Rmu_sc0003001.1_g000002

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003001.1
OG0000223
Physical Location & Seq
Forward (+)
11281 .. 19353
8073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003001.1_g000002.1.cds

Sequence Viewer

Length: 5814 bp
atggaatccatgcacagcgcgccattttgtcaagtaaatgccatccaagagtcaaagccctatgaaggagaaacaaagctatatgatatggagattgatggctggagaaacagtgattctggcatggagttgcacaaacccattcagggagatgtttttgttttagcagatgctaaactcgaaactatatctgatttacgaaagttggggaaatggtggtcacttgtaatagtcactgaggtctccacagataagaaagaggatgatagaacctctctttcccttaaagtcagagcaccgaaagaatttgaagtcaacaatggcaatggaacatcactgtttttggtcttcttagcaaacataactcctaacttaaggatatggaacgcaatgcacatgtgcatcagttccagatggaaggtgctgtttggtgataactttatgaaatcattcaaaaacttgaagtcattccaaaagaagatgtcagtgctgaatcttcttctcaagctttcgagtggctggagacccaagaaacgaaatgtagacacaatatgtgaaagctcttcgatgacactgaagcaatttaaggttgatgatctatatattgttttgacaattgacattgaaaaggatttgaaatacatgcaagtgttgaggatgtgggacttattgcctggtctgttggatatccaaaaattggcagatcgattggactgcatatttagtagatacacgaatctttttgtcaatctctgtagagagaaatgtcttgagggtcatttggaaattccagcaagctggcccctctctttggatgttgtccgctataaagatctaagcagcaccgaaagcatgagtaattctgttggtgattcttctgcgaatggaagttgtgttgagaattcaaaggtcaatgagagcttgttgctgatgaagttttactccttatcatctggggtagtgaacttcttgttatctgacagagaggacagcaaagtggatctcccttttgaagttactgaccaagaaagggaggctgttctttatgatagaagtatatttatactaggacggtcaggcactggaaagacaacagttttgactaaaaagttttatcagaaagaacagcagcaccatatggttgatgaaggtttctatgatgttgaaagcaatgcagttggacatgctggtctgcataataaagctggacagagttcttcttctgcattaaataaagggactgtgttacgccagctttttgtgactgtgagtcctaaactctgttttgccgtcaaacaacattttttacgcttgaaaagttttgcttccggcagaagcggtttggttgatatggatgattttgatgatggggaagctcaatttaggggtatcccagattctttttgtgatattcctccaaaatgttatcctcttttcgtaacatttcataagttcttgatgatgcttgatggaagtctgagtaattcatactttgaaagattcccagacatcacaaaaccacctcaaggtcgacagggaatatcaagagctaatgtgctgcagaccttcctcaccaccaaggaggtcacatatgcaaggtttagctcatcatattggcctcattttgatgttcagttgacaaagaagcttgatgcttcacgagtctttactgagattatttctcatatcaaaggtggtcttagagccttggaagcaggtgatggaaaactcactcagttggattatgtgcaaatgtcagagggccgggcttccagtttaagccagcaaaagagagagataatatatgatatatttcaggtatatgagaaaatgaaaatgagaaatggtgagtttgatattgctgattttgtaaatgatattcaccgtcggctcaaatgtgaaaaatacaagggtgatgaaattgattttgtgtacattgatgaggtccaggatcttgccatgagccaaattgcattgtttaaacatatctgcagcaatgttgaagagggtttcgttttttctggagatacagcccagacaatagcaaggggtattgattttagattccaagatatacgacatctgttttacaagaagtttgtattggaatcaagaaacaaaaaacatgacaataggaaagaaaaaggacagatctcaaacatctttcagttgacacaaaacttccgaagccatgatgggatactgaagttgttgcagagcattgttgaactgatttatcattttttccccctctgtattgatgtcttagaaccagaaacaagtatgatatatggggaagctccgattctactatattctggaaatgatgaaaaactattcaaaaaaattctaggaagtagtgggattattgctggaaatatgggtggctttggtgcggatcaagttattttggtccgtgatgattgttctcgagaagaaatctctaactccattgggaagcaagctctagttcttactatagtggagtgcaagggcctagaatttgaggatgtactcctatacaaattttttggatcatcaccactgaaaaatcaatggagggtgctatatgaattcatgcaagaacaaaatttgctggactccacattacctgagcgctttccaagttttgatgatgccaaacacagcatgttatgctctgaactaaagcagttatatgtggctgtctctcgtacaagacagagactctggatatacgagaatgttgaagaactttccaacccaatttttgactattggaaaaggcaacatcttgtacaacttagagaactagacgattcacttgcacaaattatgcaagttgcaagcacttcaggagactggagatcacgtggcatcaagctatatcatgagcataactacaaaatggccagaatgtgctttcataaagctggtgatacattttgggaaagacggtctgaagctgctgagcttaaagtcaaggcagaccatatgcgcatttctagtcctggagaggcaaatgcactccttaggaaagcagcttcaatttttgaagctataggcctgtttgtaccttctgccagatgcttttatgatttgggcgagtatgaacgagcaggtacaatttatttgtataaatgtggcgaactggaactggaaaatgctggggagtgcttttatcttgctgaaaattatgtgcttgctgcagatgtgtatgctagaggaaactttttctttcagagtatttcttcttgtttacgaggaaatatatttcacagaggtttggaatacataaaatattggagacaacatgcaagagacgagtatgatctggccagacaagcagatgagactcatgaaatggaattggaatttcttgagcattgcgcatttcactattatgagggaaaagatgacagatcaaggatgaaagttcttagagatgggatgctttctactcgaaagtttttgaatgctcagatttcatcaagcacttcaaaatatttgtgggaagaaaaactgcctggtgatcttaaaaggccttcaaacaaaaaatatgagaagcaggtttctattgattcactggtctacttctggaattcttggaaggatacagttgtacacctgtttgaatatcttggatcgatagatgttaatgattacataagtcatggtgacttctttctgaattatttaggggtgtggaggcattttcatgatggtctaaatccgctctatctttcactcatttatgatattgactgggtgagaagtattgacaagagatctttcccaagaaatgaggagtcggtccccattgatgttcaccggcttgtcgtggatgctcagagttattggagttcagagatgctttctcttggcattaaggttttggagaagcttgaagtgctttacaacttcgcaatcaataattctgattcagtgttctgccagagccggtctcttatccttatatatgaggttgcaatatatcttctggaatccaaatttctgaagatgactcattatcatgctgagacactccacagatttgttacattgtcgactgagaattttgtctcttacatatttcctttagattggatgaggtcatcaagagaggatatgatttctcttaggcaaattgattcttgtaagtgtttactgaatcaagtcatagttgagtacatcagctcgacaaacaggctttcatctgggcaaatgggatgcattgcaatgatcattcttgggtctggtaagctggataatgaactttatgagaagcttataaaaaatctagactgcaactctccatggaaaaagttcattgaggatctatgtgacagtattcagtcagagctgccagaaggttataatagtgagcgacctaaaaatgccacagttattgaatattcggtggcacctgagagaggtcctttacttggaaatatcagtcaagaaccgagagaggcgtctcttttgtggaagttccatggtgctttgttcaaaacttatagtcagaattggagtttacattgctacaatataacacctgattgcttcttatatcttgtagactgccttctgattcggatctgttgctttcaaggttatgcaatcactacaagatcttgtttccttgagcggctgatatataaggaggaacataatcaagtgataatggatgatgttcgaatatcttttgaatgcatccttcagtttctgactgatgttgttcgggaatttctttttaataagacggatatgattaagtggataaaaaagtgtaccaataatagttggaagatgtattactcgctactgatgcagggactggtttttgtgttatgtctgctttatttgaattttgggatgggctgtgatattctcttggatttgctgaggaggaagtacatcactgaccagttaccaaaggagttctgctatgtccttaggggaattgcatctttacgtgattctgttagtagacatgttgatgtgctagctcgagcttttaagaagagcggtaatcctttggtggttgcaagttttgggattgattgttcaaggttcttctgttcagatgccattatcatcaacatgaaggctaacatatgcatggctgaaatagtaagatctctgtttccaaaacactctatggttcgttcttcacaagggcaaacatacaccactgaaaaccttaggcattggaacagaaaaaacttccccgtggattttgatccgttgtgggaaatatttaaaggttttaaaccagcaaaggaaagagatcagtgcaatatattttcagatgcctcaacaatcaagttggatgtggagaagattattcggcttttggctgctgcatggtctggccttgatgacaaagaagaacgaaagttatctagagaagtgctgagcatgctggatgaattggtgcaactctatgccgcattagatgggagcgaacgtgaagttggaaacaatatggctacagttgcagaactttccaggaggttgcagtggagaagtcaaagatttttttggccggaaaaaattcagcccatcttcactgaactgtatatggagcacaatacgaaactagctaggaaggctcatgtacatgaggctgttgctaagtctggccacgacaatgaggcaggaaacggtgatcgactcgcagctgaaactcaaactgacagctacgggactggaaacacgaagaaggcgatgcgattgatgatgcatgccacagaactctctcattctctattctctattctaaagcgcaaacctccctacactgttcattttcgtttgtcgttttccttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

1937

Amino Acids

223.86

Weight (kDa)

6.49

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 4271, 4356
AarI CACCTGC 1 cut(s) 1706
AasI GACNNNNNNGTC 1 cut(s) 1188
Acc16I TGCGCA 2 cut(s) 2978, 3370
Acc36I ACCTGC 3 cut(s) 1706, 3089, 3538
AccB1I GGYRCC 1 cut(s) 4402
AccB7I CCANNNNNTGG 1 cut(s) 697
AccBSI CCGCTC 3 cut(s) 3715, 4627, 5007
AccI GTMKAC 6 cut(s) 543, 1531, 3570, 4046, 4557, 4969
AccII CGCG 1 cut(s) 20
AciI CCGC 7 cut(s) 823, 1338, 2396, 3713, 4627, 5007, 5430
AclWI GGATC 8 cut(s) 1008, 1959, 2406, 2542, 3631, 4323, 4583, 5216
AcoI YGGCCR 4 cut(s) 2889, 3315, 5525, 5623
AcuI CTGAAG 6 cut(s) 596, 2225, 2817, 2961, 4016, 4682
AcvI CACGTG 1 cut(s) 2852
AcyI GRCGYC 1 cut(s) 4454
AfeI AGCGCT 1 cut(s) 2618
AfiI CCNNNNNNNGG 8 cut(s) 65, 146, 697, 811, 1030, 1526, 4412, 4424
AflII CTTAAG 1 cut(s) 373
AflIII ACRYGT 2 cut(s) 396, 4972
AhdI GACNNNNNGTC 1 cut(s) 1269
AjnI CCWGG 5 cut(s) 673, 1947, 2989, 3505, 5489
AjuI GAANNNNNNNTTGG 4 cut(s) 2087, 2119, 5439, 5471
AloI GAACNNNNNNTCC 2 cut(s) 5029, 5061
Alw21I GWGCWC 2 cut(s) 298, 5571
AlwI GGATC 8 cut(s) 1008, 1959, 2406, 2542, 3631, 4323, 4583, 5216
AlwNI CAGNNNCTG 3 cut(s) 1082, 4705, 4816
Ama87I CYCGRG 2 cut(s) 2430, 4989
Aor51HI AGCGCT 1 cut(s) 2618
ArsI GACNNNNNNTTYG 2 cut(s) 1081, 1113
Asp700I GAANNNNTTC 4 cut(s) 449, 467, 4304, 5535
