FvH4_1g26390

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000223
Physical Location & Seq
Forward (+)
18256052 .. 18261516
5465 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26390.t1

Sequence Viewer

Length: 3234 bp
ATGTCCACTGTAGGATCCAACAGCCATCCATCCCTAGAGTTCATTTCAAATCCCCAAACAGTCAATGTTGGTATCACAAGGGCGAGTGATAAGTTTTTGAAGTCATTCAAGAAACTGAAGTCAGCCTCTGTGAAGAAGTCCGCACTTAATCTGCTACTGAAGCTCTCAAGTGGGTGGAGGCCTAATAAGCGCAGTGTAGAGACAAGTTGTGGTAGCTCGTCAATAATCTTGAAGAAATTCAAGGTTAAATATCTATATATTGTTTGCACAACAGACATTGCAGAGGATGTGAGATACGTTCAAGTATTAAAGGTCTGGGACATTTTACCACTTGAGGATATCCCAAAGTTGGTATATCGCCTGGAGACTATTTTAAACAGATATACAGATGCTTTTATTAATCTTTGCAAGGAGAAATATTTTGAGGGTAATTTGGAAGTTCCACAGGCTTTGGAATTTTCCCGGTTTAAGGATCCTAGTGTCACTGAAACCAAGGGAGATTTTTTTAGTGACACTTCAGACAGCAGAAGCTATGTTGAGAATTCACAGGTCAGCGAGAGTTTGTTGCTAATGAAATTTTACTCTTTATCATCTGGTGTGGTGAACCATTTGCTTTCTGACCGTGAGGGTAGAGAATTGGATCTTCCATTTGAAGTTACAGACCAGGAAATGGAGATTATAATTCAGCACAGAAGTTCTTTTATAGTTGGACGGTCAGGTACTGGGAAGACCACTGGTCTAACCATGAAATTATTCCAAAAAGAACAGTGGCACCATTTGGCTTTACAGGGCTGTTCTGTTATTGAAAATAGCACTGCTGAGCAAAGTTCTGCAGCTACCGAAGGGAAAGTTATACGCCAGCTTTTTGTTACAGTGAGTCCTAAGCTATGTTTTGCTATCAAGCAACATGTTACACATTTAAAACGTTTTGCATGTGGTGGAAGTCACTCAGCTCAAAGAAGTTTGATTGATATGATCGATTTTGATGAGGAGGAATCACAATTCAAGGACATCCAAGACTCATTTCATGATATTCCTCCAAGTTACTACCCTCTTGTGATAACATTCCATAAGTTCCTGATGATGCTTGATGGAACATTGAGTAACTCATACTTTTCAAGGTTCCAAGATGCATCAATTCCTCATGACCAATTGAGAAATTCGAGATCAGTTGCATTTCAGGCCTTTTTTCGGACAAAAGAAGTCAATTATGAGCAGTTTAGTTCATTATATTGGCCCCATTTTAATACTCAGCTAACCAAGAACCTTGATGCTGCATGTGTCTTTACAGAGATTATTTCTCATATAAAAGGTGGCTTGGGAGCTATTGAAGCATGTGATGGGAAACTCAGCCAGGAGGATTATGTTAAACTCTCAGAGGGCCGATCTTCTGATATAACTAAGCCAAAAAGAGAACAGATATACGAGATATTTCAAGATTATGAGAAAATGAAGATGGGTAATGGTGAATTTGATATGGCTGATTTTGTAATTGATCTTCAACGTCGACTTAAGCATGAAAAGTATGTGGGTGATCAGATGGATTTTATTTATATTGATGAGGTTAAAGATCTCACAATGAGTCAACTTGCTTTGTTCAAACATATGTGCAACACTGTAGACGAGGGATTCGTCTTTTCTGGTGATACAGCACAAACAATTGCCAGGGGTACTGATTTCAGGTTCCAAGATATACGGCATTTGTTCTACAAGAATTTGTGCTGGAGTCAAGAACTGATAAGTATGAGGATAGAAAAGACAAAAGGCCAAATTTCTGAAGTTTATCATTTGACACAAAACATCCATACCCATGCTGGTATATTGAAGTTATCGCAGAGCATTATTGAGTTAATCTATCGCTTTTTTCCTTTTTCAATTGATGTTTTAAAACCAGAAAGCAGTCTGATTTATGGGGAAGCTCCGGTTGTGCTTGAATCTGGAGAAAATGAAAATGCAATCATCAAAAGATTTGGAAATAGTGGAAATATAGTTGGCTTTGGTGCAGACTCATCTCCTTTGAGAAATCAGTGGAGGGTCATTTATGATTACATGAAGGAGCAAGATTTACTTGACTCTACATTACCTAAGAAATTTCCAAGTTTCAATGAAGCCAAACACAACATATTATGCTCTGAACTGAAGCAATTATATGTTGCCGTTACTCGCACCAGACAGAGATTGTGGGTTTGTGAAACTGTACACGAGCATTCGAAACCCATGATTGACTATTGGAAGAAAAAATGTCTAGTGCAAGTTAGGCAACTTGATGATTCACTTGCACAAGCCATGCAAGTTGCTAGCAGCACAGAGGAGTGGAGATCCCGTGAGATTAAGCTATATCATGCGAATAAATATGGAATGGCCACATTGTGCTTTGAAAGAGCTGGTGATACTTATTGGGAACAAAGGTCCAAAGCTGCTGGCCTTAAAGCTATTGCTGACCGTATGCGAATGTCAAATCCTGGGGAAGCTAATTCTATTCTTAAGGAAGCTGCTGAAATATTTGATGCTATAGGCAAAGCTGATTCTGCTGCAAGATGTTTTTCTGATTTGGGGGAGTATGAAAGAGCTGCCAGGATATATTTCGAGAAATGTGGCGACGGTGAATTGGAAAGAGCTGCTGAATGTTTTACACTAGCAGGATGCTATGACGATGCTGCAGAAGTGTATGCTAAAGGCAATTTTTTCTTAGAGTGTCTCTCTGTCTGTTCCAAAGGCAAACTATTTGATAGGGGTTTGCAATATATTGATTATTGGAAAAGGCACGCAGAACAGAACTCTTCTTTAATTAGAGGAGAGGACATACATATGATGGAACACGAATTTCTAGAGAGCTGTGCACTCCACTATCATAGGATGAAAGATAGCAGATCAATGATAAAATTCGTGAAGGCCTTCCGATCTATATTATTGATGCGGAATTTTTTGAAGAGTTTAGGTAGCCTTGATGAACTTATTTTGCTGGAAGATCAATTCGGAAACTATTTGGAAGCTGCAGAGATTGCACAGCTTAAAGGTGACATTCTTCTTCAATCTGATTATCTTGGAAAGGCAGGTGAGTTCAAAGAGGCCTCAATGCATGTCCTATTTTACGTGCTTGCCAGCTCTCTTTGGTCATCTGGCAGCAAGGGCTGGCCCATGAAGAAGTTGGCACAAAATGAGGCTCTTTTGACAAAAGCCAAGTCAGTTGCCAAGAATGAAACAGCTGACTTTTATGAGTTGGTTTGCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

1078

Amino Acids

123.13

Weight (kDa)

6.28

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UvrD-helicase PF00580 449 - 554 3.3e-07 UvrD/REP helicase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 680
AarI CACCTGC 1 cut(s) 3044
Acc36I ACCTGC 1 cut(s) 3044
AccB1I GGYRCC 1 cut(s) 771
AccB7I CCANNNNNTGG 1 cut(s) 670
AccI GTMKAC 2 cut(s) 1507, 1620
AciI CCGC 2 cut(s) 141, 2917
AclI AACGTT 1 cut(s) 925
AclWI GGATC 6 cut(s) 9, 22, 467, 480, 648, 2313
AcoI YGGCCR 1 cut(s) 2361
AcuI CTGAAG 5 cut(s) 137, 179, 501, 1797, 2159
AdeI CACNNNGTG 1 cut(s) 2370
AfaI GTAC 3 cut(s) 721, 1672, 2199
AfiI CCNNNNNNNGG 4 cut(s) 349, 469, 670, 1191
AflII CTTAAG 2 cut(s) 1511, 2483
AflIII ACRYGT 1 cut(s) 907
AhdI GACNNNNNGTC 1 cut(s) 735
AjnI CCWGG 6 cut(s) 360, 663, 1353, 1664, 2461, 2573
AjuI GAANNNNNNNTTGG 2 cut(s) 1008, 1040
Alw21I GWGCWC 1 cut(s) 2842
