RchiOBHm_Chr4g0446001

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000223
Physical Location & Seq
Forward (+)
66315066 .. 66320209
5144 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41354

Sequence Viewer

Length: 3006 bp
ATGGAGGTTTCCGGCAAGAAAAAGATCAAGCCTGACCCTTTCACTGATACTGTGTTTTCTTGGTCCCTGGAGAACATTTTCAATGAGGATCTTTACAAAGACAAGGTGAAAAAGATTCCTGAATCATTTCAATCGGCTCAGCATTACTTTGGGTCTTATATATATCCTTTACTGGAAGAAACCCGAGCAGAAGTGCATTCAAGTATGGAAACTCTTAATCGAGCACCGTTTGCTGAAGTAGTTGGTTTTGTAGAAGCCAAGCCATATGGAACAAAGCTATATGATGTCAAGGTTGATTACTGGCGAAACAGGTTCAGTGATAGTGGCAAGGAGCCATATAAAACTTTGCCGGGTGATCTTTTTGTTTTATCTGATGCTAAACCTGAAACTGTTTCTGACTTACAAAGAGAAGGGAGGTCATGGGCTTTTGCATCGGCCACTAATGTCTCAGAAAGTGATAATGAAGATGACAGTACCTCTCTTTATTTTAAAATCAAGGCATCAAAAGAGTTTGAAGTCGAAAATAGCAGGACATCACTTTTTATAGTTTTCTTGGTGAATTTAATCCCTGAAGGAAGAATTTGGAAAGCGTTGCACATGTTCAGAAATCTGAAGATTATCAACGAAGTTCTATGCACTGATTCTATGGTTCAGAAAGATTTCTGCTCTGAAAGGAACAATGACATCTGGAATCAGAGTATAGTTGAGAGTTTATCATCTGGATTGAATGAATCCCAAACTGGGGCAGTGTTGGCCTGCCTTGAAATGCTGCATTCTGGTGAAAAGTCTGCCGTGGAACTTATCTGGGGTCCTCCTGGTACTGGAAAAACAAAAACCACAGTTACTCTGCTTTCAACCCTGCTACAGATGAATTGTAGGACTCTTATTTGTGCTCCAACAAATGTTGCAATAACTGAAATTGCTTCTCGTCTTGTGAAGATGGTGAGTAAAGCAGAGCCAAATGATTTGTATTGTTCTTTAGGAGAGATTCTTTTATTTGGGAATAAGGAGCGACTCAAAATTGGTTCAGACATTGAAGAAATTTATATGGATTGCCGTGTCAAAAGACTTGTAGATTGTTTGGGGCCAAGGACTGGTTGGAGGCATTGCTTTGCTTCCATGATCGGTTTACTTGAGGATTGTGTTTCGGATTACCATATTTCCTTGGAAAATGAGTTCACAAAAGAGACCGAACAAAAGAATGTTAGTGAAACGAAAGATAAAGAATCCAGAAGTGGTGTTCAAGTTAAAAAGGGGAAGTGCAAAACATTTGTTCAATTTTTGAGACATAGATTTGCATATACTGCAACGCCGATAAGATATTGTATTTCTGTGTTCTGTACTCATATAGGGAAAAATTATATTTCGGTAGACAATTTCCAAGACTTGGTTTCGCTTATCCGGTTAGTTGATTCCTTTGAGTTACTTCTGTCTCAAGGTAATGTTGTTTCTGAAGTGTTGGAAGAACTCTTTTCTCATTCAGATGTTGAAGATGTGTCTGAGTCATTTGTAGGAAACTCCTTTGATCTTTGTATGATGAGAAGGGATTGCATTTCGGCTTTACGCACTCTACGGGATTCTCTTAGTCAACTAAAACTTCCAAATATTACGAATGAGGAATCTATTCGGGAGTTCTGTTTTCAAAGAGCATCTCTAATATTTTGCACTGCATCTAGTTCGTATAAGCTGCATAGAGTGGCAATGGAACCACTAAGCATTGTTGTTATTGACGAGGCTGCACAGCTAAAAGAGTGTGAGTCCACGATACCTCTGCAACTTCGAGGTGTGAAGCGTGCTGTTCTTGTTGGTGATGAACGTCAGTTATCAGCTACGGTAAAAAGCAAAGTTTCTGATGAAGCTGGTTTTGCAAGAAGCTTATTTGAGAGGTTGAGCTTAATGGGTCATTCAAAACATCTTTTAAATATGCAATACAGAATGCATCCATCAATAAGTTTATTCCCAAATTCAAATTTCTATTTTAACTTGATCCTGGATGCTCCAAATGTAAAACGAAGAAGCTATGAGAAGCACTATCTTCCAGGAGCAATGTTTGGTCCATATTCTTTTATAAATGTGATTGGTGGAAGAGAGGAGAAAGATGAGGATGGACATAGTCGGAAAAATATGGTGGAGGTTGCTATTGTTTCAAAAATACTGCGGAATCTGTACAAAGAATGGGTCAAATCAAAACAGAGACTCAGTATTGGTATAGTATCTCCCTATGCCGCTCAAGTAGTCGCAATTAAGGACAGAATGGGTGAGAAGTATGATAGGCTTGATGGCTTTGTAGTGAAGGTAAAAACAGTTGATGGGTTCCAAGGTGGGGAAGAGGATATAATTATAATGTCCACTGTACGATCCAACAGCCAGCAATCACTTGAATTCATTTCAAAATTGCAAAGAGTTAATGTCTCTATTACAAGGGCTAGGCACTGTTTGTGGATTTTGGGCAATGAAAGAACTCTTTCCGATAGTGAATCTGTTTGGAAGGCCTTGGTCCTTGATGCCAAAGGTCGTCAATGCTTCTTTAATGCCGATGAAGACAAGGATTTAGCCAAGGCCATATTAGAGGTAAAGAAAGAGTTTGACCAATTTGATGATTTGCTCAATGCCGACAGCGTACTTTTTAGAAGTGCTAGATGGAAGGTACTTTTCAGTGATAACTTTCTGAAGTCATTCAAGAAATTGACATCAGTCCGCTTGAAGAAGTCAGTGCTAAATCTTCTACTGAAGCTTTCCAGTGGTTGGAGACCTAAGAAGCAAAATGTTGAGACAATTTCTGGTAGCTCTTGCATGATCTTGAAGAAATTTAAGGTTGAAGGTCTATACATTGTTTGCACTAATGACATTGCAAAGAACCTGCAGTACGTTCAAGTATTAAAGATCTGGGACTTATTGCCTCTAGAGGATATCCCAAAGTTGATAAACCGCCTGGATAGTATTTTCAACAGATATACTGATAACTTTATTAATCTTTGCAAGGACAAGTGTCTCGATGGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

1001

Amino Acids

114.1

Weight (kDa)

7.85

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 76 - 204 7.3e-66 Domain of unknown function (DUF6469)
AAA_11 PF13086 242 - 450 1.6e-17 AAA domain
AAA_19 PF13245 262 - 312 2.9e-06 AAA domain
AAA_11 PF13086 522 - 615 1.4e-18 AAA domain
AAA_12 PF13087 623 - 819 9.6e-56 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2069, 2342
Acc36I ACCTGC 1 cut(s) 2868
AccB7I CCANNNNNTGG 3 cut(s) 1094, 1387, 2745
AccBSI CCGCTC 1 cut(s) 2228
AccI GTMKAC 1 cut(s) 1371
AciI CCGC 4 cut(s) 2158, 2226, 2698, 2929
AclWI GGATC 3 cut(s) 96, 1981, 2352
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 7 cut(s) 559, 579, 1041, 1963, 1969, 2381, 2807
AcuI CTGAAG 6 cut(s) 255, 591, 632, 1473, 2690, 2750
AfaI GTAC 8 cut(s) 475, 820, 1342, 2168, 2355, 2622, 2649, 2867
AfiI CCNNNNNNNGG 7 cut(s) 741, 742, 821, 1094, 1387, 2323, 2745
AflIII ACRYGT 1 cut(s) 597
AjnI CCWGG 5 cut(s) 66, 814, 1989, 2038, 2931
AloI GAACNNNNNNTCC 2 cut(s) 1160, 1192
Alw21I GWGCWC 2 cut(s) 226, 895
Alw26I GTCTC 9 cut(s) 451, 1181, 1279, 1437, 2188, 2416, 2743, 2765, 2996
AlwI GGATC 3 cut(s) 96, 1981, 2352
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 5 cut(s) 435, 753, 1085, 2490, 2559