AspLEI GCGC 6 cut(s) 20, 22, 2619, 2979, 3371, 5769
AspS9I GGNCC 7 cut(s) 801, 1762, 1945, 2413, 2494, 3793, 4415
AsuC2I CCSGG 1 cut(s) 1766
AsuII TTCGAA 1 cut(s) 4675
AsuNHI GCTAGC 1 cut(s) 4984
AvaI CYCGRG 2 cut(s) 2430, 4989
AvaII GGWCC 4 cut(s) 1945, 2413, 3793, 4415
AxyI CCTNAGG 3 cut(s) 3011, 4934, 5183
BaeI ACNNNNGTAYC 4 cut(s) 2192, 2225, 3585, 3618
BalI TGGCCA 3 cut(s) 2891, 3317, 5625
BanI GGYRCC 1 cut(s) 4402
BarI GAAGNNNNNNTAC 4 cut(s) 4548, 4580, 4778, 4810
BauI CACGAG 1 cut(s) 1659
BbrPI CACGTG 1 cut(s) 2852
BbsI GAAGAC 1 cut(s) 340
Bbv12I GWGCWC 2 cut(s) 298, 5571
BbvCI CCTCAGC 1 cut(s) 4883
BceAI ACGGC 1 cut(s) 1274
BcgI CGANNNNNNTGC 4 cut(s) 696, 730, 2786, 2820
BciT130I CCWGG 5 cut(s) 675, 1949, 2991, 3507, 5491
BciVI GTATCC 3 cut(s) 1400, 2193, 3586
BclI TGATCA 1 cut(s) 4221
BcnI CCSGG 1 cut(s) 1766
BfmI CTRYAG 7 cut(s) 754, 1559, 1990, 2478, 3039, 3186, 5472
BfoI RGCGCY 1 cut(s) 2620
BfrI CTTAAG 1 cut(s) 373
BfuAI ACCTGC 3 cut(s) 1706, 3089, 3538
BfuI GTATCC 3 cut(s) 1400, 2193, 3586
BglII AGATCT 5 cut(s) 832, 2151, 3767, 4610, 5117
BlpI GCTNAGC 2 cut(s) 2949, 5396
Bme1390I CCNGG 6 cut(s) 675, 1766, 1949, 2991, 3507, 5491
Bme18I GGWCC 4 cut(s) 1945, 2413, 3793, 4415
BmeRI GACNNNNNGTC 1 cut(s) 1269
BmeT110I CYCGRG 2 cut(s) 2430, 4989
BmgT120I GGNCC 7 cut(s) 801, 1762, 1945, 2413, 2494, 3793, 4415
BmiI GGNNCC 3 cut(s) 803, 3795, 4404
BmrFI CCNGG 6 cut(s) 675, 1766, 1949, 2991, 3507, 5491
BmrI ACTGGG 1 cut(s) 3754
BmtI GCTAGC 1 cut(s) 4988
BmuI ACTGGG 1 cut(s) 3754
BpiI GAAGAC 1 cut(s) 340
BplI GAGNNNNNCTC 2 cut(s) 3928, 3960
BpmI CTGGAG 5 cut(s) 124, 541, 2043, 2863, 3012
Bpu10I CCTNAGC 2 cut(s) 2613, 4883
Bpu1102I GCTNAGC 2 cut(s) 2949, 5396
Bpu14I TTCGAA 1 cut(s) 4675
BpuEI CTTGAG 5 cut(s) 488, 791, 1509, 3380, 4643
BpuMI CCSGG 1 cut(s) 1766
Bsa29I ATCGAT 2 cut(s) 706, 3626
BsaAI YACGTR 2 cut(s) 2852, 4955
BsaBI GATNNNNATC 2 cut(s) 4574, 5220
BsaHI GRCGYC 1 cut(s) 4454
BsaI GGTCTC 3 cut(s) 247, 517, 3948
BsaJI CCNNGG 5 cut(s) 1578, 1707, 4295, 4474, 5211
BsaXI ACNNNNNCTCC 6 cut(s) 97, 127, 2836, 2866, 5434, 5464
Bsc4I CCNNNNNNNGG 8 cut(s) 65, 146, 697, 811, 1030, 1526, 4412, 4424
Bse118I RCCGGY 2 cut(s) 3810, 3939
Bse21I CCTNAGG 3 cut(s) 3011, 4934, 5183
Bse3DI GCAATG 8 cut(s) 331, 396, 1177, 2002, 3364, 4212, 4224, 4516
Bse8I GATNNNNATC 2 cut(s) 4574, 5220
BseBI CCWGG 5 cut(s) 675, 1949, 2991, 3507, 5491
BseCI ATCGAT 2 cut(s) 706, 3626
BseDI CCNNGG 5 cut(s) 1578, 1707, 4295, 4474, 5211
BseJI GATNNNNATC 2 cut(s) 4574, 5220