Alw26I GTCTC 3 cut(s) 194, 359, 2702
Alw44I GTGCAC 1 cut(s) 2838
AlwI GGATC 6 cut(s) 9, 22, 467, 480, 648, 2313
AlwNI CAGNNNCTG 2 cut(s) 128, 722
ApaLI GTGCAC 1 cut(s) 2838
ArsI GACNNNNNNTTYG 4 cut(s) 1613, 1645, 3167, 3199
AseI ATTAAT 1 cut(s) 399
Asp700I GAANNNNTTC 4 cut(s) 104, 236, 752, 2894
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 4 cut(s) 1236, 1381, 2409, 3135
AsuC2I CCSGG 1 cut(s) 463
AsuHPI GGTGA 8 cut(s) 613, 1478, 1544, 1655, 2399, 2615, 3029, 3068
AsuII TTCGAA 1 cut(s) 2210
AsuNHI GCTAGC 1 cut(s) 2297
AvaII GGWCC 1 cut(s) 2409
BaeGI GKGCMC 1 cut(s) 2842
BalI TGGCCA 1 cut(s) 2363
BamHI GGATCC 2 cut(s) 14, 472
BanI GGYRCC 1 cut(s) 771
BarI GAAGNNNNNNTAC 2 cut(s) 1482, 1514
BauI CACGAG 1 cut(s) 2201
BbsI GAAGAC 1 cut(s) 734
Bbv12I GWGCWC 1 cut(s) 2842
BccI CCATC 7 cut(s) 33, 37, 1085, 1334, 1450, 1534, 2806
BceAI ACGGC 2 cut(s) 1712, 2141
BciT130I CCWGG 6 cut(s) 362, 665, 1355, 1666, 2463, 2575
BclI TGATCA 1 cut(s) 1534
BcnI CCSGG 1 cut(s) 463
BcoDI GTCTC 3 cut(s) 194, 359, 2702
BfaI CTAG 7 cut(s) 35, 477, 2246, 2298, 2636, 2828, 3232
BfmI CTRYAG 6 cut(s) 9, 831, 1617, 2511, 2658, 2994
BfrI CTTAAG 2 cut(s) 1511, 2483
BfuAI ACCTGC 1 cut(s) 3044
BglII AGATCT 1 cut(s) 1570
BlpI GCTNAGC 1 cut(s) 819
Bme1390I CCNGG 7 cut(s) 362, 463, 665, 1355, 1666, 2463, 2575
Bme18I GGWCC 1 cut(s) 2409
BmeRI GACNNNNNGTC 1 cut(s) 735
BmgT120I GGNCC 4 cut(s) 1236, 1381, 2409, 3135
BmiI GGNNCC 6 cut(s) 16, 474, 773, 1124, 1238, 1685
BmrFI CCNGG 7 cut(s) 362, 463, 665, 1355, 1666, 2463, 2575
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 9 cut(s) 379, 1074, 1120, 1142, 1261, 2497, 2633, 2644, 2904
BmtI GCTAGC 1 cut(s) 2301
BmuI ACTGGG 1 cut(s) 732
BpiI GAAGAC 1 cut(s) 734
BplI GAGNNNNNCTC 2 cut(s) 2684, 2716
BpmI CTGGAG 3 cut(s) 383, 1744, 1959
Bpu10I CCTNAGC 1 cut(s) 882
Bpu1102I GCTNAGC 1 cut(s) 819
Bpu14I TTCGAA 1 cut(s) 2210
BpuEI CTTGAG 2 cut(s) 151, 353
BpuMI CCSGG 1 cut(s) 463
Bsa29I ATCGAT 1 cut(s) 978
BsaAI YACGTR 1 cut(s) 3094
BsaJI CCNNGG 3 cut(s) 492, 1665, 2462
BsaWI WCCGGW 1 cut(s) 1921
BsaXI ACNNNNNCTCC 2 cut(s) 2308, 2338
Bsc4I CCNNNNNNNGG 4 cut(s) 349, 469, 670, 1191
Bse1I ACTGG 2 cut(s) 727, 739
