Rh3AG273600

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000223
Physical Location & Seq
Forward (+)
31350558 .. 31358700
8143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG273600.1

Sequence Viewer

Length: 666 bp
ATGGTGGGTTTAACTGAGACTCTGTTTTCTTGGTCCCTTGAAGACATTTTCAATGAAGATCTTTACAAGAACAAGGTGGAAAAGATTCCTGAATCATTTCAGTCGGTTGACCAGTACTTTGGGTCTTATCTGTATCCTTTATTGGAAGAAACTCGAGCTCAGTTACATTCCAGTATGGAAACTATTGACAGTGCTCCATTTGCGGAAGTAGTTGATTTTAAAGAGTCCAAGCCATATGGAACAAAGCAATATACAGTCAAGGTTGATTGTTGGCGAAACAGGTTCAGTGAACGTGGCAATGATCCATACAAAACTTTGCCTGGGGATCTTTTTATTTTAGCAAATGCTAAACCTGAAACTGTTTCTGAATTACAACTGGCTGGCAGGTCATGGTCTTTTGTATCTGTAACTCATCTTGTGTCTAACATCTCACAAATTCAGAAAAAAGATGAGAATGGGGATGAGGAAACTTCTCTTTGTTTTAAAATCGAGTCTTCAAAAGAGTTTGAAGTCGATGATAGCACATCACTGTTTATTGTTTTCTTGTTGAATTTAATCCCCAGTCGAAGAATATACAAAGCATTGTACATGCAGGGAAATTTGACAATTATCAAAGAAGTTCTATGCTCTGATTCTGTGGTAAGACCTCAAGGATTAATAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

221

Amino Acids

25.33

Weight (kDa)