BseLI CCNNNNNNNGG 8 cut(s) 65, 146, 697, 811, 1030, 1526, 4412, 4424
BseMI GCAATG 8 cut(s) 331, 396, 1177, 2002, 3364, 4212, 4224, 4516
BsePI GCGCGC 1 cut(s) 18
BseRI GAGGAG 2 cut(s) 3800, 4900
BseYI CCCAGC 1 cut(s) 3146
Bsh1236I CGCG 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 4402
BshVI ATCGAT 2 cut(s) 706, 3626
BsiHKAI GWGCWC 2 cut(s) 298, 5571
BsiHKCI CYCGRG 2 cut(s) 2430, 4989
BsiSI CCGG 5 cut(s) 1329, 1765, 3811, 3940, 5528
BslFI GGGAC 5 cut(s) 677, 1252, 3779, 4827, 5701
BslI CCNNNNNNNGG 8 cut(s) 65, 146, 697, 811, 1030, 1526, 4412, 4424
BsmBI CGTCTC 2 cut(s) 3294, 4461
BsmFI GGGAC 5 cut(s) 677, 1252, 3779, 4827, 5701
BsmI GAATGC 2 cut(s) 3460, 4694
Bso31I GGTCTC 3 cut(s) 247, 517, 3948
BsoBI CYCGRG 2 cut(s) 2430, 4989
Bsp119I TTCGAA 1 cut(s) 4675
Bsp1286I GDGCHC 2 cut(s) 298, 5571
Bsp1407I TGTACA 4 cut(s) 1932, 2776, 3601, 5599
Bsp1720I GCTNAGC 2 cut(s) 2949, 5396
Bsp19I CCATGG 2 cut(s) 4295, 4474
BspACI CCGC 7 cut(s) 823, 1338, 2396, 3713, 4627, 5007, 5430
BspDI ATCGAT 2 cut(s) 706, 3626
BspFNI CGCG 1 cut(s) 20
BspHI TCATGA 3 cut(s) 2869, 3337, 3697
BspLI GGNNCC 3 cut(s) 803, 3795, 4404
BspMAI CTGCAG 3 cut(s) 1563, 1994, 3190
BspMI ACCTGC 3 cut(s) 1706, 3089, 3538
BspOI GCTAGC 1 cut(s) 4988
BspPI GGATC 8 cut(s) 1008, 1959, 2406, 2542, 3631, 4323, 4583, 5216
BspQI GCTCTTC 2 cut(s) 568, 4997
BspT104I TTCGAA 1 cut(s) 4675
BspT107I GGYRCC 1 cut(s) 4402
BspTI CTTAAG 1 cut(s) 373
BspTNI GGTCTC 3 cut(s) 247, 517, 3948
BsrBI CCGCTC 3 cut(s) 3715, 4627, 5007
BsrDI GCAATG 8 cut(s) 331, 396, 1177, 2002, 3364, 4212, 4224, 4516
BsrFI RCCGGY 2 cut(s) 3810, 3939
BsrGI TGTACA 4 cut(s) 1932, 2776, 3601, 5599
BssAI RCCGGY 2 cut(s) 3810, 3939
BssECI CCNNGG 5 cut(s) 1578, 1707, 4295, 4474, 5211
BssHII GCGCGC 1 cut(s) 18
BssNI GRCGYC 1 cut(s) 4454
BssSI CACGAG 1 cut(s) 1659
BssT1I CCWWGG 4 cut(s) 1578, 1707, 4295, 4474
Bst2BI CACGAG 1 cut(s) 1659
Bst2UI CCWGG 5 cut(s) 675, 1949, 2991, 3507, 5491
Bst6I CTCTTC 3 cut(s) 568, 1998, 4997
BstACI GRCGYC 1 cut(s) 4454
BstAFI CTTAAG 1 cut(s) 373
BstAPI GCANNNNNTGC 1 cut(s) 2655
BstAUI TGTACA 4 cut(s) 1932, 2776, 3601, 5599
BstBAI YACGTR 2 cut(s) 2852, 4955
BstBI TTCGAA 1 cut(s) 4675
BstDSI CCRYGG 3 cut(s) 4295, 4474, 5211
BstENI CCTNNNNNAGG 1 cut(s) 4410
BstFNI CGCG 1 cut(s) 20
BstH2I RGCGCY 1 cut(s) 2620
BstHHI GCGC 6 cut(s) 20, 22, 2619, 2979, 3371, 5769
BstNI CCWGG 5 cut(s) 675, 1949, 2991, 3507, 5491
BstNSI RCATGY 8 cut(s) 400, 646, 1187, 2653, 3296, 4976, 5404, 5729
BstSCI CCNGG 6 cut(s) 673, 1764, 1947, 2989, 3505, 5489
