TPR and ankyrin repeat-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1107 |
| AccBSI | CCGCTC | 2 cut(s) | 2189, 2278 |
| AccI | GTMKAC | 2 cut(s) | 330, 1752 |
| AccII | CGCG | 1 cut(s) | 1401 |
| AciI | CCGC | 7 cut(s) | 1141, 1489, 1528, 1808, 2156, 2189, 2276 |
| AclI | AACGTT | 1 cut(s) | 72 |
| AclWI | GGATC | 2 cut(s) | 352, 977 |
| AcoI | YGGCCR | 1 cut(s) | 1761 |
| AcsI | RAATTY | 6 cut(s) | 204, 340, 670, 847, 1909, 2248 |
| AcuI | CTGAAG | 4 cut(s) | 773, 1911, 1917, 2004 |
| AcyI | GRCGYC | 3 cut(s) | 213, 2070, 2312 |
| AdeI | CACNNNGTG | 1 cut(s) | 2173 |
| AfaI | GTAC | 1 cut(s) | 404 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 697, 1364, 1591, 1774, 2056, 2168 |
| AjnI | CCWGG | 5 cut(s) | 1096, 1207, 1311, 2044, 2262 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1360, 1392 |
| Alw21I | GWGCWC | 3 cut(s) | 1017, 1669, 2273 |
| Alw26I | GTCTC | 3 cut(s) | 556, 850, 1943 |
| AlwI | GGATC | 2 cut(s) | 352, 977 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 790 |
| Ama87I | CYCGRG | 3 cut(s) | 986, 2243, 2281 |
| AoxI | GGCC | 7 cut(s) | 39, 1062, 1761, 2047, 2138, 2175, 2218 |
| ApeKI | GCWGC | 4 cut(s) | 581, 1961, 2062, 2292 |
| ApoI | RAATTY | 6 cut(s) | 204, 340, 670, 847, 1909, 2248 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 29, 61, 2220, 2252 |
| AseI | ATTAAT | 2 cut(s) | 260, 1515 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1064 |
| AspLEI | GCGC | 4 cut(s) | 92, 1236, 1924, 2107 |
| AspS9I | GGNCC | 5 cut(s) | 487, 1094, 2048, 2176, 2191 |
| AsuHPI | GGTGA | 4 cut(s) | 194, 262, 1197, 1705 |
| AvaI | CYCGRG | 3 cut(s) | 986, 2243, 2281 |
| AvaII | GGWCC | 3 cut(s) | 487, 1094, 2191 |
| BanII | GRGCYC | 3 cut(s) | 703, 1017, 1669 |
| BbsI | GAAGAC | 2 cut(s) | 1992, 2082 |
| Bbv12I | GWGCWC | 3 cut(s) | 1017, 1669, 2273 |
| BbvI | GCAGC | 4 cut(s) | 593, 1973, 2074, 2279 |
| BccI | CCATC | 4 cut(s) | 225, 1557, 1751, 2202 |
| BceAI | ACGGC | 3 cut(s) | 1776, 2185, 2311 |
| BciT130I | CCWGG | 5 cut(s) | 1098, 1209, 1313, 2046, 2264 |
| BclI | TGATCA | 2 cut(s) | 978, 2164 |
| BcoDI | GTCTC | 3 cut(s) | 556, 850, 1943 |
| BfaI | CTAG | 1 cut(s) | 300 |
| BfmI | CTRYAG | 3 cut(s) | 378, 782, 2293 |
| BfoI | RGCGCY | 1 cut(s) | 1237 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2137 |
| BglII | AGATCT | 1 cut(s) | 268 |