4.77

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 66 - 201 4.5e-52 Domain of unknown function (DUF6469)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
AciI CCGC 1 cut(s) 203
AclWI GGATC 2 cut(s) 296, 333
AcsI RAATTY 3 cut(s) 435, 550, 598
AfaI GTAC 2 cut(s) 116, 587
AgsI TTSAA 5 cut(s) 41, 52, 498, 509, 550
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw21I GWGCWC 2 cut(s) 160, 196
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 296, 333
Ama87I CYCGRG 1 cut(s) 153
ApoI RAATTY 3 cut(s) 435, 550, 598
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AseI ATTAAT 1 cut(s) 656
Asp700I GAANNNNTTC 2 cut(s) 84, 96
AspS9I GGNCC 1 cut(s) 33
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 2 cut(s) 48, 486
Bbv12I GWGCWC 2 cut(s) 160, 196
BciT130I CCWGG 1 cut(s) 321
BciVI GTATCC 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 375
BfuI GTATCC 1 cut(s) 144
BglII AGATCT 1 cut(s) 58
BmcAI AGTACT 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 321
BmrI ACTGGG 1 cut(s) 555
BmuI ACTGGG 1 cut(s) 555
BpiI GAAGAC 2 cut(s) 48, 486
BpuEI CTTGAG 1 cut(s) 633
BsaJI CCNNGG 1 cut(s) 320
Bse1I ACTGG 4 cut(s) 112, 171, 381, 561
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 1 cut(s) 466
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 2 cut(s) 6, 173
BseNI ACTGG 4 cut(s) 112, 171, 381, 561
BsiHKAI GWGCWC 2 cut(s) 160, 196
BsiHKCI CYCGRG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 160, 196
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 3 cut(s) 58, 301, 325
BspACI CCGC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 7, 172
BspLI GGNNCC 1 cut(s) 35
BspMI ACCTGC 1 cut(s) 375
BspPI GGATC 2 cut(s) 296, 333
BsrDI GCAATG 1 cut(s) 304
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 4 cut(s) 112, 171, 381, 561
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 3 cut(s) 58, 301, 325
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 4 cut(s) 191, 256, 361, 531
BstAUI TGTACA 1 cut(s) 585
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 2 cut(s) 15, 159
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 3 cut(s) 61, 304, 328
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 58, 301, 325
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 592
BstSCI CCNGG 1 cut(s) 319
BstV2I GAAGAC 2 cut(s) 48, 486
BstX2I RGATCY 2 cut(s) 58, 325
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 2 cut(s) 58, 325
BsuI GTATCC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 3 cut(s) 196, 292, 527
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 115, 586
CviAII CATG 2 cut(s) 390, 589
CviJI RGCY 3 cut(s) 158, 232, 380
CviKI_1 RGCY 3 cut(s) 158, 232, 380
CviQI GTAC 2 cut(s) 115, 586
DdeI CTNAG 2 cut(s) 15, 159
DpnI GATC 3 cut(s) 60, 303, 327
DpnII GATC 3 cut(s) 58, 301, 325
DraI TTTAAA 2 cut(s) 220, 484
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 2 cut(s) 393, 592
FaiI YATR 9 cut(s) 176, 235, 237, 252, 307, 391, 574, 590, 625
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 389, 588
FauNDI CATATG 1 cut(s) 235
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 1 cut(s) 160
Hin1II CATG 2 cut(s) 393, 592
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 6 cut(s) 19, 85, 92, 224, 491, 632
Hpy166II GTNNAC 2 cut(s) 109, 290
Hpy188I TCNGA 3 cut(s) 367, 441, 631
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 2 cut(s) 109, 290
HpyCH4III ACNGT 4 cut(s) 191, 256, 361, 531
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 592
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 15, 159
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 2 cut(s) 393, 592
Kzo9I GATC 3 cut(s) 58, 301, 325
LmnI GCTCC 1 cut(s) 199
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 162, 406
MalI GATC 3 cut(s) 60, 303, 327
MboI GATC 3 cut(s) 58, 301, 325
MboII GAAGA 5 cut(s) 53, 68, 158, 486, 579
MflI RGATCY 2 cut(s) 58, 325
MhlI GDGCHC 2 cut(s) 160, 196
MluCI AATT 5 cut(s) 368, 435, 550, 598, 606
MlyI GAGTC 3 cut(s) 13, 233, 500
MnlI CCTC 2 cut(s) 457, 657
MroXI GAANNNNTTC 2 cut(s) 84, 96
MseI TTAA 5 cut(s) 11, 219, 483, 554, 656
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeI CATATG 1 cut(s) 235
NdeII GATC 3 cut(s) 58, 301, 325
NlaIII CATG 2 cut(s) 393, 592
NlaIV GGNNCC 1 cut(s) 35
NspI RCATGY 1 cut(s) 592
PaeR7I CTCGAG 1 cut(s) 153
PdmI GAANNNNTTC 2 cut(s) 84, 96
PfeI GAWTC 3 cut(s) 85, 92, 632
PleI GAGTC 3 cut(s) 13, 232, 499
PpsI GAGTC 3 cut(s) 13, 232, 499
PshBI ATTAAT 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 33
PspXI VCTCGAGB 1 cut(s) 153
PsuI RGATCY 2 cut(s) 58, 325
RsaI GTAC 2 cut(s) 116, 587
RsaNI GTAC 2 cut(s) 115, 586
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 5 cut(s) 11, 219, 483, 554, 656
Sau3AI GATC 3 cut(s) 58, 301, 325
Sau96I GGNCC 1 cut(s) 33
ScaI AGTACT 1 cut(s) 116
SchI GAGTC 3 cut(s) 13, 233, 500
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 2 cut(s) 160, 196
SetI ASST 8 cut(s) 78, 160, 264, 284, 295, 355, 389, 649
Sfr274I CTCGAG 1 cut(s) 153
SinI GGWCC 1 cut(s) 33
SlaI CTCGAG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 153, 648
SmoI CTYRAG 2 cut(s) 153, 648
Sse9I AATT 5 cut(s) 368, 435, 550, 598, 606
SsiI CCGC 1 cut(s) 203
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 319
TaaI ACNGT 4 cut(s) 191, 256, 361, 531
TaiI ACGT 1 cut(s) 295
TaqI TCGA 4 cut(s) 154, 489, 513, 565
TasI AATT 5 cut(s) 368, 435, 550, 598, 606
TatI WGTACW 2 cut(s) 114, 585
TfiI GAWTC 3 cut(s) 85, 92, 632
Tru1I TTAA 5 cut(s) 11, 219, 483, 554, 656
Tru9I TTAA 5 cut(s) 11, 219, 483, 554, 656
TscAI CASTG 3 cut(s) 196, 292, 534
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 3 cut(s) 196, 292, 534
VpaK11BI GGWCC 1 cut(s) 33
VspI ATTAAT 1 cut(s) 656
XapI RAATTY 3 cut(s) 435, 550, 598
XceI RCATGY 1 cut(s) 592
XhoI CTCGAG 1 cut(s) 153
XmnI GAANNNNTTC 2 cut(s) 84, 96
ZrmI AGTACT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.