TPR and ankyrin repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF6469 | PF20073 | 66 - 207 | 6.4e-47 | Domain of unknown function (DUF6469) |
| AAA_11 | PF13086 | 245 - 622 | 1.4e-33 | AAA domain |
| AAA_19 | PF13245 | 265 - 618 | 1.1e-08 | AAA domain |
| AAA_12 | PF13087 | 630 - 826 | 6.6e-57 | AAA domain |
| UvrD-helicase | PF00580 | 1342 - 1432 | 1.6e-08 | UvrD/REP helicase N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 2090, 2363, 3824, 7086 |
| AarI | CACCTGC | 2 cut(s) | 4633, 5816 |
| AatII | GACGTC | 1 cut(s) | 2714 |
| Acc16I | TGCGCA | 1 cut(s) | 1586 |
| Acc36I | ACCTGC | 2 cut(s) | 4633, 5816 |
| AccB1I | GGYRCC | 1 cut(s) | 3405 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1109, 2072 |
| AccI | GTMKAC | 3 cut(s) | 2589, 4141, 7904 |
| AccII | CGCG | 1 cut(s) | 8008 |
| AclWI | GGATC | 8 cut(s) | 333, 2002, 2373, 3101, 3114, 3282, 5637, 6896 |
| AcoI | YGGCCR | 5 cut(s) | 2574, 3074, 3157, 3781, 5130 |
| AcuI | CTGAAG | 7 cut(s) | 945, 1227, 2771, 3495, 5253, 6216, 7086 |
| AcvI | CACGTG | 1 cut(s) | 5093 |
| AcyI | GRCGYC | 1 cut(s) | 2711 |
| AdeI | CACNNNGTG | 1 cut(s) | 5139 |
| AflII | CTTAAG | 2 cut(s) | 5801, 7505 |
| AflIII | ACRYGT | 2 cut(s) | 1813, 3541 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 3642, 3674, 4340, 4372, 5730, 5762 |
| AleI | CACNNNNGTG | 1 cut(s) | 7912 |
| Alw21I | GWGCWC | 7 cut(s) | 160, 196, 1231, 2052, 5609, 6593, 7811 |
| Alw44I | GTGCAC | 1 cut(s) | 192 |
| AlwI | GGATC | 8 cut(s) | 333, 2002, 2373, 3101, 3114, 3282, 5637, 6896 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2900, 3356 |
| Ama87I | CYCGRG | 2 cut(s) | 153, 6905 |
| ApaLI | GTGCAC | 1 cut(s) | 192 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 5939, 5971 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 84, 96, 2696, 3386, 7479, 7526 |
| AspA2I | CCTAGG | 1 cut(s) | 2774 |
| AspLEI | GCGC | 3 cut(s) | 1587, 2784, 8008 |
| AsuC2I | CCSGG | 2 cut(s) | 3097, 3989 |
| AsuII | TTCGAA | 1 cut(s) | 515 |
| AvaI | CYCGRG | 2 cut(s) | 153, 6905 |
| AvaII | GGWCC | 6 cut(s) | 33, 818, 1100, 2075, 2608, 5178 |
| AvrII | CCTAGG | 1 cut(s) | 2774 |
| BaeGI | GKGCMC | 2 cut(s) | 196, 904 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 4423, 4456, 7230, 7263 |
| BalI | TGGCCA | 4 cut(s) | 2576, 3076, 3783, 5132 |
| BamHI | GGATCC | 1 cut(s) | 3106 |
| BanI | GGYRCC | 1 cut(s) | 3405 |
| BanII | GRGCYC | 5 cut(s) | 160, 5609, 6593, 6622, 7811 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 2727, 2759, 2794, 2826, 4116, 4148 |
| BauI | CACGAG | 3 cut(s) | 1230, 6275, 7376 |
| BbrPI | CACGTG | 1 cut(s) | 5093 |
| BbsI | GAAGAC | 8 cut(s) | 48, 504, 789, 932, 2355, 3368, 6204, 7145 |
| Bbv12I | GWGCWC | 7 cut(s) | 160, 196, 1231, 2052, 5609, 6593, 7811 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 780, 814 |
| BciVI | GTATCC | 3 cut(s) | 144, 5504, 5568 |
| BclI | TGATCA | 3 cut(s) | 2557, 4168, 6171 |
| BcnI | CCSGG | 2 cut(s) | 3097, 3989 |
| BfrI | CTTAAG | 2 cut(s) | 5801, 7505 |
| BfuAI | ACCTGC | 2 cut(s) | 4633, 5816 |
| BfuI | GTATCC | 3 cut(s) | 144, 5504, 5568 |
| BglII | AGATCT | 2 cut(s) | 58, 4204 |
| BlnI | CCTAGG | 1 cut(s) | 2774 |
| BlpI | GCTNAGC | 1 cut(s) | 3983 |
| BmcAI | AGTACT | 4 cut(s) | 116, 2175, 2736, 4669 |
| Bme18I | GGWCC | 6 cut(s) | 33, 818, 1100, 2075, 2608, 5178 |
| BmeT110I | CYCGRG | 2 cut(s) | 153, 6905 |
| BmiI | GGNNCC | 9 cut(s) | 35, 819, 1728, 2336, 3108, 3407, 3872, 4319, 7251 |
| BmrI | ACTGGG | 3 cut(s) | 573, 759, 3366 |
| BmuI | ACTGGG | 3 cut(s) | 573, 759, 3366 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3368 |
| BpiI | GAAGAC | 8 cut(s) | 48, 504, 789, 932, 2355, 3368, 6204, 7145 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 5453, 5485, 6604, 6636, 6667, 6699 |
| BpmI | CTGGAG | 6 cut(s) | 2788, 2975, 3005, 4593, 7117, 7770 |
| Bpu10I | CCTNAGC | 2 cut(s) | 660, 3516 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3983 |
| Bpu14I | TTCGAA | 1 cut(s) | 515 |
| BpuEI | CTTGAG | 8 cut(s) | 1857, 2235, 3065, 4130, 4760, 6669, 7550, 7842 |
| BpuMI | CCSGG | 2 cut(s) | 3097, 3989 |
| Bsa29I | ATCGAT | 2 cut(s) | 5517, 7794 |
| BsaAI | YACGTR | 1 cut(s) | 5093 |
| BsaHI | GRCGYC | 1 cut(s) | 2711 |
| BsaI | GGTCTC | 2 cut(s) | 2764, 6475 |
| BsaWI | WCCGGW | 1 cut(s) | 4555 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 692, 722, 5077, 5107, 5695, 5725 |
| Bse3DI | GCAATG | 9 cut(s) | 304, 1120, 1192, 1328, 1870, 2791, 2868, 3454, 6900 |
| BseCI | ATCGAT | 2 cut(s) | 5517, 7794 |
| BseMI | GCAATG | 9 cut(s) | 304, 1120, 1192, 1328, 1870, 2791, 2868, 3454, 6900 |
| BseRI | GAGGAG | 9 cut(s) | 2060, 2126, 3638, 4985, 5093, 5577, 5580, 5716, 7531 |
| BseSI | GKGCMC | 2 cut(s) | 196, 904 |
| BseYI | CCCAGC | 2 cut(s) | 380, 7453 |
| BsgI | GTGCAG | 3 cut(s) | 1743, 3440, 4656 |
| Bsh1236I | CGCG | 1 cut(s) | 8008 |
| BshNI | GGYRCC | 1 cut(s) | 3405 |
| BshVI | ATCGAT | 2 cut(s) | 5517, 7794 |
| BsiHKAI | GWGCWC | 7 cut(s) | 160, 196, 1231, 2052, 5609, 6593, 7811 |
| BsiHKCI | CYCGRG | 2 cut(s) | 153, 6905 |
| BsiSI | CCGG | 4 cut(s) | 3097, 3160, 3988, 4556 |
| BslFI | GGGAC | 3 cut(s) | 19, 841, 2954 |
| BsmBI | CGTCTC | 1 cut(s) | 11 |
| BsmFI | GGGAC | 3 cut(s) | 19, 841, 2954 |
| Bso31I | GGTCTC | 2 cut(s) | 2764, 6475 |
| BsoBI | CYCGRG | 2 cut(s) | 153, 6905 |
| Bsp119I | TTCGAA | 1 cut(s) | 515 |