| BisI | GCNGC | 6 cut(s) | 582, 1808, 1962, 2063, 2276, 2293 |
| BlsI | GCNGC | 6 cut(s) | 583, 1809, 1963, 2064, 2277, 2294 |
| Bme1390I | CCNGG | 5 cut(s) | 1098, 1209, 1313, 2046, 2264 |
| Bme18I | GGWCC | 3 cut(s) | 487, 1094, 2191 |
| BmeT110I | CYCGRG | 3 cut(s) | 986, 2243, 2281 |
| BmgT120I | GGNCC | 5 cut(s) | 487, 1094, 2048, 2176, 2191 |
| BmiI | GGNNCC | 4 cut(s) | 489, 1116, 1369, 2325 |
| BmrFI | CCNGG | 5 cut(s) | 1098, 1209, 1313, 2046, 2264 |
| BmrI | ACTGGG | 1 cut(s) | 816 |
| BmsI | GCATC | 9 cut(s) | 142, 484, 630, 772, 877, 1594, 1729, 1850, 2036 |
| BmuI | ACTGGG | 1 cut(s) | 816 |
| BpiI | GAAGAC | 2 cut(s) | 1992, 2082 |
| BpmI | CTGGAG | 3 cut(s) | 381, 1201, 1683 |
| BpuEI | CTTGAG | 3 cut(s) | 188, 1655, 2326 |
| BsaBI | GATNNNNATC | 1 cut(s) | 564 |
| BsaHI | GRCGYC | 3 cut(s) | 213, 2070, 2312 |
| BsaI | GGTCTC | 1 cut(s) | 556 |
| BsaJI | CCNNGG | 4 cut(s) | 758, 1589, 2135, 2327 |
| BsaWI | WCCGGW | 1 cut(s) | 690 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 258, 288 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 697, 1364, 1591, 1774, 2056, 2168 |
| Bse1I | ACTGG | 5 cut(s) | 341, 489, 811, 1184, 1351 |
| Bse3DI | GCAATG | 1 cut(s) | 981 |
| Bse8I | GATNNNNATC | 1 cut(s) | 564 |
| BseBI | CCWGG | 5 cut(s) | 1098, 1209, 1313, 2046, 2264 |
| BseDI | CCNNGG | 4 cut(s) | 758, 1589, 2135, 2327 |
| BseGI | GGATG | 6 cut(s) | 157, 389, 1321, 1744, 1783, 2122 |
| BseJI | GATNNNNATC | 1 cut(s) | 564 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 697, 1364, 1591, 1774, 2056, 2168 |
| BseMI | GCAATG | 1 cut(s) | 981 |
| BseMII | CTCAG | 2 cut(s) | 599, 1651 |
| BseNI | ACTGG | 5 cut(s) | 341, 489, 811, 1184, 1351 |
| BseRI | GAGGAG | 5 cut(s) | 38, 1630, 1633, 2139, 2142 |
| BseXI | GCAGC | 4 cut(s) | 593, 1973, 2074, 2279 |
| BseYI | CCCAGC | 1 cut(s) | 1558 |
| BsgI | GTGCAG | 2 cut(s) | 715, 1860 |
| Bsh1236I | CGCG | 1 cut(s) | 1401 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1993 |
| BshFI | GGCC | 7 cut(s) | 41, 1064, 1763, 2049, 2140, 2177, 2220 |
| BsiEI | CGRYCG | 1 cut(s) | 1993 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1017, 1669, 2273 |
| BsiHKCI | CYCGRG | 3 cut(s) | 986, 2243, 2281 |
| BsiSI | CCGG | 2 cut(s) | 691, 2184 |
| BslFI | GGGAC | 1 cut(s) | 473 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 697, 1364, 1591, 1774, 2056, 2168 |