ApeKI GCWGC 3 cut(s) 769, 1687, 1736
ApoI RAATTY 7 cut(s) 559, 579, 1041, 1963, 1969, 2381, 2807
ArsI GACNNNNNNTTYG 2 cut(s) 2163, 2195
AseI ATTAAT 1 cut(s) 2970
Asp700I GAANNNNTTC 6 cut(s) 77, 126, 659, 1623, 2464, 2675
AspS9I GGNCC 5 cut(s) 63, 809, 1085, 2054, 2497
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 7 cut(s) 118, 365, 568, 791, 955, 1820, 2270
AvaI CYCGRG 1 cut(s) 183
AvaII GGWCC 4 cut(s) 63, 809, 2054, 2497
BbsI GAAGAC 1 cut(s) 2547
Bbv12I GWGCWC 2 cut(s) 226, 895
BbvI GCAGC 3 cut(s) 756, 1674, 1723
BccI CCATC 7 cut(s) 934, 1951, 2099, 2273, 2303, 2634, 2990
BceAI ACGGC 2 cut(s) 776, 1041
BcgI CGANNNNNNTGC 4 cut(s) 1659, 1693, 1753, 1787
BciT130I CCWGG 5 cut(s) 68, 816, 1991, 2040, 2933
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 9 cut(s) 451, 1181, 1279, 1437, 2188, 2416, 2743, 2765, 2996
BfaI CTAG 4 cut(s) 1674, 2427, 2637, 2903
BfmI CTRYAG 2 cut(s) 863, 2861
BfuAI ACCTGC 1 cut(s) 2868
BglII AGATCT 1 cut(s) 2883
BisI GCNGC 4 cut(s) 770, 1688, 1737, 2226
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 4 cut(s) 771, 1689, 1738, 2227
Bme1390I CCNGG 6 cut(s) 68, 351, 816, 1991, 2040, 2933
Bme18I GGWCC 4 cut(s) 63, 809, 2054, 2497
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 5 cut(s) 63, 809, 1085, 2054, 2497
BmiI GGNNCC 6 cut(s) 65, 333, 810, 1086, 1707, 2315
BmrFI CCNGG 6 cut(s) 68, 351, 816, 1991, 2040, 2933
BmrI ACTGGG 1 cut(s) 750
BmsI GCATC 8 cut(s) 364, 440, 509, 1658, 1679, 1948, 1984, 2494
BmuI ACTGGG 1 cut(s) 750
BoxI GACNNNNGTC 2 cut(s) 2693, 2988
BpiI GAAGAC 1 cut(s) 2547
BpmI CTGGAG 1 cut(s) 89
Bpu1102I GCTNAGC 1 cut(s) 138
BpuEI CTTGAG 3 cut(s) 1154, 1419, 2214
BpuMI CCSGG 1 cut(s) 351
BsaI GGTCTC 2 cut(s) 1181, 2743
BsaJI CCNNGG 7 cut(s) 66, 792, 1088, 1164, 2317, 2493, 2556
BsaWI WCCGGW 1 cut(s) 1401
Bsc4I CCNNNNNNNGG 7 cut(s) 741, 742, 821, 1094, 1387, 2323, 2745
Bse1I ACTGG 6 cut(s) 177, 305, 745, 826, 1099, 2739
Bse3DI GCAATG 5 cut(s) 1105, 1707, 2052, 2458, 2847
BseBI CCWGG 5 cut(s) 68, 816, 1991, 2040, 2933
BseDI CCNNGG 7 cut(s) 66, 792, 1088, 1164, 2317, 2493, 2556
BseGI GGATG 3 cut(s) 1939, 1999, 2110
BseLI CCNNNNNNNGG 7 cut(s) 741, 742, 821, 1094, 1387, 2323, 2745
BseMI GCAATG 5 cut(s) 1105, 1707, 2052, 2458, 2847
BseMII CTCAG 4 cut(s) 152, 462, 1491, 2212