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 6 cut(s) 362, 665, 1355, 1666, 2463, 2575
BseCI ATCGAT 1 cut(s) 978
BseDI CCNNGG 3 cut(s) 492, 1665, 2462
BseGI GGATG 7 cut(s) 25, 29, 292, 1011, 1800, 2648, 2862
BseLI CCNNNNNNNGG 4 cut(s) 349, 469, 670, 1191
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 5 cut(s) 810, 963, 1265, 1363, 1389
BseNI ACTGG 2 cut(s) 727, 739
BseRI GAGGAG 3 cut(s) 1004, 2324, 2808
BseSI GKGCMC 1 cut(s) 2842
BsgI GTGCAG 1 cut(s) 2022
BshNI GGYRCC 1 cut(s) 771
BshVI ATCGAT 1 cut(s) 978
BsiHKAI GWGCWC 1 cut(s) 2842
BsiSI CCGG 2 cut(s) 463, 1922
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 4 cut(s) 349, 469, 670, 1191
BsmAI GTCTC 3 cut(s) 194, 359, 2702
BsmFI GGGAC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 2206
Bsp119I TTCGAA 1 cut(s) 2210
Bsp1286I GDGCHC 1 cut(s) 2842
Bsp1407I TGTACA 1 cut(s) 2197
Bsp1720I GCTNAGC 1 cut(s) 819
BspACI CCGC 2 cut(s) 141, 2917
BspCNI CTCAG 5 cut(s) 811, 962, 1264, 1362, 1388
BspDI ATCGAT 1 cut(s) 978
BspHI TCATGA 2 cut(s) 1027, 1144
BspLI GGNNCC 6 cut(s) 16, 474, 773, 1124, 1238, 1685
BspMAI CTGCAG 3 cut(s) 835, 2662, 2998
BspMI ACCTGC 1 cut(s) 3044
BspOI GCTAGC 1 cut(s) 2301
BspPI GGATC 6 cut(s) 9, 22, 467, 480, 648, 2313
BspT104I TTCGAA 1 cut(s) 2210
BspT107I GGYRCC 1 cut(s) 771
BspTI CTTAAG 2 cut(s) 1511, 2483
BsrDI GCAATG 1 cut(s) 276
BsrGI TGTACA 1 cut(s) 2197
BsrI ACTGG 2 cut(s) 727, 739
BssECI CCNNGG 3 cut(s) 492, 1665, 2462
BssSI CACGAG 1 cut(s) 2201
BssT1I CCWWGG 1 cut(s) 492
Bst2BI CACGAG 1 cut(s) 2201
Bst2UI CCWGG 6 cut(s) 362, 665, 1355, 1666, 2463, 2575
Bst6I CTCTTC 2 cut(s) 2785, 2924
BstAFI CTTAAG 2 cut(s) 1511, 2483
BstAPI GCANNNNNTGC 1 cut(s) 3002
BstAUI TGTACA 1 cut(s) 2197
BstBAI YACGTR 1 cut(s) 3094
BstBI TTCGAA 1 cut(s) 2210
BstC8I GCNNGC 7 cut(s) 860, 2299, 2422, 2766, 3099, 3103, 3134
BstDEI CTNAG 9 cut(s) 819, 882, 949, 1251, 1349, 1375, 1401, 2085, 2689
BstF5I GGATG 7 cut(s) 25, 29, 292, 1011, 1800, 2648, 2862
BstHHI GCGC 1 cut(s) 192
BstMAI GTCTC 3 cut(s) 194, 359, 2702
BstMWI GCNNNNNNNGC 8 cut(s) 160, 187, 1181, 1331, 2257, 2528, 3002, 3129
BstNI CCWGG 6 cut(s) 362, 665, 1355, 1666, 2463, 2575
BstNSI RCATGY 5 cut(s) 911, 936, 1281, 1338, 3083