| BsmAI | GTCTC | 3 cut(s) | 556, 850, 1943 |
| BsmFI | GGGAC | 1 cut(s) | 473 |
| BsmI | GAATGC | 3 cut(s) | 280, 1049, 2205 |
| BsnI | GGCC | 7 cut(s) | 41, 1064, 1763, 2049, 2140, 2177, 2220 |
| Bso31I | GGTCTC | 1 cut(s) | 556 |
| BsoBI | CYCGRG | 3 cut(s) | 986, 2243, 2281 |
| Bsp1286I | GDGCHC | 4 cut(s) | 703, 1017, 1669, 2273 |
| Bsp143I | GATC | 6 cut(s) | 268, 357, 969, 978, 2032, 2164 |
| Bsp19I | CCATGG | 1 cut(s) | 1589 |
| Bsp68I | TCGCGA | 1 cut(s) | 1401 |
| BspACI | CCGC | 7 cut(s) | 1141, 1489, 1528, 1808, 2156, 2189, 2276 |
| BspANI | GGCC | 7 cut(s) | 41, 1064, 1763, 2049, 2140, 2177, 2220 |
| BspCNI | CTCAG | 2 cut(s) | 598, 1650 |
| BspFNI | CGCG | 1 cut(s) | 1401 |
| BspLI | GGNNCC | 4 cut(s) | 489, 1116, 1369, 2325 |
| BspMAI | CTGCAG | 1 cut(s) | 2297 |
| BspPI | GGATC | 2 cut(s) | 352, 977 |
| BspTNI | GGTCTC | 1 cut(s) | 556 |
| BsrBI | CCGCTC | 2 cut(s) | 2189, 2278 |
| BsrDI | GCAATG | 1 cut(s) | 981 |
| BsrI | ACTGG | 5 cut(s) | 341, 489, 811, 1184, 1351 |
| BssECI | CCNNGG | 4 cut(s) | 758, 1589, 2135, 2327 |
| BssMI | GATC | 6 cut(s) | 268, 357, 969, 978, 2032, 2164 |
| BssNI | GRCGYC | 3 cut(s) | 213, 2070, 2312 |
| BssT1I | CCWWGG | 3 cut(s) | 758, 1589, 2135 |
| Bst2UI | CCWGG | 5 cut(s) | 1098, 1209, 1313, 2046, 2264 |
| Bst4CI | ACNGT | 5 cut(s) | 1501, 1733, 1991, 2098, 2232 |
| BstACI | GRCGYC | 3 cut(s) | 213, 2070, 2312 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1883 |
| BstC8I | GCNNGC | 4 cut(s) | 1087, 1659, 2269, 2273 |
| BstDEI | CTNAG | 4 cut(s) | 585, 875, 1610, 1637 |
| BstDSI | CCRYGG | 2 cut(s) | 1589, 2327 |
| BstF5I | GGATG | 6 cut(s) | 157, 389, 1321, 1744, 1783, 2122 |
| BstFNI | CGCG | 1 cut(s) | 1401 |
| BstH2I | RGCGCY | 1 cut(s) | 1237 |
| BstHHI | GCGC | 4 cut(s) | 92, 1236, 1924, 2107 |
| BstKTI | GATC | 6 cut(s) | 271, 360, 972, 981, 2035, 2167 |
| BstMAI | GTCTC | 3 cut(s) | 556, 850, 1943 |
| BstMBI | GATC | 6 cut(s) | 268, 357, 969, 978, 2032, 2164 |
| BstMCI | CGRYCG | 1 cut(s) | 1993 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1883, 1961, 2137, 2292, 2298 |
| BstNI | CCWGG | 5 cut(s) | 1098, 1209, 1313, 2046, 2264 |
| BstSCI | CCNGG | 5 cut(s) | 1096, 1207, 1311, 2044, 2262 |
| BstSFI | CTRYAG | 3 cut(s) | 378, 782, 2293 |
| BstUI | CGCG | 1 cut(s) | 1401 |