| Bsp1286I | GDGCHC | 9 cut(s) | 160, 196, 904, 1231, 2052, 5609, 6593, 6622, 7811 |
| Bsp1407I | TGTACA | 2 cut(s) | 603, 4761 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3983 |
| Bsp19I | CCATGG | 2 cut(s) | 6971, 7484 |
| BspDI | ATCGAT | 2 cut(s) | 5517, 7794 |
| BspFNI | CGCG | 1 cut(s) | 8008 |
| BspHI | TCATGA | 2 cut(s) | 1554, 3661 |
| BspLI | GGNNCC | 9 cut(s) | 35, 819, 1728, 2336, 3108, 3407, 3872, 4319, 7251 |
| BspMAI | CTGCAG | 2 cut(s) | 5431, 6705 |
| BspMI | ACCTGC | 2 cut(s) | 4633, 5816 |
| BspPI | GGATC | 8 cut(s) | 333, 2002, 2373, 3101, 3114, 3282, 5637, 6896 |
| BspQI | GCTCTTC | 2 cut(s) | 2815, 7799 |
| BspT104I | TTCGAA | 1 cut(s) | 515 |
| BspT107I | GGYRCC | 1 cut(s) | 3405 |
| BspTI | CTTAAG | 2 cut(s) | 5801, 7505 |
| BspTNI | GGTCTC | 2 cut(s) | 2764, 6475 |
| BsrDI | GCAATG | 9 cut(s) | 304, 1120, 1192, 1328, 1870, 2791, 2868, 3454, 6900 |
| BsrGI | TGTACA | 2 cut(s) | 603, 4761 |
| BssNI | GRCGYC | 1 cut(s) | 2711 |
| BssSI | CACGAG | 3 cut(s) | 1230, 6275, 7376 |
| BssT1I | CCWWGG | 6 cut(s) | 2577, 2774, 6693, 6971, 7484, 7668 |
| Bst2BI | CACGAG | 3 cut(s) | 1230, 6275, 7376 |
| BstACI | GRCGYC | 1 cut(s) | 2711 |
| BstAFI | CTTAAG | 2 cut(s) | 5801, 7505 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 200 |
| BstAUI | TGTACA | 2 cut(s) | 603, 4761 |
| BstBAI | YACGTR | 1 cut(s) | 5093 |
| BstBI | TTCGAA | 1 cut(s) | 515 |
| BstDSI | CCRYGG | 2 cut(s) | 6971, 7484 |
| BstEII | GGTNACC | 2 cut(s) | 1067, 1922 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 828, 3823 |
| BstFNI | CGCG | 1 cut(s) | 8008 |
| BstHHI | GCGC | 3 cut(s) | 1587, 2784, 8008 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3368 |
| BstPI | GGTNACC | 2 cut(s) | 1067, 1922 |
| BstSLI | GKGCMC | 2 cut(s) | 196, 904 |
| BstUI | CGCG | 1 cut(s) | 8008 |
| BstV2I | GAAGAC | 8 cut(s) | 48, 504, 789, 932, 2355, 3368, 6204, 7145 |
| BstX2I | RGATCY | 7 cut(s) | 58, 325, 2378, 3106, 3274, 4204, 5642 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 119, 3072, 6458 |
| BstYI | RGATCY | 7 cut(s) | 58, 325, 2378, 3106, 3274, 4204, 5642 |
| Bsu15I | ATCGAT | 2 cut(s) | 5517, 7794 |
| BsuI | GTATCC | 3 cut(s) | 144, 5504, 5568 |
| BsuTUI | ATCGAT | 2 cut(s) | 5517, 7794 |
| BtgI | CCRYGG | 2 cut(s) | 6971, 7484 |
| BtgZI | GCGATG | 1 cut(s) | 3777 |
| BtsI | GCAGTG | 3 cut(s) | 1686, 2898, 6698 |
| BveI | ACCTGC | 2 cut(s) | 4633, 5816 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2900, 3356 |
| CciI | TCATGA | 2 cut(s) | 1554, 3661 |
| CfoI | GCGC | 3 cut(s) | 1587, 2784, 8008 |
| ClaI | ATCGAT | 2 cut(s) | 5517, 7794 |
| CseI | GACGC | 3 cut(s) | 2024, 5285, 7139 |
| CsiI | ACCWGGT | 3 cut(s) | 6216, 7123, 7723 |
