TPR and ankyrin repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UvrD-helicase | PF00580 | 466 - 554 | 8.1e-07 | UvrD/REP helicase N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1190 |
| AarI | CACCTGC | 1 cut(s) | 2510 |
| Acc36I | ACCTGC | 3 cut(s) | 1999, 2510, 3179 |
| AccB1I | GGYRCC | 1 cut(s) | 768 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 155, 667 |
| AccII | CGCG | 1 cut(s) | 2753 |
| AciI | CCGC | 4 cut(s) | 1238, 2751, 2753, 3052 |
| AclWI | GGATC | 4 cut(s) | 645, 1375, 1542, 3000 |
| AcoI | YGGCCR | 3 cut(s) | 1235, 2289, 2496 |
| AcuI | CTGAAG | 6 cut(s) | 30, 1959, 2294, 2619, 2762, 3296 |
| AcvI | CACGTG | 1 cut(s) | 2459 |
| AdeI | CACNNNGTG | 1 cut(s) | 2505 |
| AfaI | GTAC | 6 cut(s) | 15, 403, 1368, 1807, 2876, 3231 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 155, 667, 1774, 2167, 3184 |
| AflIII | ACRYGT | 2 cut(s) | 512, 904 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 267 |
| AhlI | ACTAGT | 1 cut(s) | 797 |
| AjnI | CCWGG | 3 cut(s) | 1400, 2219, 2230 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1005, 1037, 1706, 1738 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2578, 2610 |
| Alw21I | GWGCWC | 2 cut(s) | 2038, 2977 |
| Alw26I | GTCTC | 6 cut(s) | 125, 342, 1777, 2834, 3246, 3319 |
| Alw44I | GTGCAC | 1 cut(s) | 2973 |
| AlwI | GGATC | 4 cut(s) | 645, 1375, 1542, 3000 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 719, 836, 2663 |
| AoxI | GGCC | 8 cut(s) | 1235, 1765, 2101, 2289, 2496, 2557, 3269, 3297 |
| ApaLI | GTGCAC | 1 cut(s) | 2973 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 51, 943, 1782 |
| AspLEI | GCGC | 1 cut(s) | 3316 |
| AspS9I | GGNCC | 5 cut(s) | 146, 658, 2020, 2101, 3298 |
| AsuHPI | GGTGA | 7 cut(s) | 363, 518, 1493, 1655, 2139, 2534, 3164 |
| AvaII | GGWCC | 3 cut(s) | 146, 658, 2020 |
| AxyI | CCTNAGG | 2 cut(s) | 265, 2442 |
| BaeGI | GKGCMC | 1 cut(s) | 2977 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1789, 1822 |
| BalI | TGGCCA | 1 cut(s) | 2498 |
| BanI | GGYRCC | 1 cut(s) | 768 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1482, 1514 |
| BauI | CACGAG | 1 cut(s) | 2302 |
| BbrPI | CACGTG | 1 cut(s) | 2459 |
| Bbv12I | GWGCWC | 2 cut(s) | 2038, 2977 |
| BccI | CCATC | 8 cut(s) | 512, 902, 1082, 1334, 1450, 1512, 1619, 1808 |
| BceAI | ACGGC | 1 cut(s) | 2276 |
| BciT130I | CCWGG | 3 cut(s) | 1402, 2221, 2232 |
| BciVI | GTATCC | 1 cut(s) | 782 |
| BcoDI | GTCTC | 6 cut(s) | 125, 342, 1777, 2834, 3246, 3319 |
| BcuI | ACTAGT | 1 cut(s) | 797 |
| BfaI | CTAG | 6 cut(s) | 110, 798, 2195, 2709, 2768, 2925 |
| BfmI | CTRYAG | 2 cut(s) | 1326, 2646 |
| BfoI | RGCGCY | 1 cut(s) | 3317 |