| BstV1I | GCAGC | 4 cut(s) | 593, 1973, 2074, 2279 |
| BstV2I | GAAGAC | 2 cut(s) | 1992, 2082 |
| BstX2I | RGATCY | 2 cut(s) | 268, 357 |
| BstYI | RGATCY | 2 cut(s) | 268, 357 |
| BsuRI | GGCC | 7 cut(s) | 41, 1064, 1763, 2049, 2140, 2177, 2220 |
| BtgI | CCRYGG | 2 cut(s) | 1589, 2327 |
| BtsCI | GGATG | 6 cut(s) | 157, 389, 1321, 1744, 1783, 2122 |
| BtsI | GCAGTG | 2 cut(s) | 1979, 2045 |
| BtsIMutI | CAGTG | 4 cut(s) | 1575, 1979, 2045, 2237 |
| BtuMI | TCGCGA | 1 cut(s) | 1401 |
| Cac8I | GCNNGC | 4 cut(s) | 1087, 1659, 2269, 2273 |
| CaiI | CAGNNNCTG | 1 cut(s) | 790 |
| CfoI | GCGC | 4 cut(s) | 92, 1236, 1924, 2107 |
| Cfr13I | GGNCC | 5 cut(s) | 487, 1094, 2048, 2176, 2191 |
| CseI | GACGC | 3 cut(s) | 221, 2078, 2301 |
| CsiI | ACCWGGT | 1 cut(s) | 1207 |
| Csp6I | GTAC | 1 cut(s) | 403 |
| CviAII | CATG | 6 cut(s) | 1135, 1148, 1483, 1590, 1756, 2066 |
| CviQI | GTAC | 1 cut(s) | 403 |
| DdeI | CTNAG | 4 cut(s) | 585, 875, 1610, 1637 |
| DpnI | GATC | 6 cut(s) | 270, 359, 971, 980, 2034, 2166 |
| DpnII | GATC | 6 cut(s) | 268, 357, 969, 978, 2032, 2164 |
| DraI | TTTAAA | 1 cut(s) | 1644 |
| DraIII | CACNNNGTG | 1 cut(s) | 2173 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1107 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1107 |
| EaeI | YGGCCR | 1 cut(s) | 1761 |
| EciI | GGCGGA | 1 cut(s) | 2145 |
| Ecl136II | GAGCTC | 2 cut(s) | 1015, 1667 |
| Eco130I | CCWWGG | 3 cut(s) | 758, 1589, 2135 |
| Eco147I | AGGCCT | 2 cut(s) | 1064, 2220 |
| Eco24I | GRGCYC | 3 cut(s) | 703, 1017, 1669 |
| Eco31I | GGTCTC | 1 cut(s) | 556 |
| Eco47I | GGWCC | 3 cut(s) | 487, 1094, 2191 |
| Eco53kI | GAGCTC | 2 cut(s) | 1015, 1667 |
| Eco57I | CTGAAG | 4 cut(s) | 773, 1911, 1917, 2004 |
| Eco88I | CYCGRG | 3 cut(s) | 986, 2243, 2281 |
| EcoICRI | GAGCTC | 2 cut(s) | 1015, 1667 |
| EcoRI | GAATTC | 3 cut(s) | 670, 847, 1909 |
| EcoRII | CCWGG | 5 cut(s) | 1096, 1207, 1311, 2044, 2262 |
| EcoT14I | CCWWGG | 3 cut(s) | 758, 1589, 2135 |
| EcoT22I | ATGCAT | 1 cut(s) | 2029 |
| EcoT38I | GRGCYC | 3 cut(s) | 703, 1017, 1669 |
| ErhI | CCWWGG | 3 cut(s) | 758, 1589, 2135 |
| FaeI | CATG | 6 cut(s) | 1138, 1151, 1486, 1593, 1759, 2069 |
| FaqI | GGGAC | 1 cut(s) | 473 |
| FatI | CATG | 6 cut(s) | 1134, 1147, 1482, 1589, 1755, 2065 |
| FbaI | TGATCA | 2 cut(s) | 978, 2164 |
| FblI | GTMKAC | 2 cut(s) | 330, 1752 |
