MD02G1059000.v1.1

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000145
Physical Location & Seq
Reverse (-)
4736130 .. 4738828
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1059000.v1.1.491

Sequence Viewer

Length: 954 bp
ATGCAGGGCCATTACTGGGGATTGAGGTCAATTTTTCAGGGTCCCGGGGGCTGCTTTCTAAAGGATCTACAAGAATTGACGGGTTGTTCTATCGTTGTTTGTGGACACGATGTTCTGGCTACGGGTTCATTTAATGGTCTAAGGATAGTCAGGATGATTGTGGAAGACTGCTTTGTTTATCGTGTTGCTGCCGAGTACCTTATCAATAGGGTTAAAGAGGCGGGTGTTCATTGTGCCAGGGTGATGAATGGGTTTCAAAACAAGCAGCATGGACCATTGGAGGTCGACGAGAACGGCATCCCCCAAAAGCGCGATAACTCCAAGCCAATTGAAGAGGAGTCGAACAGTTGTGGAGATAACATCTATTACCGTACGAATTTTCCCAAAGACAAAGAAAAGTATGTGCTAGAAGCTTGGCCGAAGGTGAAATCTTTCTTAGAAGAGCATGGTATTTCATGCGAACTCCATCTGGTTGAGAGTTTTATGATAATCTCAAGAGCGAAATGGGATGTGGACCAAGATATTTTTGATAAGGCTAGGGTTGTTCTTGACCTTTTGCCAAGTGATCGGACACCTCAGGCAATAGAATTGTTGAATGCAAGGCAGTATGAGATCATCAAGTTTGGGAATCAAGATTACGGGTTAATCTCAAAATTTGGAATCAATAAGGTGGAACCTGGTGAATGGAAGGAACTTCTCATAGGCCCCGATGATATCTACATAAAGGCACTTAGAGAACTGACAGGTTGTTTTATCGTCGTTAATTGGAAGACCGAAACAGTTGTTGCTACGGGCTCATTCGAAGGATTAAGGCTAGTCAGGATAGTTGTTGAAGACTGCATATATTACAAAGTCCATGCTGGACACCTTATTGACAAGATTAGAACTCGAGGTGCAAGGGCTTATTATGGTACTCTGCGCTTTGTTAAAGTAGCAGAAAGTTTTGGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

36.12

Weight (kDa)

6.27

Isoelectric Point (pI)