| DraI | TTTAAA | 8 cut(s) | 220, 502, 2308, 3790, 4521, 6348, 7074, 7815 |
| DraIII | CACNNNGTG | 1 cut(s) | 5139 |
| EaeI | YGGCCR | 5 cut(s) | 2574, 3074, 3157, 3781, 5130 |
| EciI | GGCGGA | 1 cut(s) | 7528 |
| Ecl136II | GAGCTC | 4 cut(s) | 158, 5607, 6591, 7809 |
| Eco130I | CCWWGG | 6 cut(s) | 2577, 2774, 6693, 6971, 7484, 7668 |
| Eco147I | AGGCCT | 4 cut(s) | 1488, 3818, 6682, 7361 |
| Eco24I | GRGCYC | 5 cut(s) | 160, 5609, 6593, 6622, 7811 |
| Eco31I | GGTCTC | 2 cut(s) | 2764, 6475 |
| Eco32I | GATATC | 4 cut(s) | 2962, 3646, 6207, 7792 |
| Eco47I | GGWCC | 6 cut(s) | 33, 818, 1100, 2075, 2608, 5178 |
| Eco53kI | GAGCTC | 4 cut(s) | 158, 5607, 6591, 7809 |
| Eco57I | CTGAAG | 7 cut(s) | 945, 1227, 2771, 3495, 5253, 6216, 7086 |
| Eco72I | CACGTG | 1 cut(s) | 5093 |
| Eco88I | CYCGRG | 2 cut(s) | 153, 6905 |
| Eco91I | GGTNACC | 2 cut(s) | 1067, 1922 |
| EcoICRI | GAGCTC | 4 cut(s) | 158, 5607, 6591, 7809 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 828, 3823 |
| EcoO109I | RGGNCCY | 2 cut(s) | 818, 4735 |
| EcoO65I | GGTNACC | 2 cut(s) | 1067, 1922 |
| EcoRI | GAATTC | 4 cut(s) | 2203, 3175, 5831, 6658 |
| EcoRV | GATATC | 4 cut(s) | 2962, 3646, 6207, 7792 |
| EcoT14I | CCWWGG | 6 cut(s) | 2577, 2774, 6693, 6971, 7484, 7668 |
| EcoT22I | ATGCAT | 3 cut(s) | 1962, 3769, 5853 |
| EcoT38I | GRGCYC | 5 cut(s) | 160, 5609, 6593, 6622, 7811 |
| ErhI | CCWWGG | 6 cut(s) | 2577, 2774, 6693, 6971, 7484, 7668 |
| Esp3I | CGTCTC | 1 cut(s) | 11 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 7254, 7286 |
| FaqI | GGGAC | 3 cut(s) | 19, 841, 2954 |
| FauI | CCCGC | 1 cut(s) | 7588 |
| FauNDI | CATATG | 3 cut(s) | 235, 1368, 4239 |
| FbaI | TGATCA | 3 cut(s) | 2557, 4168, 6171 |
| FblI | GTMKAC | 3 cut(s) | 2589, 4141, 7904 |
| FriOI | GRGCYC | 5 cut(s) | 160, 5609, 6593, 6622, 7811 |
| FspI | TGCGCA | 1 cut(s) | 1586 |
| GlaI | GCGC | 3 cut(s) | 1586, 2783, 8007 |
| GsaI | CCCAGC | 2 cut(s) | 384, 7457 |
| GsuI | CTGGAG | 6 cut(s) | 2788, 2975, 3005, 4593, 7117, 7770 |
| HapII | CCGG | 4 cut(s) | 3097, 3160, 3988, 4556 |
| HgaI | GACGC | 3 cut(s) | 2024, 5285, 7139 |
| HhaI | GCGC | 3 cut(s) | 1587, 2784, 8008 |
| Hin1I | GRCGYC | 1 cut(s) | 2711 |
| Hin6I | GCGC | 3 cut(s) | 1585, 2782, 8006 |
| HinP1I | GCGC | 3 cut(s) | 1585, 2782, 8006 |
| HincII | GTYRAC | 5 cut(s) | 1194, 1782, 2329, 4142, 7648 |
| HindII | GTYRAC | 5 cut(s) | 1194, 1782, 2329, 4142, 7648 |
| HindIII | AAGCTT | 5 cut(s) | 1894, 2753, 6557, 6941, 7068 |
| HpaII | CCGG | 4 cut(s) | 3097, 3160, 3988, 4556 |
| Hpy99I | CGWCG | 3 cut(s) | 106, 1969, 4143 |
| HpyCH4IV | ACGT | 6 cut(s) | 292, 2592, 2711, 4138, 5092, 6396 |
| HpySE526I | ACGT | 6 cut(s) | 292, 2592, 2711, 4138, 5092, 6396 |