BstSCI CCNGG 7 cut(s) 360, 461, 663, 1353, 1664, 2461, 2573
BstSFI CTRYAG 6 cut(s) 9, 831, 1617, 2511, 2658, 2994
BstSLI GKGCMC 1 cut(s) 2842
BstV2I GAAGAC 1 cut(s) 734
BstX2I RGATCY 5 cut(s) 14, 472, 640, 1570, 2318
BstYI RGATCY 5 cut(s) 14, 472, 640, 1570, 2318
Bsu15I ATCGAT 1 cut(s) 978
BsuTUI ATCGAT 1 cut(s) 978
BtsCI GGATG 7 cut(s) 25, 29, 292, 1011, 1800, 2648, 2862
BtsI GCAGTG 2 cut(s) 199, 813
BtsIMutI CAGTG 9 cut(s) 6, 199, 483, 732, 773, 813, 879, 1614, 2033
BveI ACCTGC 1 cut(s) 3044
Cac8I GCNNGC 7 cut(s) 860, 2299, 2422, 2766, 3099, 3103, 3134
CaiI CAGNNNCTG 2 cut(s) 128, 722
CciI TCATGA 2 cut(s) 1027, 1144
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 4 cut(s) 1236, 1381, 2409, 3135
ClaI ATCGAT 1 cut(s) 978
Csp6I GTAC 3 cut(s) 720, 1671, 2198
CspCI CAANNNNNGTGG 2 cut(s) 432, 467
CviQI GTAC 3 cut(s) 720, 1671, 2198
DdeI CTNAG 9 cut(s) 819, 882, 949, 1251, 1349, 1375, 1401, 2085, 2689
DraI TTTAAA 3 cut(s) 375, 921, 1887
DraIII CACNNNGTG 1 cut(s) 2370
DriI GACNNNNNGTC 1 cut(s) 735
EaeI YGGCCR 1 cut(s) 2361
Eam1104I CTCTTC 2 cut(s) 2785, 2924
Eam1105I GACNNNNNGTC 1 cut(s) 735
EarI CTCTTC 2 cut(s) 2785, 2924
Eco130I CCWWGG 1 cut(s) 492
Eco147I AGGCCT 4 cut(s) 181, 1184, 2894, 3071
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 2409
Eco57I CTGAAG 5 cut(s) 137, 179, 501, 1797, 2159
EcoRI GAATTC 1 cut(s) 541
EcoRII CCWGG 6 cut(s) 360, 663, 1353, 1664, 2461, 2573
EcoRV GATATC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 492
EcoT22I ATGCAT 2 cut(s) 1135, 3081
ErhI CCWWGG 1 cut(s) 492
FalI AAGNNNNNCTT 2 cut(s) 2052, 2084
FaqI GGGAC 1 cut(s) 332
FauNDI CATATG 2 cut(s) 1605, 2808
FbaI TGATCA 1 cut(s) 1534
FblI GTMKAC 2 cut(s) 1507, 1620
FokI GGATG 7 cut(s) 12, 16, 299, 998, 1787, 2655, 2869
FspBI CTAG 7 cut(s) 35, 477, 2246, 2298, 2636, 2828, 3232
GlaI GCGC 1 cut(s) 191
GsuI CTGGAG 3 cut(s) 383, 1744, 1959
HapII CCGG 2 cut(s) 463, 1922
HhaI GCGC 1 cut(s) 192
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 2 cut(s) 1508, 1586
HindII GTYRAC 2 cut(s) 1508, 1586
HpaII CCGG 2 cut(s) 463, 1922
HphI GGTGA 8 cut(s) 613, 1478, 1544, 1655, 2399, 2615, 3029, 3068
Hpy166II GTNNAC 7 cut(s) 6, 604, 1508, 1586, 1621, 2200, 2840