25.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 12 - 58 2.5e-07 KRR1 small subunit processome component, second KH domain
KH_KRR1_2nd PF21800 229 - 287 2.9e-09 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 285
AccII CGCG 1 cut(s) 312
AciI CCGC 1 cut(s) 221
AclWI GGATC 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 416
AcsI RAATTY 2 cut(s) 376, 653
AfaI GTAC 3 cut(s) 197, 373, 913
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 4 cut(s) 257, 332, 595, 833
AjnI CCWGG 2 cut(s) 236, 676
AloI GAACNNNNNNTCC 2 cut(s) 96, 128
AluBI AGCT 1 cut(s) 413
AluI AGCT 1 cut(s) 413
AlwI GGATC 1 cut(s) 72
Ama87I CYCGRG 2 cut(s) 44, 888
AoxI GGCC 3 cut(s) 7, 416, 703
ApeKI GCWGC 3 cut(s) 51, 188, 265
ApoI RAATTY 2 cut(s) 376, 653
Asp700I GAANNNNTTC 1 cut(s) 431
AspLEI GCGC 2 cut(s) 312, 921
AspS9I GGNCC 5 cut(s) 7, 41, 272, 514, 704
AsuC2I CCSGG 2 cut(s) 45, 46
AsuHPI GGTGA 3 cut(s) 253, 436, 692
AsuII TTCGAA 1 cut(s) 801
AvaI CYCGRG 2 cut(s) 44, 888
AvaII GGWCC 3 cut(s) 41, 272, 514
AxyI CCTNAGG 1 cut(s) 576
BanII GRGCYC 1 cut(s) 797
BbsI GAAGAC 3 cut(s) 171, 776, 840
BbvI GCAGC 3 cut(s) 38, 175, 277
BccI CCATC 1 cut(s) 474
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 2 cut(s) 238, 678
BcnI CCSGG 2 cut(s) 45, 46
BfaI CTAG 4 cut(s) 407, 537, 815, 952
BisI GCNGC 3 cut(s) 52, 189, 266
BlsI GCNGC 3 cut(s) 53, 190, 267
Bme1390I CCNGG 4 cut(s) 45, 46, 238, 678
Bme18I GGWCC 3 cut(s) 41, 272, 514
BmeT110I CYCGRG 2 cut(s) 44, 888
BmgT120I GGNCC 5 cut(s) 7, 41, 272, 514, 704
BmiI GGNNCC 4 cut(s) 42, 43, 675, 706
BmrFI CCNGG 4 cut(s) 45, 46, 238, 678
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 3 cut(s) 171, 776, 840
Bpu14I TTCGAA 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 478
BpuMI CCSGG 2 cut(s) 45, 46
BsaJI CCNNGG 3 cut(s) 44, 45, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 20
Bse21I CCTNAGG 1 cut(s) 576
BseBI CCWGG 2 cut(s) 238, 678
BseDI CCNNGG 3 cut(s) 44, 45, 237
BseGI GGATG 3 cut(s) 159, 297, 514
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 590
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 3 cut(s) 38, 175, 277
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 3 cut(s) 9, 418, 705
BsiHKCI CYCGRG 2 cut(s) 44, 888
BsiSI CCGG 1 cut(s) 45
BsiWI CGTACG 1 cut(s) 371
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 3 cut(s) 9, 418, 705
BsoBI CYCGRG 2 cut(s) 44, 888
Bsp119I TTCGAA 1 cut(s) 801
Bsp1286I GDGCHC 1 cut(s) 797
Bsp143I GATC 3 cut(s) 64, 565, 612
BspACI CCGC 1 cut(s) 221
BspANI GGCC 3 cut(s) 9, 418, 705
BspCNI CTCAG 1 cut(s) 589
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 4 cut(s) 42, 43, 675, 706
BspPI GGATC 1 cut(s) 72
BspQI GCTCTTC 1 cut(s) 435
BspT104I TTCGAA 1 cut(s) 801
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 44, 45, 237
BssMI GATC 3 cut(s) 64, 565, 612
Bst2UI CCWGG 2 cut(s) 238, 678
Bst4CI ACNGT 3 cut(s) 347, 371, 781
Bst6I CTCTTC 2 cut(s) 327, 435
BstBI TTCGAA 1 cut(s) 801
BstDEI CTNAG 4 cut(s) 140, 436, 576, 731
BstF5I GGATG 3 cut(s) 159, 297, 514
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 2 cut(s) 312, 921
BstKTI GATC 3 cut(s) 67, 568, 615
BstMBI GATC 3 cut(s) 64, 565, 612
BstNI CCWGG 2 cut(s) 238, 678
BstSCI CCNGG 4 cut(s) 43, 44, 236, 676
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 3 cut(s) 38, 175, 277
BstV2I GAAGAC 3 cut(s) 171, 776, 840
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 576
BsuRI GGCC 3 cut(s) 9, 418, 705
BtsCI GGATG 3 cut(s) 159, 297, 514
CfoI GCGC 2 cut(s) 312, 921
Cfr13I GGNCC 5 cut(s) 7, 41, 272, 514, 704
Cfr9I CCCGGG 1 cut(s) 44
CsiI ACCWGGT 1 cut(s) 676
Csp6I GTAC 3 cut(s) 196, 372, 912
CviAII CATG 4 cut(s) 269, 446, 456, 857
CviQI GTAC 3 cut(s) 196, 372, 912
DdeI CTNAG 4 cut(s) 140, 436, 576, 731
DpnI GATC 3 cut(s) 66, 567, 614
DpnII GATC 3 cut(s) 64, 565, 612
EaeI YGGCCR 1 cut(s) 416
Eam1104I CTCTTC 2 cut(s) 327, 435
EarI CTCTTC 2 cut(s) 327, 435
Eco24I GRGCYC 1 cut(s) 797
Eco32I GATATC 1 cut(s) 715
Eco47I GGWCC 3 cut(s) 41, 272, 514
Eco81I CCTNAGG 1 cut(s) 576
Eco88I CYCGRG 2 cut(s) 44, 888
EcoO109I RGGNCCY 2 cut(s) 41, 704
EcoRII CCWGG 2 cut(s) 236, 676