| BfuAI | ACCTGC | 3 cut(s) | 1999, 2510, 3179 |
| BfuI | GTATCC | 1 cut(s) | 782 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3305 |
| BglII | AGATCT | 1 cut(s) | 1570 |
| Bme1390I | CCNGG | 3 cut(s) | 1402, 2221, 2232 |
| Bme18I | GGWCC | 3 cut(s) | 146, 658, 2020 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 267 |
| BmgT120I | GGNCC | 5 cut(s) | 146, 658, 2020, 2101, 3298 |
| BmiI | GGNNCC | 2 cut(s) | 255, 770 |
| BmrFI | CCNGG | 3 cut(s) | 1402, 2221, 2232 |
| BmrI | ACTGGG | 4 cut(s) | 729, 1989, 2542, 2873 |
| BmsI | GCATC | 4 cut(s) | 377, 1117, 1261, 1503 |
| BmuI | ACTGGG | 4 cut(s) | 729, 1989, 2542, 2873 |
| BpmI | CTGGAG | 1 cut(s) | 181 |
| Bpu10I | CCTNAGC | 3 cut(s) | 142, 879, 2805 |
| BpuEI | CTTGAG | 3 cut(s) | 288, 1808, 2126 |
| BsaAI | YACGTR | 2 cut(s) | 2459, 3229 |
| BsaJI | CCNNGG | 4 cut(s) | 2219, 2220, 2751, 3178 |
| BsaWI | WCCGGW | 2 cut(s) | 1640, 1921 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 423, 453, 2438, 2468 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 155, 667, 1774, 2167, 3184 |
| Bse21I | CCTNAGG | 2 cut(s) | 265, 2442 |
| Bse3DI | GCAATG | 1 cut(s) | 166 |
| BseBI | CCWGG | 3 cut(s) | 1402, 2221, 2232 |
| BseDI | CCNNGG | 4 cut(s) | 2219, 2220, 2751, 3178 |
| BseGI | GGATG | 3 cut(s) | 994, 2122, 2407 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 155, 667, 1774, 2167, 3184 |
| BseMI | GCAATG | 1 cut(s) | 166 |
| BseRI | GAGGAG | 3 cut(s) | 329, 854, 2459 |
| BseSI | GKGCMC | 1 cut(s) | 2977 |
| BsgI | GTGCAG | 2 cut(s) | 1635, 2022 |
| Bsh1236I | CGCG | 1 cut(s) | 2753 |
| BshFI | GGCC | 8 cut(s) | 1237, 1767, 2103, 2291, 2498, 2559, 3271, 3299 |
| BshNI | GGYRCC | 1 cut(s) | 768 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2038, 2977 |
| BsiSI | CCGG | 2 cut(s) | 1641, 1922 |
| BslFI | GGGAC | 1 cut(s) | 3068 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 155, 667, 1774, 2167, 3184 |
| BsmAI | GTCTC | 6 cut(s) | 125, 342, 1777, 2834, 3246, 3319 |
| BsmBI | CGTCTC | 1 cut(s) | 125 |
| BsmFI | GGGAC | 1 cut(s) | 3068 |
| BsmI | GAATGC | 1 cut(s) | 2952 |
| BsnI | GGCC | 8 cut(s) | 1237, 1767, 2103, 2291, 2498, 2559, 3271, 3299 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2038, 2977 |
| Bsp1407I | TGTACA | 1 cut(s) | 1366 |
| Bsp143I | GATC | 9 cut(s) | 637, 1166, 1380, 1474, 1495, 1534, 1570, 2683, 3005 |
| BspACI | CCGC | 4 cut(s) | 1238, 2751, 2753, 3052 |
| BspANI | GGCC | 8 cut(s) | 1237, 1767, 2103, 2291, 2498, 2559, 3271, 3299 |
| BspFNI | CGCG | 1 cut(s) | 2753 |
| BspHI | TCATGA | 3 cut(s) | 1024, 2476, 3339 |
| BspLI | GGNNCC | 2 cut(s) | 255, 770 |
| BspMI | ACCTGC | 3 cut(s) | 1999, 2510, 3179 |