Hpy8I GTNNAC 7 cut(s) 6, 604, 1508, 1586, 1621, 2200, 2840
Hpy99I CGWCG 2 cut(s) 1509, 2603
HpyAV CCTTC 4 cut(s) 836, 2047, 2884, 2905
HpyCH4IV ACGT 4 cut(s) 297, 925, 1504, 3093
HpyF10VI GCNNNNNNNGC 8 cut(s) 160, 187, 1181, 1331, 2257, 2528, 3002, 3129
HpyF3I CTNAG 9 cut(s) 819, 882, 949, 1251, 1349, 1375, 1401, 2085, 2689
HpySE526I ACGT 4 cut(s) 297, 925, 1504, 3093
HspAI GCGC 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 1534
LmnI GCTCC 3 cut(s) 1322, 1924, 2056
LweI GCATC 9 cut(s) 379, 1074, 1120, 1142, 1261, 2497, 2633, 2644, 2904
MaeI CTAG 7 cut(s) 35, 477, 2246, 2298, 2636, 2828, 3232
MaeII ACGT 4 cut(s) 297, 925, 1504, 3093
MfeI CAATTG 3 cut(s) 1151, 1659, 1875
MflI RGATCY 5 cut(s) 14, 472, 640, 1570, 2318
MhlI GDGCHC 1 cut(s) 2842
MlsI TGGCCA 1 cut(s) 2363
MluNI TGGCCA 1 cut(s) 2363
MlyI GAGTC 6 cut(s) 886, 1013, 1591, 1735, 2000, 2066
MmeI TCCRAC 2 cut(s) 42, 688
Mox20I TGGCCA 1 cut(s) 2363
Mph1103I ATGCAT 2 cut(s) 1135, 3081
MroXI GAANNNNTTC 4 cut(s) 104, 236, 752, 2894
MscI TGGCCA 1 cut(s) 2363
MslI CAYNNNNRTG 2 cut(s) 1809, 2807
Msp20I TGGCCA 1 cut(s) 2363
MspA1I CMGCKG 1 cut(s) 3206
MspCI CTTAAG 2 cut(s) 1511, 2483
MspI CCGG 2 cut(s) 463, 1922
MspR9I CCNGG 7 cut(s) 362, 463, 665, 1355, 1666, 2463, 2575
MunI CAATTG 3 cut(s) 1151, 1659, 1875
Mva1269I GAATGC 1 cut(s) 2206
MvaI CCWGG 6 cut(s) 362, 665, 1355, 1666, 2463, 2575
MwoI GCNNNNNNNGC 8 cut(s) 160, 187, 1181, 1331, 2257, 2528, 3002, 3129
NciI CCSGG 1 cut(s) 463
NdeI CATATG 2 cut(s) 1605, 2808
NheI GCTAGC 1 cut(s) 2297
NlaIV GGNNCC 6 cut(s) 16, 474, 773, 1124, 1238, 1685
NmuCI GTSAC 4 cut(s) 481, 509, 944, 3017
NsiI ATGCAT 2 cut(s) 1135, 3081
NspI RCATGY 5 cut(s) 911, 936, 1281, 1338, 3083
NspV TTCGAA 1 cut(s) 2210
PagI TCATGA 2 cut(s) 1027, 1144
PaqCI CACCTGC 1 cut(s) 3044
PceI AGGCCT 4 cut(s) 181, 1184, 2894, 3071
PciI ACATGT 1 cut(s) 907
PcsI WCGNNNNNNNCGW 1 cut(s) 1629
PctI GAATGC 1 cut(s) 2206
PdmI GAANNNNTTC 4 cut(s) 104, 236, 752, 2894
PfeI GAWTC 5 cut(s) 995, 1629, 1934, 2270, 2525
PflMI CCANNNNNTGG 1 cut(s) 670
PleI GAGTC 6 cut(s) 885, 1013, 1590, 1734, 2000, 2066
PpsI GAGTC 6 cut(s) 885, 1013, 1590, 1734, 2000, 2066
Ppu21I YACGTR 1 cut(s) 3094
PscI ACATGT 1 cut(s) 907