BseNI ACTGG 6 cut(s) 177, 305, 745, 826, 1099, 2739
BseRI GAGGAG 1 cut(s) 2105
BseXI GCAGC 3 cut(s) 756, 1674, 1723
BsgI GTGCAG 1 cut(s) 1722
BshFI GGCC 5 cut(s) 437, 755, 1087, 2492, 2561
BsiHKAI GWGCWC 2 cut(s) 226, 895
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 3 cut(s) 12, 350, 1402
BslFI GGGAC 2 cut(s) 49, 2903
BslI CCNNNNNNNGG 7 cut(s) 741, 742, 821, 1094, 1387, 2323, 2745
BsmAI GTCTC 9 cut(s) 451, 1181, 1279, 1437, 2188, 2416, 2743, 2765, 2996
BsmFI GGGAC 2 cut(s) 49, 2903
BsmI GAATGC 3 cut(s) 196, 772, 1941
BsnI GGCC 5 cut(s) 437, 755, 1087, 2492, 2561
Bso31I GGTCTC 2 cut(s) 1181, 2743
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 226, 895
Bsp1407I TGTACA 1 cut(s) 2166
Bsp143I GATC 9 cut(s) 24, 88, 355, 1122, 1525, 1986, 2357, 2796, 2883
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 4 cut(s) 2158, 2226, 2698, 2929
BspANI GGCC 5 cut(s) 437, 755, 1087, 2492, 2561
BspCNI CTCAG 4 cut(s) 151, 461, 1492, 2211
BspLI GGNNCC 6 cut(s) 65, 333, 810, 1086, 1707, 2315
BspMAI CTGCAG 1 cut(s) 2865
BspMI ACCTGC 1 cut(s) 2868
BspPI GGATC 3 cut(s) 96, 1981, 2352
BspTNI GGTCTC 2 cut(s) 1181, 2743
BsrBI CCGCTC 1 cut(s) 2228
BsrDI GCAATG 5 cut(s) 1105, 1707, 2052, 2458, 2847
BsrGI TGTACA 1 cut(s) 2166
BsrI ACTGG 6 cut(s) 177, 305, 745, 826, 1099, 2739
BssECI CCNNGG 7 cut(s) 66, 792, 1088, 1164, 2317, 2493, 2556
BssMI GATC 9 cut(s) 24, 88, 355, 1122, 1525, 1986, 2357, 2796, 2883
BssT1I CCWWGG 5 cut(s) 1088, 1164, 2317, 2493, 2556
Bst2UI CCWGG 5 cut(s) 68, 816, 1991, 2040, 2933
Bst4CI ACNGT 9 cut(s) 52, 228, 391, 473, 841, 1834, 2305, 2353, 2435
Bst6I CTCTTC 2 cut(s) 2080, 2322
BstAPI GCANNNNNTGC 2 cut(s) 230, 1304
BstAUI TGTACA 1 cut(s) 2166
BstC8I GCNNGC 3 cut(s) 757, 1794, 2369
BstDEI CTNAG 7 cut(s) 138, 448, 1500, 1583, 1712, 2198, 2754
BstDSI CCRYGG 1 cut(s) 792
BstF5I GGATG 3 cut(s) 1939, 1999, 2110
BstKTI GATC 9 cut(s) 27, 91, 358, 1125, 1528, 1989, 2360, 2799, 2886
BstMAI GTCTC 9 cut(s) 451, 1181, 1279, 1437, 2188, 2416, 2743, 2765, 2996
BstMBI GATC 9 cut(s) 24, 88, 355, 1122, 1525, 1986, 2357, 2796, 2883
BstMWI GCNNNNNNNGC 4 cut(s) 230, 752, 1304, 1865
BstNI CCWGG 5 cut(s) 68, 816, 1991, 2040, 2933
BstNSI RCATGY 1 cut(s) 601
BstPAI GACNNNNGTC 2 cut(s) 2693, 2988