| BspPI | GGATC | 4 cut(s) | 645, 1375, 1542, 3000 |
| BspQI | GCTCTTC | 1 cut(s) | 2331 |
| BspT107I | GGYRCC | 1 cut(s) | 768 |
| BsrDI | GCAATG | 1 cut(s) | 166 |
| BsrGI | TGTACA | 1 cut(s) | 1366 |
| BssECI | CCNNGG | 4 cut(s) | 2219, 2220, 2751, 3178 |
| BssMI | GATC | 9 cut(s) | 637, 1166, 1380, 1474, 1495, 1534, 1570, 2683, 3005 |
| BssSI | CACGAG | 1 cut(s) | 2302 |
| BssT1I | CCWWGG | 1 cut(s) | 3178 |
| Bst2BI | CACGAG | 1 cut(s) | 2302 |
| Bst2UI | CCWGG | 3 cut(s) | 1402, 2221, 2232 |
| Bst4CI | ACNGT | 7 cut(s) | 18, 119, 733, 765, 871, 1374, 2213 |
| Bst6I | CTCTTC | 6 cut(s) | 93, 2331, 2595, 2738, 2898, 3059 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2573, 2663 |
| BstAUI | TGTACA | 1 cut(s) | 1366 |
| BstBAI | YACGTR | 2 cut(s) | 2459, 3229 |
| BstC8I | GCNNGC | 6 cut(s) | 132, 2070, 2434, 2557, 2898, 3269 |
| BstDSI | CCRYGG | 1 cut(s) | 2751 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3182 |
| BstF5I | GGATG | 3 cut(s) | 994, 2122, 2407 |
| BstFNI | CGCG | 1 cut(s) | 2753 |
| BstH2I | RGCGCY | 1 cut(s) | 3317 |
| BstHHI | GCGC | 1 cut(s) | 3316 |
| BstKTI | GATC | 9 cut(s) | 640, 1169, 1383, 1477, 1498, 1537, 1573, 2686, 3008 |
| BstMAI | GTCTC | 6 cut(s) | 125, 342, 1777, 2834, 3246, 3319 |
| BstMBI | GATC | 9 cut(s) | 637, 1166, 1380, 1474, 1495, 1534, 1570, 2683, 3005 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1331, 2392, 2573, 2663, 3137, 3264, 3305 |
| BstNI | CCWGG | 3 cut(s) | 1402, 2221, 2232 |
| BstNSI | RCATGY | 6 cut(s) | 516, 908, 933, 1338, 2072, 2900 |
| BstSCI | CCNGG | 3 cut(s) | 1400, 2219, 2230 |
| BstSFI | CTRYAG | 2 cut(s) | 1326, 2646 |
| BstSLI | GKGCMC | 1 cut(s) | 2977 |
| BstSNI | TACGTA | 1 cut(s) | 3229 |
| BstUI | CGCG | 1 cut(s) | 2753 |
| BstX2I | RGATCY | 4 cut(s) | 637, 1380, 1570, 3005 |
| BstYI | RGATCY | 4 cut(s) | 637, 1380, 1570, 3005 |
| Bsu36I | CCTNAGG | 2 cut(s) | 265, 2442 |
| BsuI | GTATCC | 1 cut(s) | 782 |
| BsuRI | GGCC | 8 cut(s) | 1237, 1767, 2103, 2291, 2498, 2559, 3271, 3299 |
| BtgI | CCRYGG | 1 cut(s) | 2751 |
| BtgZI | GCGATG | 1 cut(s) | 3121 |
| BtsCI | GGATG | 3 cut(s) | 994, 2122, 2407 |
| BtsI | GCAGTG | 3 cut(s) | 786, 1647, 2910 |
| BtsIMutI | CAGTG | 9 cut(s) | 729, 770, 786, 876, 1094, 1647, 2168, 2910, 3353 |
| BveI | ACCTGC | 3 cut(s) | 1999, 2510, 3179 |
| Cac8I | GCNNGC | 6 cut(s) | 132, 2070, 2434, 2557, 2898, 3269 |
| CaiI | CAGNNNCTG | 3 cut(s) | 719, 836, 2663 |
| CciI | TCATGA | 3 cut(s) | 1024, 2476, 3339 |
| CfoI | GCGC | 1 cut(s) | 3316 |
| Cfr13I | GGNCC | 5 cut(s) | 146, 658, 2020, 2101, 3298 |
| Cfr42I | CCGCGG | 1 cut(s) | 2754 |
| Csp6I | GTAC | 6 cut(s) | 14, 402, 1367, 1806, 2875, 3230 |