PshBI ATTAAT 1 cut(s) 399
PsiI TTATAA 1 cut(s) 680
Psp1406I AACGTT 1 cut(s) 925
Psp6I CCWGG 6 cut(s) 360, 663, 1353, 1664, 2461, 2573
PspGI CCWGG 6 cut(s) 360, 663, 1353, 1664, 2461, 2573
PspN4I GGNNCC 6 cut(s) 16, 474, 773, 1124, 1238, 1685
PspPI GGNCC 4 cut(s) 1236, 1381, 2409, 3135
PstI CTGCAG 3 cut(s) 835, 2662, 2998
PstNI CAGNNNCTG 2 cut(s) 128, 722
PsuI RGATCY 5 cut(s) 14, 472, 640, 1570, 2318
PvuII CAGCTG 1 cut(s) 3206
RsaI GTAC 3 cut(s) 721, 1672, 2199
RsaNI GTAC 3 cut(s) 720, 1671, 2198
RseI CAYNNNNRTG 2 cut(s) 1809, 2807
SalI GTCGAC 1 cut(s) 1506
Sau96I GGNCC 4 cut(s) 1236, 1381, 2409, 3135
SchI GAGTC 6 cut(s) 886, 1013, 1591, 1735, 2000, 2066
ScrFI CCNGG 7 cut(s) 362, 463, 665, 1355, 1666, 2463, 2575
SduI GDGCHC 1 cut(s) 2842
SfaNI GCATC 9 cut(s) 379, 1074, 1120, 1142, 1261, 2497, 2633, 2644, 2904
SfcI CTRYAG 6 cut(s) 9, 831, 1617, 2511, 2658, 2994
SfuI TTCGAA 1 cut(s) 2210
SinI GGWCC 1 cut(s) 2409
SmiMI CAYNNNNRTG 2 cut(s) 1809, 2807
SmlI CTYRAG 4 cut(s) 166, 332, 1511, 2483
SmoI CTYRAG 4 cut(s) 166, 332, 1511, 2483
SseBI AGGCCT 4 cut(s) 181, 1184, 2894, 3071
SsiI CCGC 2 cut(s) 141, 2917
SspI AATATT 2 cut(s) 419, 2502
SspMI CTAG 7 cut(s) 35, 477, 2246, 2298, 2636, 2828, 3232
StuI AGGCCT 4 cut(s) 181, 1184, 2894, 3071
StyD4I CCNGG 7 cut(s) 360, 461, 663, 1353, 1664, 2461, 2573
StyI CCWWGG 1 cut(s) 492
TaiI ACGT 4 cut(s) 300, 928, 1507, 3096
TaqI TCGA 5 cut(s) 978, 1163, 1507, 2210, 2586
TatI WGTACW 1 cut(s) 2197
TfiI GAWTC 5 cut(s) 995, 1629, 1934, 2270, 2525
TscAI CASTG 9 cut(s) 13, 199, 490, 739, 773, 820, 879, 1621, 2033
TseFI GTSAC 4 cut(s) 481, 509, 944, 3017
Tsp45I GTSAC 4 cut(s) 481, 509, 944, 3017
TspRI CASTG 9 cut(s) 13, 199, 490, 739, 773, 820, 879, 1621, 2033
Van91I CCANNNNNTGG 1 cut(s) 670
Vha464I CTTAAG 2 cut(s) 1511, 2483
VneI GTGCAC 1 cut(s) 2838
VpaK11BI GGWCC 1 cut(s) 2409
VspI ATTAAT 1 cut(s) 399
XbaI TCTAGA 1 cut(s) 2827
XceI RCATGY 5 cut(s) 911, 936, 1281, 1338, 3083
XcmI CCANNNNNNNNNTGG 2 cut(s) 1811, 3145
XmiI GTMKAC 2 cut(s) 1507, 1620
XmnI GAANNNNTTC 4 cut(s) 104, 236, 752, 2894
XspI CTAG 7 cut(s) 35, 477, 2246, 2298, 2636, 2828, 3232
Zsp2I ATGCAT 2 cut(s) 1135, 3081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.