Rorug05G0014500

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000145
Physical Location & Seq
Forward (+)
952889 .. 956718
3830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0014500.1

Sequence Viewer

Length: 1107 bp
ATGGCAGCGGCGACTCTGTCTTCGACGGTGTTTGCAATCCCAACTTCCTGCTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTCTCAAAGCAAGGACCTTGAAGACTTCAGCTTTTTCTTCTTCGTCCTCGCTCTGCTCTCTGAATCGTTTTCCTTGCAATCCCATCTCAGCTCGTCCATCGTGTTCCAGAAACTTGTATAGGGTACATGCAACTATTCTCCAAGATGAAGAAGAGAAAGTGGTGGTGGAGGAGTCCTTTGAGTTCAAGGCAACTACGTCTGATGAAGTGAAAGCCAGCAGTGGGGAGGCCTCTGAGAGTGAGCCTTCTAGTGATTTTGAGAAATGGGTTATCAAGGGTGAACAATCCATCAACGTTTTCCTTACGGATACAGTGATTAAGGTACTTGATACTCTTTACCACGACCGTGATTATGCCAGGTTCTTTGTACTGGAAACTATTGCAAGGGTTCCCTACTTCGCCTTTATGTCTGTTCTACACTTGTATGAGACTTTTGGCTGGTGGAGAAGAAGAGATTATTTGAAAGTGCATTTTGCTGAGAGCTGGAATGAGATGCACCACTTGCTTATCATGGAAGAATTGGGAGGAAATGCTTGGTGGTTTGATCGCTTTCTTGCTCAGCACATTGCGGTCTTCTATTACTTTATGACAGTTTTTATGTATTTAATAAGCCCACGAATGGCATATCACTTCTCTGAATGTGTAGAGGGCCATGCATTTTCAACATATGACAAGTTTATCAAGGCTGAAGGAGAGAATCTGAAAAAATTGCCTGCTCCTGAGGTTGCTGTAAAATACTACACTGGAGGTGACTTGTACTTGTTTGATGAATTTCAAACTTCCAGACCTCCCAATTCTCGAAGGCCGAAAATAGAGAATTTGTTCGATGTATTTCTGAACATAAGAGATGATGAAGCTGAGCACTGTAAGACGATGAAGGCCTGCCAAACTCACGGGAACCTCTTTTCTCCTCATTCAATTGTAGAAGATCCCTTGGAAGATGAGTCTATCTGTGTCGCTCCTCAAACAGATTGTGAAGGTATTGTAGATTGTATTACAAAACCCGTTGCAACGAAACCAGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

368

Amino Acids

41.91

Weight (kDa)

5.31

Isoelectric Point (pI)

