 cut(s) 497
AciI CCGC 2 cut(s) 495, 497
AclWI GGATC 3 cut(s) 224, 392, 422
AcoI YGGCCR 1 cut(s) 131
AcsI RAATTY 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 6 cut(s) 121, 316, 428, 542, 557, 632
AluBI AGCT 2 cut(s) 193, 635
AluI AGCT 2 cut(s) 193, 635
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 3 cut(s) 224, 392, 422
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 165
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 222, 439
AsuHPI GGTGA 2 cut(s) 79, 332
AvaII GGWCC 2 cut(s) 222, 439
BaeGI GKGCMC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 11
BanII GRGCYC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 358
BceAI ACGGC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 2 cut(s) 372, 495
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 2 cut(s) 373, 496
Bme18I GGWCC 2 cut(s) 222, 439
BmgT120I GGNCC 2 cut(s) 222, 439
BmiI GGNNCC 1 cut(s) 13
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 3 cut(s) 21, 115, 337
BmuI ACTGGG 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 218, 495
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 352
Bse8I GATNNNNATC 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 218, 495
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 352
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 1 cut(s) 133
BshNI GGYRCC 1 cut(s) 11
BsiSI CCGG 2 cut(s) 15, 134
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 211
BsnI GGCC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 41, 369
Bsp143I GATC 4 cut(s) 6, 229, 384, 414
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 2 cut(s) 495, 497
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 497
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 3 cut(s) 224, 392, 422
BspT107I GGYRCC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 218, 495
BssMI GATC 4 cut(s) 6, 229, 384, 414
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 218
Bst4CI ACNGT 2 cut(s) 205, 487
BstACI GRCGYC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 369, 448
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 495
BstFNI CGCG 1 cut(s) 497
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 4 cut(s) 9, 232, 387, 417
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 4 cut(s) 6, 229, 384, 414
BstNSI RCATGY 2 cut(s) 450, 518
BstSLI GKGCMC 1 cut(s) 41
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 495
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 2 cut(s) 369, 448
CciI TCATGA 1 cut(s) 331
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 222, 439
Cfr42I CCGCGG 1 cut(s) 498
Csp6I GTAC 1 cut(s) 110
CviAII CATG 7 cut(s) 55, 161, 199, 332, 380, 447, 515
CviJI RGCY 8 cut(s) 133, 149, 188, 193, 251, 367, 628, 635
CviKI_1 RGCY 8 cut(s) 133, 149, 188, 193, 251, 367, 628, 635
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 189
DinI GGCGCC 1 cut(s) 13
DpnI GATC 4 cut(s) 8, 231, 386, 416
DpnII GATC 4 cut(s) 6, 229, 384, 414
EaeI YGGCCR 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 222, 439
Eco57I CTGAAG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 369
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 7 cut(s) 58, 164, 202, 335, 383, 450, 518
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FatI CATG 7 cut(s) 54, 160, 198, 331, 379, 446, 514
FauI CCCGC 1 cut(s) 490
FauNDI CATATG 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 372, 495
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 372, 495
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 13
GluI GCNGC 2 cut(s) 372, 495
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 1 cut(s) 133
HapII CCGG 2 cut(s) 15, 134
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 7 cut(s) 58, 164, 202, 335, 383, 450, 518
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HinfI GANTC 4 cut(s) 59, 143, 420, 565
HpaI GTTAAC 1 cut(s) 475
HpaII CCGG 2 cut(s) 15, 134
HphI GGTGA 2 cut(s) 79, 332
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 7 cut(s) 49, 64, 73, 291, 344, 419, 530
Hpy188III TCNNGA 4 cut(s) 233, 332, 356, 388
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 4 cut(s) 94, 353, 385, 618
HpyCH4III ACNGT 2 cut(s) 205, 487
HpyCH4V TGCA 4 cut(s) 328, 374, 446, 572
HpyF3I CTNAG 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 7 cut(s) 58, 164, 202, 335, 383, 450, 518
HspAI GCGC 1 cut(s) 12
KasI GGCGCC 1 cut(s) 11
KspAI GTTAAC 1 cut(s) 475
KspI CCGCGG 1 cut(s) 498
Kzo9I GATC 4 cut(s) 6, 229, 384, 414
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 8 cut(s) 28, 147, 170, 232, 246, 333, 464, 582
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 3 cut(s) 21, 115, 337
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 3 cut(s) 17, 76, 487
MalI GATC 4 cut(s) 8, 231, 386, 416
MboI GATC 4 cut(s) 6, 229, 384, 414
MboII GAAGA 1 cut(s) 40
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 2 cut(s) 41, 369
MluCI AATT 3 cut(s) 95, 165, 303
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 3 cut(s) 42, 72, 314
MnlI CCTC 4 cut(s) 91, 130, 405, 591
Mph1103I ATGCAT 1 cut(s) 330
MseI TTAA 4 cut(s) 306, 474, 590, 612
MslI CAYNNNNRTG 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 2 cut(s) 15, 134
MvnI CGCG 1 cut(s) 497
NarI GGCGCC 1 cut(s) 12
NdeI CATATG 1 cut(s) 295
NdeII GATC 4 cut(s) 6, 229, 384, 414
NlaIII CATG 7 cut(s) 58, 164, 202, 335, 383, 450, 518
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 3 cut(s) 17, 76, 487
NsiI ATGCAT 1 cut(s) 330
NspI RCATGY 2 cut(s) 450, 518
PaeI GCATGC 1 cut(s) 450
PagI TCATGA 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 3 cut(s) 143, 420, 565
PkrI GCNGC 2 cut(s) 373, 496
PleI GAGTC 1 cut(s) 67
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 439
Psp5II RGGWCCY 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 2 cut(s) 222, 439
PspPPI RGGWCCY 1 cut(s) 439
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 468
SacII CCGCGG 1 cut(s) 498
SaqAI TTAA 4 cut(s) 306, 474, 590, 612
SatI GCNGC 2 cut(s) 372, 495
Sau3AI GATC 4 cut(s) 6, 229, 384, 414
Sau96I GGNCC 2 cut(s) 222, 439
SchI GAGTC 1 cut(s) 68
SduI GDGCHC 2 cut(s) 41, 369
SetI ASST 8 cut(s) 83, 141, 195, 364, 444, 525, 548, 637
SfaNI GCATC 3 cut(s) 21, 115, 337
SfoI GGCGCC 1 cut(s) 13
Sfr303I CCGCGG 1 cut(s) 498
SgrBI CCGCGG 1 cut(s) 498
SinI GGWCC 2 cut(s) 222, 439
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
SphI GCATGC 1 cut(s) 450
Sse9I AATT 3 cut(s) 95, 165, 303
SsiI CCGC 2 cut(s) 495, 497
SspDI GGCGCC 1 cut(s) 11
SspMI CTAG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 2 cut(s) 205, 487
TaqI TCGA 1 cut(s) 26
TasI AATT 3 cut(s) 95, 165, 303
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 3 cut(s) 143, 420, 565
Tru1I TTAA 4 cut(s) 306, 474, 590, 612
Tru9I TTAA 4 cut(s) 306, 474, 590, 612
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 3 cut(s) 17, 76, 487
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 3 cut(s) 17, 76, 487
TspGWI ACGGA 2 cut(s) 424, 492
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 2 cut(s) 222, 439
XapI RAATTY 1 cut(s) 165
XceI RCATGY 2 cut(s) 450, 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XspI CTAG 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.