BstSCI CCNGG 6 cut(s) 66, 349, 814, 1989, 2038, 2931
BstSFI CTRYAG 2 cut(s) 863, 2861
BstV1I GCAGC 3 cut(s) 756, 1674, 1723
BstV2I GAAGAC 1 cut(s) 2547
BstX2I RGATCY 2 cut(s) 88, 2883
BstYI RGATCY 2 cut(s) 88, 2883
BsuRI GGCC 5 cut(s) 437, 755, 1087, 2492, 2561
BtgI CCRYGG 1 cut(s) 792
BtsCI GGATG 3 cut(s) 1939, 1999, 2110
BtsI GCAGTG 2 cut(s) 753, 1665
BveI ACCTGC 1 cut(s) 2868
Cac8I GCNNGC 3 cut(s) 757, 1794, 2369
Cfr13I GGNCC 5 cut(s) 63, 809, 1085, 2054, 2497
Csp6I GTAC 8 cut(s) 474, 819, 1341, 2167, 2354, 2621, 2648, 2866
CviAII CATG 4 cut(s) 420, 598, 1120, 2794
CviQI GTAC 8 cut(s) 474, 819, 1341, 2167, 2354, 2621, 2648, 2866
DdeI CTNAG 7 cut(s) 138, 448, 1500, 1583, 1712, 2198, 2754
DpnI GATC 9 cut(s) 26, 90, 357, 1124, 1527, 1988, 2359, 2798, 2885
DpnII GATC 9 cut(s) 24, 88, 355, 1122, 1525, 1986, 2357, 2796, 2883
DraI TTTAAA 2 cut(s) 490, 1920
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 2 cut(s) 2080, 2322
EarI CTCTTC 2 cut(s) 2080, 2322
Eco130I CCWWGG 5 cut(s) 1088, 1164, 2317, 2493, 2556
Eco147I AGGCCT 1 cut(s) 2492
Eco31I GGTCTC 2 cut(s) 1181, 2743
Eco32I GATATC 1 cut(s) 2911
Eco47I GGWCC 4 cut(s) 63, 809, 2054, 2497
Eco57I CTGAAG 6 cut(s) 255, 591, 632, 1473, 2690, 2750
Eco88I CYCGRG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 809
EcoRI GAATTC 1 cut(s) 2381
EcoRII CCWGG 5 cut(s) 66, 814, 1989, 2038, 2931
EcoRV GATATC 1 cut(s) 2911
EcoT14I CCWWGG 5 cut(s) 1088, 1164, 2317, 2493, 2556
EcoT22I ATGCAT 1 cut(s) 1941
ErhI CCWWGG 5 cut(s) 1088, 1164, 2317, 2493, 2556
FaeI CATG 4 cut(s) 423, 601, 1123, 2797
FaqI GGGAC 2 cut(s) 49, 2903
FatI CATG 4 cut(s) 419, 597, 1119, 2793
FauNDI CATATG 1 cut(s) 265
FblI GTMKAC 1 cut(s) 1371
Fnu4HI GCNGC 4 cut(s) 770, 1688, 1737, 2226
FokI GGATG 3 cut(s) 1926, 2006, 2117
Fsp4HI GCNGC 4 cut(s) 770, 1688, 1737, 2226
FspBI CTAG 4 cut(s) 1674, 2427, 2637, 2903
GluI GCNGC 4 cut(s) 770, 1688, 1737, 2226
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 5 cut(s) 437, 755, 1087, 2492, 2561
HapII CCGG 3 cut(s) 12, 350, 1402
Hin1II CATG 4 cut(s) 423, 601, 1123, 2797
HincII GTYRAC 1 cut(s) 1589
HindII GTYRAC 1 cut(s) 1589
HindIII AAGCTT 2 cut(s) 1873, 2732
HpaII CCGG 3 cut(s) 12, 350, 1402
HphI GGTGA 7 cut(s) 118, 365, 568, 791, 955, 1820, 2270
Hpy166II GTNNAC 6 cut(s) 1130, 1179, 1372, 1589, 1761, 2349