| Fnu4HI | GCNGC | 6 cut(s) | 582, 1808, 1962, 2063, 2276, 2293 |
| FokI | GGATG | 6 cut(s) | 164, 396, 1328, 1751, 1790, 2109 |
| FriOI | GRGCYC | 3 cut(s) | 703, 1017, 1669 |
| Fsp4HI | GCNGC | 6 cut(s) | 582, 1808, 1962, 2063, 2276, 2293 |
| FspBI | CTAG | 1 cut(s) | 300 |
| GlaI | GCGC | 4 cut(s) | 91, 1235, 1923, 2106 |
| GluI | GCNGC | 6 cut(s) | 582, 1808, 1962, 2063, 2276, 2293 |
| GsaI | CCCAGC | 1 cut(s) | 1562 |
| GsuI | CTGGAG | 3 cut(s) | 381, 1201, 1683 |
| HaeII | RGCGCY | 1 cut(s) | 1237 |
| HaeIII | GGCC | 7 cut(s) | 41, 1064, 1763, 2049, 2140, 2177, 2220 |
| HapII | CCGG | 2 cut(s) | 691, 2184 |
| HgaI | GACGC | 3 cut(s) | 221, 2078, 2301 |
| HhaI | GCGC | 4 cut(s) | 92, 1236, 1924, 2107 |
| Hin1I | GRCGYC | 3 cut(s) | 213, 2070, 2312 |
| Hin1II | CATG | 6 cut(s) | 1138, 1151, 1486, 1593, 1759, 2069 |
| Hin6I | GCGC | 4 cut(s) | 90, 1234, 1922, 2105 |
| HinP1I | GCGC | 4 cut(s) | 90, 1234, 1922, 2105 |
| HincII | GTYRAC | 2 cut(s) | 1177, 1753 |
| HindII | GTYRAC | 2 cut(s) | 1177, 1753 |
| HindIII | AAGCTT | 2 cut(s) | 638, 1037 |
| HpaII | CCGG | 2 cut(s) | 691, 2184 |
| HphI | GGTGA | 4 cut(s) | 194, 262, 1197, 1705 |
| Hpy166II | GTNNAC | 3 cut(s) | 331, 1177, 1753 |
| Hpy8I | GTNNAC | 3 cut(s) | 331, 1177, 1753 |
| Hpy99I | CGWCG | 1 cut(s) | 2317 |
| HpyCH4III | ACNGT | 5 cut(s) | 1501, 1733, 1991, 2098, 2232 |
| HpyCH4IV | ACGT | 2 cut(s) | 72, 1333 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1883, 1961, 2137, 2292, 2298 |
| HpyF3I | CTNAG | 4 cut(s) | 585, 875, 1610, 1637 |
| HpySE526I | ACGT | 2 cut(s) | 72, 1333 |
| Hsp92I | GRCGYC | 3 cut(s) | 213, 2070, 2312 |
| Hsp92II | CATG | 6 cut(s) | 1138, 1151, 1486, 1593, 1759, 2069 |
| HspAI | GCGC | 4 cut(s) | 90, 1234, 1922, 2105 |
| Ksp22I | TGATCA | 2 cut(s) | 978, 2164 |
| Kzo9I | GATC | 6 cut(s) | 268, 357, 969, 978, 2032, 2164 |
| LmnI | GCTCC | 8 cut(s) | 25, 943, 1012, 1231, 1664, 2059, 2186, 2323 |
| Lsp1109I | GCAGC | 4 cut(s) | 593, 1973, 2074, 2279 |
| LweI | GCATC | 9 cut(s) | 142, 484, 630, 772, 877, 1594, 1729, 1850, 2036 |
| MabI | ACCWGGT | 1 cut(s) | 1207 |
| MaeI | CTAG | 1 cut(s) | 300 |
| MaeII | ACGT | 2 cut(s) | 72, 1333 |
| MaeIII | GTNAC | 5 cut(s) | 793, 1143, 1342, 1476, 1495 |
| MalI | GATC | 6 cut(s) | 270, 359, 971, 980, 2034, 2166 |
| MbiI | CCGCTC | 2 cut(s) | 2189, 2278 |