54.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AOX PF01786 126 - 322 4e-42 Alternative oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 647
AclI AACGTT 1 cut(s) 372
AclWI GGATC 1 cut(s) 1001
AcsI RAATTY 2 cut(s) 848, 895
AcuI CTGAAG 2 cut(s) 90, 786
AfaI GTAC 4 cut(s) 204, 402, 447, 836
AfiI CCNNNNNNNGG 2 cut(s) 300, 697
AgsI TTSAA 6 cut(s) 100, 265, 541, 741, 854, 996
AjnI CCWGG 1 cut(s) 434
AleI CACNNNNGTG 1 cut(s) 423
AluBI AGCT 4 cut(s) 110, 170, 561, 935
AluI AGCT 4 cut(s) 110, 170, 561, 935
Alw21I GWGCWC 1 cut(s) 942
Alw26I GTCTC 2 cut(s) 84, 500
AlwI GGATC 1 cut(s) 1001
AoxI GGCC 4 cut(s) 306, 727, 881, 957
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 848, 895
ArsI GACNNNNNNTTYG 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 899
AspS9I GGNCC 2 cut(s) 93, 727
AsuHPI GGTGA 2 cut(s) 368, 839
AvaII GGWCC 1 cut(s) 93
AxyI CCTNAGG 1 cut(s) 798
BbsI GAAGAC 3 cut(s) 12, 107, 643
Bbv12I GWGCWC 1 cut(s) 942
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 170, 184, 374
BciT130I CCWGG 1 cut(s) 436
BciVI GTATCC 1 cut(s) 379
BcoDI GTCTC 2 cut(s) 84, 500
BfaI CTAG 1 cut(s) 327
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 2 cut(s) 6, 9
BlpI GCTNAGC 2 cut(s) 636, 936
BlsI GCNGC 2 cut(s) 7, 10
Bme1390I CCNGG 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 2 cut(s) 93, 727
BmiI GGNNCC 2 cut(s) 468, 977
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 1 cut(s) 561
BpiI GAAGAC 3 cut(s) 12, 107, 643
BpmI CTGGAG 1 cut(s) 843
Bpu1102I GCTNAGC 2 cut(s) 636, 936
BsaJI CCNNGG 1 cut(s) 1011
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 697
Bse1I ACTGG 2 cut(s) 453, 826
Bse21I CCTNAGG 1 cut(s) 798
Bse3DI GCAATG 1 cut(s) 642
BseBI CCWGG 1 cut(s) 436
BseDI CCNNGG 1 cut(s) 1011
BseLI CCNNNNNNNGG 2 cut(s) 300, 697
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 6 cut(s) 180, 303, 546, 650, 789, 927
BseNI ACTGG 2 cut(s) 453, 826
BseRI GAGGAG 3 cut(s) 263, 978, 1029
BseXI GCAGC 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 424
BshFI GGCC 4 cut(s) 308, 729, 883, 959
BsiEI CGRYCG 1 cut(s) 424
BsiHKAI GWGCWC 1 cut(s) 942
BslI CCNNNNNNNGG 2 cut(s) 300, 697
BsmAI GTCTC 2 cut(s) 84, 500
BsmBI CGTCTC 1 cut(s) 84
BsnI GGCC 4 cut(s) 308, 729, 883, 959
Bsp1286I GDGCHC 1 cut(s) 942
Bsp143I GATC 2 cut(s) 622, 1006
Bsp1720I GCTNAGC 2 cut(s) 636, 936
BspACI CCGC 2 cut(s) 8, 647
BspANI GGCC 4 cut(s) 308, 729, 883, 959
BspCNI CTCAG 6 cut(s) 179, 304, 547, 649, 790, 928
BspLI GGNNCC 2 cut(s) 468, 977
BspPI GGATC 1 cut(s) 1001
BspQI GCTCTTC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 642
BsrI ACTGG 2 cut(s) 453, 826
BssECI CCNNGG 1 cut(s) 1011
BssMI GATC 2 cut(s) 622, 1006
BssT1I CCWWGG 1 cut(s) 1011
Bst2UI CCWGG 1 cut(s) 436
Bst4CI ACNGT 5 cut(s) 28, 391, 425, 670, 944
Bst6I CTCTTC 3 cut(s) 58, 225, 523
BstAPI GCANNNNNTGC 1 cut(s) 580
BstC8I GCNNGC 3 cut(s) 295, 792, 961
BstDEI CTNAG 6 cut(s) 166, 312, 555, 636, 798, 936
BstKTI GATC 2 cut(s) 625, 1009
BstMAI GTCTC 2 cut(s) 84, 500
BstMBI GATC 2 cut(s) 622, 1006
BstMCI CGRYCG 1 cut(s) 424
BstMWI GCNNNNNNNGC 1 cut(s) 580
BstNI CCWGG 1 cut(s) 436
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 434
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 3 cut(s) 12, 107, 643
BstX2I RGATCY 1 cut(s) 1006
BstYI RGATCY 1 cut(s) 1006
Bsu36I CCTNAGG 1 cut(s) 798
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 4 cut(s) 308, 729, 883, 959
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 4 cut(s) 304, 396, 819, 940
Cac8I GCNNGC 3 cut(s) 295, 792, 961
Cfr13I GGNCC 2 cut(s) 93, 727
Csp6I GTAC 4 cut(s) 203, 401, 446, 835
CviAII CATG 3 cut(s) 206, 589, 731
CviQI GTAC 4 cut(s) 203, 401, 446, 835
DdeI CTNAG 6 cut(s) 166, 312, 555, 636, 798, 936
DpnI GATC 2 cut(s) 624, 1008
DpnII GATC 2 cut(s) 622, 1006
Eam1104I CTCTTC 3 cut(s) 58, 225, 523
EarI CTCTTC 3 cut(s) 58, 225, 523
Eco130I CCWWGG 1 cut(s) 1011
Eco147I AGGCCT 2 cut(s) 308, 959
Eco47I GGWCC 1 cut(s) 93
Eco57I CTGAAG 2 cut(s) 90, 786
Eco81I CCTNAGG 1 cut(s) 798