Hpy188III TCNNGA 9 cut(s) 119, 688, 720, 1230, 1628, 2680, 2800, 2903, 2993
Hpy8I GTNNAC 6 cut(s) 1130, 1179, 1372, 1589, 1761, 2349
HpyAV CCTTC 7 cut(s) 404, 566, 1536, 2287, 2482, 2638, 2813
HpyCH4III ACNGT 9 cut(s) 52, 228, 391, 473, 841, 1834, 2305, 2353, 2435
HpyCH4IV ACGT 2 cut(s) 1816, 2868
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 752, 1304, 1865
HpyF3I CTNAG 7 cut(s) 138, 448, 1500, 1583, 1712, 2198, 2754
HpySE526I ACGT 2 cut(s) 1816, 2868
Hsp92II CATG 4 cut(s) 423, 601, 1123, 2797
Kzo9I GATC 9 cut(s) 24, 88, 355, 1122, 1525, 1986, 2357, 2796, 2883
LmnI GCTCC 5 cut(s) 331, 898, 1009, 2002, 2042
Lsp1109I GCAGC 3 cut(s) 756, 1674, 1723
LweI GCATC 8 cut(s) 364, 440, 509, 1658, 1679, 1948, 1984, 2494
MaeI CTAG 4 cut(s) 1674, 2427, 2637, 2903
MaeII ACGT 2 cut(s) 1816, 2868
MaeIII GTNAC 2 cut(s) 841, 1422
MalI GATC 9 cut(s) 26, 90, 357, 1124, 1527, 1988, 2359, 2798, 2885
MbiI CCGCTC 1 cut(s) 2228
MboI GATC 9 cut(s) 24, 88, 355, 1122, 1525, 1986, 2357, 2796, 2883
MflI RGATCY 2 cut(s) 88, 2883
MhlI GDGCHC 2 cut(s) 226, 895
MlyI GAGTC 5 cut(s) 874, 1008, 1511, 1766, 2190
MmeI TCCRAC 6 cut(s) 920, 1079, 1440, 2096, 2385, 2726
Mph1103I ATGCAT 1 cut(s) 1941
MroXI GAANNNNTTC 6 cut(s) 77, 126, 659, 1623, 2464, 2675
MslI CAYNNNNRTG 2 cut(s) 777, 1482
MspI CCGG 3 cut(s) 12, 350, 1402
MspR9I CCNGG 6 cut(s) 68, 351, 816, 1991, 2040, 2933
Mva1269I GAATGC 3 cut(s) 196, 772, 1941
MvaI CCWGG 5 cut(s) 68, 816, 1991, 2040, 2933
MwoI GCNNNNNNNGC 4 cut(s) 230, 752, 1304, 1865
NciI CCSGG 1 cut(s) 351
NdeI CATATG 1 cut(s) 265
NdeII GATC 9 cut(s) 24, 88, 355, 1122, 1525, 1986, 2357, 2796, 2883
NlaIII CATG 4 cut(s) 423, 601, 1123, 2797
NlaIV GGNNCC 6 cut(s) 65, 333, 810, 1086, 1707, 2315
NsiI ATGCAT 1 cut(s) 1941
NspI RCATGY 1 cut(s) 601
PceI AGGCCT 1 cut(s) 2492
PciI ACATGT 1 cut(s) 597
PctI GAATGC 3 cut(s) 196, 772, 1941
PdmI GAANNNNTTC 6 cut(s) 77, 126, 659, 1623, 2464, 2675
PflFI GACNNNGTC 1 cut(s) 2112
PflMI CCANNNNNTGG 3 cut(s) 1094, 1387, 2745
PfoI TCCNGGA 2 cut(s) 1989, 2038
PkrI GCNGC 4 cut(s) 771, 1689, 1738, 2227
PleI GAGTC 5 cut(s) 874, 1008, 1510, 1765, 2190
PpsI GAGTC 5 cut(s) 874, 1008, 1510, 1765, 2190
PpuMI RGGWCCY 1 cut(s) 809
PscI ACATGT 1 cut(s) 597
PshAI GACNNNNGTC 2 cut(s) 2693, 2988