BstSFI CTRYAG 7 cut(s) 754, 1559, 1990, 2478, 3039, 3186, 5472
BstUI CGCG 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 340
BstX2I RGATCY 9 cut(s) 832, 1000, 1951, 2151, 3767, 4315, 4575, 4610, 5117
BstXI CCANNNNNNTGG 1 cut(s) 798
BstYI RGATCY 9 cut(s) 832, 1000, 1951, 2151, 3767, 4315, 4575, 4610, 5117
Bsu15I ATCGAT 2 cut(s) 706, 3626
Bsu36I CCTNAGG 3 cut(s) 3011, 4934, 5183
BsuI GTATCC 3 cut(s) 1400, 2193, 3586
BsuTUI ATCGAT 2 cut(s) 706, 3626
BtgI CCRYGG 3 cut(s) 4295, 4474, 5211
BtgZI GCGATG 1 cut(s) 5723
BtsI GCAGTG 1 cut(s) 5507
BveI ACCTGC 3 cut(s) 1706, 3089, 3538
CaiI CAGNNNCTG 3 cut(s) 1082, 4705, 4816
CciI TCATGA 3 cut(s) 2869, 3337, 3697
CfoI GCGC 6 cut(s) 20, 22, 2619, 2979, 3371, 5769
Cfr10I RCCGGY 2 cut(s) 3810, 3939
Cfr13I GGNCC 7 cut(s) 801, 1762, 1945, 2413, 2494, 3793, 4415
ClaI ATCGAT 2 cut(s) 706, 3626
CseI GACGC 1 cut(s) 4443
CspCI CAANNNNNGTGG 2 cut(s) 4369, 4404
DraI TTTAAA 3 cut(s) 1981, 5242, 5251
DrdI GACNNNNNNGTC 1 cut(s) 1188
DriI GACNNNNNGTC 1 cut(s) 1269
DseDI GACNNNNNNGTC 1 cut(s) 1188
EaeI YGGCCR 4 cut(s) 2889, 3315, 5525, 5623
Eam1104I CTCTTC 3 cut(s) 568, 1998, 4997
Eam1105I GACNNNNNGTC 1 cut(s) 1269
EarI CTCTTC 3 cut(s) 568, 1998, 4997
Eco130I CCWWGG 4 cut(s) 1578, 1707, 4295, 4474
Eco147I AGGCCT 2 cut(s) 3045, 3523
Eco31I GGTCTC 3 cut(s) 247, 517, 3948
Eco32I GATATC 1 cut(s) 688
Eco47I GGWCC 4 cut(s) 1945, 2413, 3793, 4415
Eco47III AGCGCT 1 cut(s) 2618
Eco57I CTGAAG 6 cut(s) 596, 2225, 2817, 2961, 4016, 4682
Eco72I CACGTG 1 cut(s) 2852
Eco81I CCTNAGG 3 cut(s) 3011, 4934, 5183
Eco88I CYCGRG 2 cut(s) 2430, 4989
EcoNI CCTNNNNNAGG 1 cut(s) 4410
EcoO109I RGGNCCY 2 cut(s) 2494, 4415
EcoRI GAATTC 3 cut(s) 901, 2573, 3580
EcoRII CCWGG 5 cut(s) 673, 1947, 2989, 3505, 5489
EcoRV GATATC 1 cut(s) 688
EcoT14I CCWWGG 4 cut(s) 1578, 1707, 4295, 4474
EcoT22I ATGCAT 4 cut(s) 4214, 4694, 5102, 5727
ErhI CCWWGG 4 cut(s) 1578, 1707, 4295, 4474
Esp3I CGTCTC 2 cut(s) 3294, 4461
FalI AAGNNNNNCTT 4 cut(s) 1309, 1341, 1683, 1715
FaqI GGGAC 5 cut(s) 677, 1252, 3779, 4827, 5701
FauNDI CATATG 4 cut(s) 1137, 1591, 2973, 5096
FbaI TGATCA 1 cut(s) 4221
FblI GTMKAC 6 cut(s) 543, 1531, 3570, 4046, 4557, 4969
FspAI RTGCGCAY 1 cut(s) 2978
FspI TGCGCA 2 cut(s) 2978, 3370
GlaI GCGC 6 cut(s) 19, 21, 2618, 2978, 3370, 5768
GsaI CCCAGC 1 cut(s) 3150
GsuI CTGGAG 5 cut(s) 124, 541, 2043, 2863, 3012
HaeII RGCGCY 1 cut(s) 2620
HapII CCGG 5 cut(s) 1329, 1765, 3811, 3940, 5528
HgaI GACGC 1 cut(s) 4443
HhaI GCGC 6 cut(s) 20, 22, 2619, 2979, 3371, 5769