| Hsp92I | GRCGYC | 1 cut(s) | 2711 |
| HspAI | GCGC | 3 cut(s) | 1585, 2782, 8006 |
| Ksp22I | TGATCA | 3 cut(s) | 2557, 4168, 6171 |
| LguI | GCTCTTC | 2 cut(s) | 2815, 7799 |
| LmnI | GCTCC | 8 cut(s) | 1726, 2023, 2047, 2955, 3956, 4558, 7147, 7461 |
| MabI | ACCWGGT | 3 cut(s) | 6216, 7123, 7723 |
| MaeII | ACGT | 6 cut(s) | 292, 2592, 2711, 4138, 5092, 6396 |
| MfeI | CAATTG | 4 cut(s) | 1841, 2612, 4293, 4509 |
| MflI | RGATCY | 7 cut(s) | 58, 325, 2378, 3106, 3274, 4204, 5642 |
| MhlI | GDGCHC | 9 cut(s) | 160, 196, 904, 1231, 2052, 5609, 6593, 6622, 7811 |
| MlsI | TGGCCA | 4 cut(s) | 2576, 3076, 3783, 5132 |
| MluNI | TGGCCA | 4 cut(s) | 2576, 3076, 3783, 5132 |
| Mox20I | TGGCCA | 4 cut(s) | 2576, 3076, 3783, 5132 |
| Mph1103I | ATGCAT | 3 cut(s) | 1962, 3769, 5853 |
| MroXI | GAANNNNTTC | 6 cut(s) | 84, 96, 2696, 3386, 7479, 7526 |
| MscI | TGGCCA | 4 cut(s) | 2576, 3076, 3783, 5132 |
| MslI | CAYNNNNRTG | 2 cut(s) | 786, 7912 |
| Msp20I | TGGCCA | 4 cut(s) | 2576, 3076, 3783, 5132 |
| MspA1I | CMGCKG | 2 cut(s) | 3587, 6500 |
| MspCI | CTTAAG | 2 cut(s) | 5801, 7505 |
| MspI | CCGG | 4 cut(s) | 3097, 3160, 3988, 4556 |
| MssI | GTTTAAAC | 1 cut(s) | 6348 |
| MunI | CAATTG | 4 cut(s) | 1841, 2612, 4293, 4509 |
| MvnI | CGCG | 1 cut(s) | 8008 |
| NciI | CCSGG | 2 cut(s) | 3097, 3989 |
| NcoI | CCATGG | 2 cut(s) | 6971, 7484 |
| NdeI | CATATG | 3 cut(s) | 235, 1368, 4239 |
| NlaIV | GGNNCC | 9 cut(s) | 35, 819, 1728, 2336, 3108, 3407, 3872, 4319, 7251 |
| NmeAIII | GCCGAG | 2 cut(s) | 4043, 7916 |
| NmuCI | GTSAC | 9 cut(s) | 406, 952, 1067, 1922, 2026, 3115, 3143, 3578, 5156 |
| NsbI | TGCGCA | 1 cut(s) | 1586 |
| NsiI | ATGCAT | 3 cut(s) | 1962, 3769, 5853 |
| NspV | TTCGAA | 1 cut(s) | 515 |
| OliI | CACNNNNGTG | 1 cut(s) | 7912 |
| PaeI | GCATGC | 3 cut(s) | 4706, 5537, 6297 |
| PaeR7I | CTCGAG | 1 cut(s) | 153 |
| PagI | TCATGA | 2 cut(s) | 1554, 3661 |
| PaqCI | CACCTGC | 2 cut(s) | 4633, 5816 |
| PceI | AGGCCT | 4 cut(s) | 1488, 3818, 6682, 7361 |
| PciI | ACATGT | 2 cut(s) | 1813, 3541 |
| PciSI | GCTCTTC | 2 cut(s) | 2815, 7799 |
| PdmI | GAANNNNTTC | 6 cut(s) | 84, 96, 2696, 3386, 7479, 7526 |
| PflFI | GACNNNGTC | 1 cut(s) | 2133 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1109, 2072 |
| PfoI | TCCNGGA | 2 cut(s) | 2010, 2952 |
| PmaCI | CACGTG | 1 cut(s) | 5093 |
| PmeI | GTTTAAAC | 1 cut(s) | 6348 |
| PmlI | CACGTG | 1 cut(s) | 5093 |
| Ppu21I | YACGTR | 1 cut(s) | 5093 |
| PpuMI | RGGWCCY | 1 cut(s) | 818 |
| PscI | ACATGT | 2 cut(s) | 1813, 3541 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3368 |
| PsiI | TTATAA | 4 cut(s) | 2090, 2363, 3824, 7086 |