| MboI | GATC | 6 cut(s) | 268, 357, 969, 978, 2032, 2164 |
| MflI | RGATCY | 2 cut(s) | 268, 357 |
| MhlI | GDGCHC | 4 cut(s) | 703, 1017, 1669, 2273 |
| MlyI | GAGTC | 3 cut(s) | 104, 671, 2235 |
| MmeI | TCCRAC | 4 cut(s) | 78, 1218, 2295, 2301 |
| Mph1103I | ATGCAT | 1 cut(s) | 2029 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1064 |
| MseI | TTAA | 5 cut(s) | 260, 1413, 1515, 1643, 1650 |
| MspA1I | CMGCKG | 1 cut(s) | 1964 |
| MspI | CCGG | 2 cut(s) | 691, 2184 |
| MspR9I | CCNGG | 5 cut(s) | 1098, 1209, 1313, 2046, 2264 |
| Mva1269I | GAATGC | 3 cut(s) | 280, 1049, 2205 |
| MvaI | CCWGG | 5 cut(s) | 1098, 1209, 1313, 2046, 2264 |
| MvnI | CGCG | 1 cut(s) | 1401 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1883, 1961, 2137, 2292, 2298 |
| NcoI | CCATGG | 1 cut(s) | 1589 |
| NdeII | GATC | 6 cut(s) | 268, 357, 969, 978, 2032, 2164 |
| NlaIII | CATG | 6 cut(s) | 1138, 1151, 1486, 1593, 1759, 2069 |
| NlaIV | GGNNCC | 4 cut(s) | 489, 1116, 1369, 2325 |
| NmeAIII | GCCGAG | 1 cut(s) | 118 |
| NmuCI | GTSAC | 2 cut(s) | 1342, 1476 |
| NruI | TCGCGA | 1 cut(s) | 1401 |
| NsiI | ATGCAT | 1 cut(s) | 2029 |
| PaeR7I | CTCGAG | 2 cut(s) | 2243, 2281 |
| PceI | AGGCCT | 2 cut(s) | 1064, 2220 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2279 |
| PctI | GAATGC | 3 cut(s) | 280, 1049, 2205 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1064 |
| PfeI | GAWTC | 9 cut(s) | 320, 374, 466, 740, 907, 1075, 1892, 1931, 2236 |
| PkrI | GCNGC | 6 cut(s) | 583, 1809, 1963, 2064, 2277, 2294 |
| PleI | GAGTC | 3 cut(s) | 103, 671, 2235 |
| PpsI | GAGTC | 3 cut(s) | 103, 671, 2235 |
| PshBI | ATTAAT | 2 cut(s) | 260, 1515 |
| Psp124BI | GAGCTC | 2 cut(s) | 1017, 1669 |
| Psp1406I | AACGTT | 1 cut(s) | 72 |
| Psp6I | CCWGG | 5 cut(s) | 1096, 1207, 1311, 2044, 2262 |
| PspFI | CCCAGC | 1 cut(s) | 1558 |
| PspGI | CCWGG | 5 cut(s) | 1096, 1207, 1311, 2044, 2262 |
| PspN4I | GGNNCC | 4 cut(s) | 489, 1116, 1369, 2325 |
| PspPI | GGNCC | 5 cut(s) | 487, 1094, 2048, 2176, 2191 |
| PstI | CTGCAG | 1 cut(s) | 2297 |
| PstNI | CAGNNNCTG | 1 cut(s) | 790 |
| PsuI | RGATCY | 2 cut(s) | 268, 357 |
| PvuII | CAGCTG | 1 cut(s) | 1964 |
| RruI | TCGCGA | 1 cut(s) | 1401 |
| RsaI | GTAC | 1 cut(s) | 404 |
| RsaNI | GTAC | 1 cut(s) | 403 |
| SacI | GAGCTC | 2 cut(s) | 1017, 1669 |
| SalI | GTCGAC | 1 cut(s) | 1751 |