Hin1I GRCGYC 1 cut(s) 4454
Hin6I GCGC 6 cut(s) 18, 20, 2617, 2977, 3369, 5767
HinP1I GCGC 6 cut(s) 18, 20, 2617, 2977, 3369, 5767
HincII GTYRAC 5 cut(s) 316, 1532, 1638, 2172, 4047
HindII GTYRAC 5 cut(s) 316, 1532, 1638, 2172, 4047
HindIII AAGCTT 4 cut(s) 506, 1646, 3881, 4265
HpaII CCGG 5 cut(s) 1329, 1765, 3811, 3940, 5528
Hpy99I CGWCG 1 cut(s) 1890
HpyCH4IV ACGT 3 cut(s) 2851, 4954, 5449
HpySE526I ACGT 3 cut(s) 2851, 4954, 5449
Hsp92I GRCGYC 1 cut(s) 4454
HspAI GCGC 6 cut(s) 18, 20, 2617, 2977, 3369, 5767
Ksp22I TGATCA 1 cut(s) 4221
LguI GCTCTTC 2 cut(s) 568, 4997
LmnI GCTCC 3 cut(s) 2305, 5442, 5566
MaeII ACGT 3 cut(s) 2851, 4954, 5449
MbiI CCGCTC 3 cut(s) 3715, 4627, 5007
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 9 cut(s) 832, 1000, 1951, 2151, 3767, 4315, 4575, 4610, 5117
MhlI GDGCHC 2 cut(s) 298, 5571
MlsI TGGCCA 3 cut(s) 2891, 3317, 5625
MluNI TGGCCA 3 cut(s) 2891, 3317, 5625
MlyI GAGTC 9 cut(s) 59, 1279, 1671, 2594, 2700, 3328, 3797, 3997, 5649
MmeI TCCRAC 7 cut(s) 663, 1159, 1719, 2763, 4763, 5289, 5437
Mox20I TGGCCA 3 cut(s) 2891, 3317, 5625
Mph1103I ATGCAT 4 cut(s) 4214, 4694, 5102, 5727
MroXI GAANNNNTTC 4 cut(s) 449, 467, 4304, 5535
MscI TGGCCA 3 cut(s) 2891, 3317, 5625
Msp20I TGGCCA 3 cut(s) 2891, 3317, 5625
MspA1I CMGCKG 1 cut(s) 5663
MspCI CTTAAG 1 cut(s) 373
MspI CCGG 5 cut(s) 1329, 1765, 3811, 3940, 5528
MspR9I CCNGG 6 cut(s) 675, 1766, 1949, 2991, 3507, 5491
MssI GTTTAAAC 1 cut(s) 1981
MunI CAATTG 1 cut(s) 615
Mva1269I GAATGC 2 cut(s) 3460, 4694
MvaI CCWGG 5 cut(s) 675, 1949, 2991, 3507, 5491
MvnI CGCG 1 cut(s) 20
NciI CCSGG 1 cut(s) 1766
NcoI CCATGG 2 cut(s) 4295, 4474
NdeI CATATG 4 cut(s) 1137, 1591, 2973, 5096
NheI GCTAGC 1 cut(s) 4984
NlaIV GGNNCC 3 cut(s) 803, 3795, 4404
NmuCI GTSAC 6 cut(s) 219, 232, 1261, 1585, 3656, 4322
NsbI TGCGCA 2 cut(s) 2978, 3370
NsiI ATGCAT 4 cut(s) 4214, 4694, 5102, 5727
NspI RCATGY 8 cut(s) 400, 646, 1187, 2653, 3296, 4976, 5404, 5729
NspV TTCGAA 1 cut(s) 4675
PaeI GCATGC 2 cut(s) 5404, 5729
PaeR7I CTCGAG 2 cut(s) 2430, 4989
PagI TCATGA 3 cut(s) 2869, 3337, 3697
PaqCI CACCTGC 1 cut(s) 1706
PauI GCGCGC 1 cut(s) 18
PceI AGGCCT 2 cut(s) 3045, 3523
PciI ACATGT 2 cut(s) 396, 4972
PciSI GCTCTTC 2 cut(s) 568, 4997
PcsI WCGNNNNNNNCGW 1 cut(s) 5705
PctI GAATGC 2 cut(s) 3460, 4694
PdmI GAANNNNTTC 4 cut(s) 449, 467, 4304, 5535
PflMI CCANNNNNTGG 1 cut(s) 697
PfoI TCCNGGA 3 cut(s) 1947, 2989, 5489
PleI GAGTC 9 cut(s) 58, 1278, 1670, 2594, 2700, 3328, 3796, 3997, 5649
PmaCI CACGTG 1 cut(s) 2852