| Psp124BI | GAGCTC | 4 cut(s) | 160, 5609, 6593, 7811 |
| Psp5II | RGGWCCY | 1 cut(s) | 818 |
| PspCI | CACGTG | 1 cut(s) | 5093 |
| PspEI | GGTNACC | 2 cut(s) | 1067, 1922 |
| PspFI | CCCAGC | 2 cut(s) | 380, 7453 |
| PspN4I | GGNNCC | 9 cut(s) | 35, 819, 1728, 2336, 3108, 3407, 3872, 4319, 7251 |
| PspPPI | RGGWCCY | 1 cut(s) | 818 |
| PspXI | VCTCGAGB | 1 cut(s) | 153 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4818, 4850 |
| PstI | CTGCAG | 2 cut(s) | 5431, 6705 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2900, 3356 |
| PsuI | RGATCY | 7 cut(s) | 58, 325, 2378, 3106, 3274, 4204, 5642 |
| PsyI | GACNNNGTC | 1 cut(s) | 2133 |
| PvuII | CAGCTG | 2 cut(s) | 3587, 6500 |
| RseI | CAYNNNNRTG | 2 cut(s) | 786, 7912 |
| SacI | GAGCTC | 4 cut(s) | 160, 5609, 6593, 7811 |
| SalI | GTCGAC | 1 cut(s) | 4140 |
| SapI | GCTCTTC | 2 cut(s) | 2815, 7799 |
| ScaI | AGTACT | 4 cut(s) | 116, 2175, 2736, 4669 |
| SduI | GDGCHC | 9 cut(s) | 160, 196, 904, 1231, 2052, 5609, 6593, 6622, 7811 |
| SexAI | ACCWGGT | 3 cut(s) | 6216, 7123, 7723 |
| Sfr274I | CTCGAG | 1 cut(s) | 153 |
| SfuI | TTCGAA | 1 cut(s) | 515 |
| SinI | GGWCC | 6 cut(s) | 33, 818, 1100, 2075, 2608, 5178 |
| SlaI | CTCGAG | 1 cut(s) | 153 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 786, 7912 |
| SphI | GCATGC | 3 cut(s) | 4706, 5537, 6297 |
| SseBI | AGGCCT | 4 cut(s) | 1488, 3818, 6682, 7361 |
| SspI | AATATT | 7 cut(s) | 978, 1301, 2416, 2928, 4602, 5271, 6512 |
| SstI | GAGCTC | 4 cut(s) | 160, 5609, 6593, 7811 |
| StuI | AGGCCT | 4 cut(s) | 1488, 3818, 6682, 7361 |
| StyI | CCWWGG | 6 cut(s) | 2577, 2774, 6693, 6971, 7484, 7668 |
| TaiI | ACGT | 6 cut(s) | 295, 2595, 2714, 4141, 5095, 6399 |
| TauI | GCSGC | 1 cut(s) | 781 |
| TseFI | GTSAC | 9 cut(s) | 406, 952, 1067, 1922, 2026, 3115, 3143, 3578, 5156 |
| Tsp45I | GTSAC | 9 cut(s) | 406, 952, 1067, 1922, 2026, 3115, 3143, 3578, 5156 |
| TspGWI | ACGGA | 4 cut(s) | 90, 1650, 1953, 4427 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2133 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1109, 2072 |
| Vha464I | CTTAAG | 2 cut(s) | 5801, 7505 |
| VneI | GTGCAC | 1 cut(s) | 192 |
| VpaK11BI | GGWCC | 6 cut(s) | 33, 818, 1100, 2075, 2608, 5178 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 828, 3823 |
| XbaI | TCTAGA | 1 cut(s) | 5599 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1110, 6232 |
| XhoI | CTCGAG | 1 cut(s) | 153 |
| XmaJI | CCTAGG | 1 cut(s) | 2774 |
| XmiI | GTMKAC | 3 cut(s) | 2589, 4141, 7904 |
| XmnI | GAANNNNTTC | 6 cut(s) | 84, 96, 2696, 3386, 7479, 7526 |
| ZraI | GACGTC | 1 cut(s) | 2712 |
| ZrmI | AGTACT | 4 cut(s) | 116, 2175, 2736, 4669 |
| Zsp2I | ATGCAT | 3 cut(s) | 1962, 3769, 5853 |