PshBI ATTAAT 1 cut(s) 2970
PsiI TTATAA 2 cut(s) 2069, 2342
Psp5II RGGWCCY 1 cut(s) 809
Psp6I CCWGG 5 cut(s) 66, 814, 1989, 2038, 2931
PspGI CCWGG 5 cut(s) 66, 814, 1989, 2038, 2931
PspN4I GGNNCC 6 cut(s) 65, 333, 810, 1086, 1707, 2315
PspPI GGNCC 5 cut(s) 63, 809, 1085, 2054, 2497
PspPPI RGGWCCY 1 cut(s) 809
PsrI GAACNNNNNNTAC 2 cut(s) 2849, 2881
PstI CTGCAG 1 cut(s) 2865
PsuI RGATCY 2 cut(s) 88, 2883
PsyI GACNNNGTC 1 cut(s) 2112
RsaI GTAC 8 cut(s) 475, 820, 1342, 2168, 2355, 2622, 2649, 2867
RsaNI GTAC 8 cut(s) 474, 819, 1341, 2167, 2354, 2621, 2648, 2866
RseI CAYNNNNRTG 2 cut(s) 777, 1482
SatI GCNGC 4 cut(s) 770, 1688, 1737, 2226
Sau3AI GATC 9 cut(s) 24, 88, 355, 1122, 1525, 1986, 2357, 2796, 2883
Sau96I GGNCC 5 cut(s) 63, 809, 1085, 2054, 2497
SchI GAGTC 5 cut(s) 874, 1008, 1511, 1766, 2190
ScrFI CCNGG 6 cut(s) 68, 351, 816, 1991, 2040, 2933
SduI GDGCHC 2 cut(s) 226, 895
SfaNI GCATC 8 cut(s) 364, 440, 509, 1658, 1679, 1948, 1984, 2494
SfcI CTRYAG 2 cut(s) 863, 2861
SinI GGWCC 4 cut(s) 63, 809, 2054, 2497
SmiMI CAYNNNNRTG 2 cut(s) 777, 1482
SmlI CTYRAG 3 cut(s) 1133, 1434, 2229
SmoI CTYRAG 3 cut(s) 1133, 1434, 2229
SseBI AGGCCT 1 cut(s) 2492
SsiI CCGC 4 cut(s) 2158, 2226, 2698, 2929
SspI AATATT 2 cut(s) 1606, 1659
SspMI CTAG 4 cut(s) 1674, 2427, 2637, 2903
StuI AGGCCT 1 cut(s) 2492
StyD4I CCNGG 6 cut(s) 66, 349, 814, 1989, 2038, 2931
StyI CCWWGG 5 cut(s) 1088, 1164, 2317, 2493, 2556
TaaI ACNGT 9 cut(s) 52, 228, 391, 473, 841, 1834, 2305, 2353, 2435
TaiI ACGT 2 cut(s) 1819, 2871
TaqI TCGA 4 cut(s) 220, 519, 1780, 2994
TaqII GACCGA 1 cut(s) 1205
TatI WGTACW 2 cut(s) 1340, 2166
TauI GCSGC 1 cut(s) 2228
TseI GCWGC 3 cut(s) 769, 1687, 1736
TspDTI ATGAA 8 cut(s) 477, 744, 884, 1827, 1869, 2374, 2469, 2553
Tth111I GACNNNGTC 1 cut(s) 2112
Van91I CCANNNNNTGG 3 cut(s) 1094, 1387, 2745
VpaK11BI GGWCC 4 cut(s) 63, 809, 2054, 2497
VspI ATTAAT 1 cut(s) 2970
XapI RAATTY 7 cut(s) 559, 579, 1041, 1963, 1969, 2381, 2807
XbaI TCTAGA 1 cut(s) 2902
XceI RCATGY 1 cut(s) 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 1095
XmiI GTMKAC 1 cut(s) 1371
XmnI GAANNNNTTC 6 cut(s) 77, 126, 659, 1623, 2464, 2675
XspI CTAG 4 cut(s) 1674, 2427, 2637, 2903
Zsp2I ATGCAT 1 cut(s) 1941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.