| SaqAI | TTAA | 5 cut(s) | 260, 1413, 1515, 1643, 1650 |
| SatI | GCNGC | 6 cut(s) | 582, 1808, 1962, 2063, 2276, 2293 |
| Sau3AI | GATC | 6 cut(s) | 268, 357, 969, 978, 2032, 2164 |
| Sau96I | GGNCC | 5 cut(s) | 487, 1094, 2048, 2176, 2191 |
| SchI | GAGTC | 3 cut(s) | 104, 671, 2235 |
| ScrFI | CCNGG | 5 cut(s) | 1098, 1209, 1313, 2046, 2264 |
| SduI | GDGCHC | 4 cut(s) | 703, 1017, 1669, 2273 |
| SexAI | ACCWGGT | 1 cut(s) | 1207 |
| SfaNI | GCATC | 9 cut(s) | 142, 484, 630, 772, 877, 1594, 1729, 1850, 2036 |
| SfcI | CTRYAG | 3 cut(s) | 378, 782, 2293 |
| Sfr274I | CTCGAG | 2 cut(s) | 2243, 2281 |
| SinI | GGWCC | 3 cut(s) | 487, 1094, 2191 |
| SlaI | CTCGAG | 2 cut(s) | 2243, 2281 |
| SmlI | CTYRAG | 5 cut(s) | 167, 1670, 2243, 2281, 2305 |
| SmoI | CTYRAG | 5 cut(s) | 167, 1670, 2243, 2281, 2305 |
| SseBI | AGGCCT | 2 cut(s) | 1064, 2220 |
| SsiI | CCGC | 7 cut(s) | 1141, 1489, 1528, 1808, 2156, 2189, 2276 |
| SspMI | CTAG | 1 cut(s) | 300 |
| SstI | GAGCTC | 2 cut(s) | 1017, 1669 |
| StuI | AGGCCT | 2 cut(s) | 1064, 2220 |
| StyD4I | CCNGG | 5 cut(s) | 1096, 1207, 1311, 2044, 2262 |
| StyI | CCWWGG | 3 cut(s) | 758, 1589, 2135 |
| TaaI | ACNGT | 5 cut(s) | 1501, 1733, 1991, 2098, 2232 |
| TaiI | ACGT | 2 cut(s) | 75, 1336 |
| TaqI | TCGA | 9 cut(s) | 199, 680, 803, 935, 1752, 2211, 2239, 2244, 2282 |
| TatI | WGTACW | 1 cut(s) | 402 |
| TauI | GCSGC | 2 cut(s) | 1810, 2278 |
| TfiI | GAWTC | 9 cut(s) | 320, 374, 466, 740, 907, 1075, 1892, 1931, 2236 |
| Tru1I | TTAA | 5 cut(s) | 260, 1413, 1515, 1643, 1650 |
| Tru9I | TTAA | 5 cut(s) | 260, 1413, 1515, 1643, 1650 |
| TscAI | CASTG | 4 cut(s) | 1582, 1979, 2045, 2237 |
| TseFI | GTSAC | 2 cut(s) | 1342, 1476 |
| TseI | GCWGC | 4 cut(s) | 581, 1961, 2062, 2292 |
| Tsp45I | GTSAC | 2 cut(s) | 1342, 1476 |
| TspDTI | ATGAA | 4 cut(s) | 17, 554, 1057, 1332 |
| TspGWI | ACGGA | 1 cut(s) | 1025 |
| TspRI | CASTG | 4 cut(s) | 1582, 1979, 2045, 2237 |
| VpaK11BI | GGWCC | 3 cut(s) | 487, 1094, 2191 |
| VspI | ATTAAT | 2 cut(s) | 260, 1515 |
| XapI | RAATTY | 6 cut(s) | 204, 340, 670, 847, 1909, 2248 |
| XbaI | TCTAGA | 1 cut(s) | 299 |
| XhoI | CTCGAG | 2 cut(s) | 2243, 2281 |
| XmiI | GTMKAC | 2 cut(s) | 330, 1752 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1064 |
| XspI | CTAG | 1 cut(s) | 300 |
| Zsp2I | ATGCAT | 1 cut(s) | 2029 |