EcoO109I RGGNCCY 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 434
EcoT14I CCWWGG 1 cut(s) 1011
EcoT22I ATGCAT 1 cut(s) 736
ErhI CCWWGG 1 cut(s) 1011
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 3 cut(s) 209, 592, 734
FatI CATG 3 cut(s) 205, 588, 730
FauNDI CATATG 1 cut(s) 745
Fnu4HI GCNGC 2 cut(s) 6, 9
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 1 cut(s) 327
GluI GCNGC 2 cut(s) 6, 9
GsuI CTGGAG 1 cut(s) 843
HaeIII GGCC 4 cut(s) 308, 729, 883, 959
Hin1II CATG 3 cut(s) 209, 592, 734
HinfI GANTC 5 cut(s) 13, 142, 251, 775, 1022
HphI GGTGA 2 cut(s) 368, 839
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 6 cut(s) 141, 280, 313, 715, 780, 915
Hpy188III TCNNGA 4 cut(s) 186, 797, 861, 876
Hpy8I GTNNAC 1 cut(s) 359
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 5 cut(s) 333, 761, 873, 949, 1049
HpyCH4III ACNGT 5 cut(s) 28, 391, 425, 670, 944
HpyCH4IV ACGT 2 cut(s) 275, 372
HpyCH4V TGCA 8 cut(s) 35, 156, 209, 461, 547, 574, 734, 1088
HpyF10VI GCNNNNNNNGC 1 cut(s) 580
HpyF3I CTNAG 6 cut(s) 166, 312, 555, 636, 798, 936
HpySE526I ACGT 2 cut(s) 275, 372
Hsp92II CATG 3 cut(s) 209, 592, 734
Kzo9I GATC 2 cut(s) 622, 1006
LguI GCTCTTC 1 cut(s) 58
LmnI GCTCC 2 cut(s) 799, 1042
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 561
MaeI CTAG 1 cut(s) 327
MaeII ACGT 2 cut(s) 275, 372
MaeIII GTNAC 1 cut(s) 827
MalI GATC 2 cut(s) 624, 1008
MboI GATC 2 cut(s) 622, 1006
MfeI CAATTG 1 cut(s) 996
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 1 cut(s) 942
MluCI AATT 6 cut(s) 596, 785, 848, 871, 895, 996
MlyI GAGTC 3 cut(s) 7, 260, 1031
Mph1103I ATGCAT 1 cut(s) 736
MroXI GAANNNNTTC 1 cut(s) 899
MseI TTAA 2 cut(s) 396, 683
MslI CAYNNNNRTG 2 cut(s) 423, 501
MspA1I CMGCKG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 436
MunI CAATTG 1 cut(s) 996
MvaI CCWGG 1 cut(s) 436
MwoI GCNNNNNNNGC 1 cut(s) 580
NdeI CATATG 1 cut(s) 745
NdeII GATC 2 cut(s) 622, 1006
NlaIII CATG 3 cut(s) 209, 592, 734
NlaIV GGNNCC 2 cut(s) 468, 977
NmuCI GTSAC 1 cut(s) 827
NsiI ATGCAT 1 cut(s) 736
NspI RCATGY 1 cut(s) 209
OliI CACNNNNGTG 1 cut(s) 423
PceI AGGCCT 2 cut(s) 308, 959
PciSI GCTCTTC 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 899
PfeI GAWTC 2 cut(s) 142, 775
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 3 cut(s) 7, 259, 1030
PpsI GAGTC 3 cut(s) 7, 259, 1030
PpuMI RGGWCCY 1 cut(s) 93
Psp1406I AACGTT 1 cut(s) 372
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 434
PspGI CCWGG 1 cut(s) 434
PspN4I GGNNCC 2 cut(s) 468, 977
PspPI GGNCC 2 cut(s) 93, 727
PspPPI RGGWCCY 1 cut(s) 93
PsuI RGATCY 1 cut(s) 1006
PsyI GACNNNGTC 1 cut(s) 16
RsaI GTAC 4 cut(s) 204, 402, 447, 836
RsaNI GTAC 4 cut(s) 203, 401, 446, 835
RseI CAYNNNNRTG 2 cut(s) 423, 501
SapI GCTCTTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 396, 683
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 2 cut(s) 622, 1006
Sau96I GGNCC 2 cut(s) 93, 727
SchI GAGTC 3 cut(s) 7, 260, 1031
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 1 cut(s) 942
SfaNI GCATC 1 cut(s) 561
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 423, 501
Sse9I AATT 6 cut(s) 596, 785, 848, 871, 895, 996
SseBI AGGCCT 2 cut(s) 308, 959
SsiI CCGC 2 cut(s) 8, 647
SspMI CTAG 1 cut(s) 327
StuI AGGCCT 2 cut(s) 308, 959
StyD4I CCNGG 1 cut(s) 434
StyI CCWWGG 1 cut(s) 1011
TaaI ACNGT 5 cut(s) 28, 391, 425, 670, 944
TaiI ACGT 2 cut(s) 278, 375
TaqI TCGA 3 cut(s) 23, 877, 903
TasI AATT 6 cut(s) 596, 785, 848, 871, 895, 996
TatI WGTACW 2 cut(s) 445, 834
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 142, 775
Tru1I TTAA 2 cut(s) 396, 683
Tru9I TTAA 2 cut(s) 396, 683
TscAI CASTG 4 cut(s) 304, 396, 826, 947
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 5 cut(s) 240, 297, 861, 945, 968
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 4 cut(s) 304, 396, 826, 947
Tth111I GACNNNGTC 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 2 cut(s) 848, 895
XceI RCATGY 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 899
XspI CTAG 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.