PmeI GTTTAAAC 1 cut(s) 1981
PmlI CACGTG 1 cut(s) 2852
PpsI GAGTC 9 cut(s) 58, 1278, 1670, 2594, 2700, 3328, 3796, 3997, 5649
Ppu21I YACGTR 2 cut(s) 2852, 4955
PpuMI RGGWCCY 1 cut(s) 4415
PscI ACATGT 2 cut(s) 396, 4972
PsiI TTATAA 2 cut(s) 4271, 4356
Psp5II RGGWCCY 1 cut(s) 4415
Psp6I CCWGG 5 cut(s) 673, 1947, 2989, 3505, 5489
PspCI CACGTG 1 cut(s) 2852
PspFI CCCAGC 1 cut(s) 3146
PspGI CCWGG 5 cut(s) 673, 1947, 2989, 3505, 5489
PspN4I GGNNCC 3 cut(s) 803, 3795, 4404
PspPI GGNCC 7 cut(s) 801, 1762, 1945, 2413, 2494, 3793, 4415
PspPPI RGGWCCY 1 cut(s) 4415
PspXI VCTCGAGB 1 cut(s) 4989
PstI CTGCAG 3 cut(s) 1563, 1994, 3190
PstNI CAGNNNCTG 3 cut(s) 1082, 4705, 4816
PsuI RGATCY 9 cut(s) 832, 1000, 1951, 2151, 3767, 4315, 4575, 4610, 5117
PteI GCGCGC 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 5663
SalI GTCGAC 2 cut(s) 1530, 4045
SapI GCTCTTC 2 cut(s) 568, 4997
Sau96I GGNCC 7 cut(s) 801, 1762, 1945, 2413, 2494, 3793, 4415
SchI GAGTC 9 cut(s) 59, 1279, 1671, 2594, 2700, 3328, 3797, 3997, 5649
ScrFI CCNGG 6 cut(s) 675, 1766, 1949, 2991, 3507, 5491
SduI GDGCHC 2 cut(s) 298, 5571
SfcI CTRYAG 7 cut(s) 754, 1559, 1990, 2478, 3039, 3186, 5472
Sfr274I CTCGAG 2 cut(s) 2430, 4989
SfuI TTCGAA 1 cut(s) 4675
SinI GGWCC 4 cut(s) 1945, 2413, 3793, 4415
SlaI CTCGAG 2 cut(s) 2430, 4989
SmlI CTYRAG 8 cut(s) 373, 503, 770, 1524, 2430, 3359, 4622, 4989
SmoI CTYRAG 8 cut(s) 373, 503, 770, 1524, 2430, 3359, 4622, 4989
SphI GCATGC 2 cut(s) 5404, 5729
SseBI AGGCCT 2 cut(s) 3045, 3523
SsiI CCGC 7 cut(s) 823, 1338, 2396, 3713, 4627, 5007, 5430
SspI AATATT 4 cut(s) 3281, 3485, 4394, 5238
StuI AGGCCT 2 cut(s) 3045, 3523
StyD4I CCNGG 6 cut(s) 673, 1764, 1947, 2989, 3505, 5489
StyI CCWWGG 4 cut(s) 1578, 1707, 4295, 4474
TaiI ACGT 3 cut(s) 2854, 4957, 5452
TaqII GACCGA 1 cut(s) 3781
TatI WGTACW 7 cut(s) 1932, 2512, 2776, 3601, 4167, 4893, 5599
TauI GCSGC 2 cut(s) 4630, 5432
TseFI GTSAC 6 cut(s) 219, 232, 1261, 1585, 3656, 4322
Tsp45I GTSAC 6 cut(s) 219, 232, 1261, 1585, 3656, 4322
TspGWI ACGGA 3 cut(s) 2405, 4757, 5214
Van91I CCANNNNNTGG 1 cut(s) 697
Vha464I CTTAAG 1 cut(s) 373
VpaK11BI GGWCC 4 cut(s) 1945, 2413, 3793, 4415
XagI CCTNNNNNAGG 1 cut(s) 4410
XbaI TCTAGA 2 cut(s) 4279, 5384
XceI RCATGY 8 cut(s) 400, 646, 1187, 2653, 3296, 4976, 5404, 5729
XhoI CTCGAG 2 cut(s) 2430, 4989
XmiI GTMKAC 6 cut(s) 543, 1531, 3570, 4046, 4557, 4969
XmnI GAANNNNTTC 4 cut(s) 449, 467, 4304, 5535
Zsp2I ATGCAT 4 cut(s) 4214, 4694, 5102, 5727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.