EcoRV GATATC 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 797
FaeI CATG 4 cut(s) 272, 449, 459, 860
FaqI GGGAC 1 cut(s) 27
FatI CATG 4 cut(s) 268, 445, 455, 856
FauI CCCGC 1 cut(s) 214
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 3 cut(s) 52, 189, 266
FokI GGATG 3 cut(s) 166, 284, 521
FriOI GRGCYC 1 cut(s) 797
Fsp4HI GCNGC 3 cut(s) 52, 189, 266
FspBI CTAG 4 cut(s) 407, 537, 815, 952
GlaI GCGC 2 cut(s) 311, 920
GluI GCNGC 3 cut(s) 52, 189, 266
HaeIII GGCC 3 cut(s) 9, 418, 705
HapII CCGG 1 cut(s) 45
HhaI GCGC 2 cut(s) 312, 921
Hin1II CATG 4 cut(s) 272, 449, 459, 860
Hin6I GCGC 2 cut(s) 310, 919
HinP1I GCGC 2 cut(s) 310, 919
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 3 cut(s) 338, 628, 660
HpaII CCGG 1 cut(s) 45
HphI GGTGA 3 cut(s) 253, 436, 692
Hpy166II GTNNAC 3 cut(s) 104, 286, 514
Hpy188I TCNGA 1 cut(s) 570
Hpy188III TCNNGA 5 cut(s) 151, 495, 548, 632, 820
Hpy8I GTNNAC 3 cut(s) 104, 286, 514
Hpy99I CGWCG 2 cut(s) 290, 761
HpyAV CCTTC 3 cut(s) 415, 682, 797
HpyCH4III ACNGT 3 cut(s) 347, 371, 781
HpyCH4V TGCA 4 cut(s) 4, 599, 840, 896
HpyF3I CTNAG 4 cut(s) 140, 436, 576, 731
Hsp92II CATG 4 cut(s) 272, 449, 459, 860
HspAI GCGC 2 cut(s) 310, 919
KflI GGGWCCC 1 cut(s) 41
Kzo9I GATC 3 cut(s) 64, 565, 612
LguI GCTCTTC 1 cut(s) 435
Lsp1109I GCAGC 3 cut(s) 38, 175, 277
LweI GCATC 1 cut(s) 306
MabI ACCWGGT 1 cut(s) 676
MaeI CTAG 4 cut(s) 407, 537, 815, 952
MalI GATC 3 cut(s) 66, 567, 614
MboI GATC 3 cut(s) 64, 565, 612
MboII GAAGA 5 cut(s) 176, 344, 452, 781, 845
MfeI CAATTG 1 cut(s) 327
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 797
MluCI AATT 7 cut(s) 30, 74, 327, 376, 587, 653, 763
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 6 cut(s) 18, 211, 274, 328, 585, 884
MroXI GAANNNNTTC 1 cut(s) 431
MseI TTAA 6 cut(s) 132, 213, 644, 762, 809, 927
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 4 cut(s) 45, 46, 238, 678
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 601
MvaI CCWGG 2 cut(s) 238, 678
MvnI CGCG 1 cut(s) 312
NciI CCSGG 2 cut(s) 45, 46
NdeII GATC 3 cut(s) 64, 565, 612
NlaIII CATG 4 cut(s) 272, 449, 459, 860
NlaIV GGNNCC 4 cut(s) 42, 43, 675, 706
NmeAIII GCCGAG 1 cut(s) 217
NspV TTCGAA 1 cut(s) 801
PaeR7I CTCGAG 1 cut(s) 888
PciSI GCTCTTC 1 cut(s) 435
PctI GAATGC 1 cut(s) 601
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 2 cut(s) 628, 660
Pfl23II CGTACG 1 cut(s) 371
PkrI GCNGC 3 cut(s) 53, 190, 267
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 236, 676
PspGI CCWGG 2 cut(s) 236, 676
PspLI CGTACG 1 cut(s) 371
PspN4I GGNNCC 4 cut(s) 42, 43, 675, 706
PspPI GGNCC 5 cut(s) 7, 41, 272, 514, 704
PspPPI RGGWCCY 1 cut(s) 41
PspXI VCTCGAGB 1 cut(s) 888
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 3 cut(s) 197, 373, 913
RsaNI GTAC 3 cut(s) 196, 372, 912
SalI GTCGAC 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 6 cut(s) 132, 213, 644, 762, 809, 927
SatI GCNGC 3 cut(s) 52, 189, 266
Sau3AI GATC 3 cut(s) 64, 565, 612
Sau96I GGNCC 5 cut(s) 7, 41, 272, 514, 704
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 4 cut(s) 45, 46, 238, 678
SduI GDGCHC 1 cut(s) 797
SexAI ACCWGGT 1 cut(s) 676
SfaNI GCATC 1 cut(s) 306
Sfr274I CTCGAG 1 cut(s) 888
SfuI TTCGAA 1 cut(s) 801
SinI GGWCC 3 cut(s) 41, 272, 514
SlaI CTCGAG 1 cut(s) 888
SmaI CCCGGG 1 cut(s) 46
SmlI CTYRAG 2 cut(s) 493, 888
SmoI CTYRAG 2 cut(s) 493, 888
Sse9I AATT 7 cut(s) 30, 74, 327, 376, 587, 653, 763
SsiI CCGC 1 cut(s) 221
SspMI CTAG 4 cut(s) 407, 537, 815, 952
StyD4I CCNGG 4 cut(s) 43, 44, 236, 676
TaaI ACNGT 3 cut(s) 347, 371, 781
TaqI TCGA 4 cut(s) 285, 341, 801, 889
TaqII GACCGA 1 cut(s) 788
TasI AATT 7 cut(s) 30, 74, 327, 376, 587, 653, 763
TfiI GAWTC 2 cut(s) 628, 660
Tru1I TTAA 6 cut(s) 132, 213, 644, 762, 809, 927
Tru9I TTAA 6 cut(s) 132, 213, 644, 762, 809, 927
TseI GCWGC 3 cut(s) 51, 188, 265
TspDTI ATGAA 4 cut(s) 117, 218, 260, 444
TspMI CCCGGG 1 cut(s) 44
VpaK11BI GGWCC 3 cut(s) 41, 272, 514
XapI RAATTY 2 cut(s) 376, 653
XhoI CTCGAG 1 cut(s) 888
XmaI CCCGGG 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 4 cut(s) 407, 537, 815, 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.