| CviQI | GTAC | 6 cut(s) | 14, 402, 1367, 1806, 2875, 3230 |
| DpnI | GATC | 9 cut(s) | 639, 1168, 1382, 1476, 1497, 1536, 1572, 2685, 3007 |
| DpnII | GATC | 9 cut(s) | 637, 1166, 1380, 1474, 1495, 1534, 1570, 2683, 3005 |
| DraI | TTTAAA | 1 cut(s) | 1600 |
| DraIII | CACNNNGTG | 1 cut(s) | 2505 |
| DriI | GACNNNNNGTC | 1 cut(s) | 267 |
| EaeI | YGGCCR | 3 cut(s) | 1235, 2289, 2496 |
| Eam1104I | CTCTTC | 6 cut(s) | 93, 2331, 2595, 2738, 2898, 3059 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 267 |
| EarI | CTCTTC | 6 cut(s) | 93, 2331, 2595, 2738, 2898, 3059 |
| Eco105I | TACGTA | 1 cut(s) | 3229 |
| Eco130I | CCWWGG | 1 cut(s) | 3178 |
| Eco32I | GATATC | 2 cut(s) | 1009, 2049 |
| Eco47I | GGWCC | 3 cut(s) | 146, 658, 2020 |
| Eco57I | CTGAAG | 6 cut(s) | 30, 1959, 2294, 2619, 2762, 3296 |
| Eco72I | CACGTG | 1 cut(s) | 2459 |
| Eco81I | CCTNAGG | 2 cut(s) | 265, 2442 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3182 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2101, 3298 |
| EcoRI | GAATTC | 2 cut(s) | 538, 1159 |
| EcoRII | CCWGG | 3 cut(s) | 1400, 2219, 2230 |
| EcoRV | GATATC | 2 cut(s) | 1009, 2049 |
| EcoT14I | CCWWGG | 1 cut(s) | 3178 |
| EcoT22I | ATGCAT | 2 cut(s) | 370, 1518 |
| ErhI | CCWWGG | 1 cut(s) | 3178 |
| Esp3I | CGTCTC | 1 cut(s) | 125 |
| FaqI | GGGAC | 1 cut(s) | 3068 |
| FauI | CCCGC | 1 cut(s) | 3045 |
| FauNDI | CATATG | 2 cut(s) | 1539, 1605 |
| FokI | GGATG | 3 cut(s) | 1001, 2129, 2414 |
| FspBI | CTAG | 6 cut(s) | 110, 798, 2195, 2709, 2768, 2925 |
| GlaI | GCGC | 1 cut(s) | 3315 |
| GsuI | CTGGAG | 1 cut(s) | 181 |
| HaeII | RGCGCY | 1 cut(s) | 3317 |
| HaeIII | GGCC | 8 cut(s) | 1237, 1767, 2103, 2291, 2498, 2559, 3271, 3299 |
| HapII | CCGG | 2 cut(s) | 1641, 1922 |
| HhaI | GCGC | 1 cut(s) | 3316 |
| Hin6I | GCGC | 1 cut(s) | 3314 |
| HinP1I | GCGC | 1 cut(s) | 3314 |
| HincII | GTYRAC | 2 cut(s) | 6, 240 |
| HindII | GTYRAC | 2 cut(s) | 6, 240 |
| HindIII | AAGCTT | 1 cut(s) | 3027 |
| HpaI | GTTAAC | 1 cut(s) | 240 |
| HpaII | CCGG | 2 cut(s) | 1641, 1922 |
| HphI | GGTGA | 7 cut(s) | 363, 518, 1493, 1655, 2139, 2534, 3164 |
| Hpy166II | GTNNAC | 6 cut(s) | 6, 240, 601, 1346, 2216, 2975 |
| Hpy8I | GTNNAC | 6 cut(s) | 6, 240, 601, 1346, 2216, 2975 |
| HpyAV | CCTTC | 7 cut(s) | 244, 689, 702, 706, 2160, 2535, 3045 |
| HpyCH4III | ACNGT | 7 cut(s) | 18, 119, 733, 765, 871, 1374, 2213 |
| HpyCH4IV | ACGT | 3 cut(s) | 2458, 2588, 3228 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1331, 2392, 2573, 2663, 3137, 3264, 3305 |
| HpySE526I | ACGT | 3 cut(s) | 2458, 2588, 3228 |
| HspAI | GCGC | 1 cut(s) | 3314 |
| KspAI | GTTAAC | 1 cut(s) | 240 |
| KspI | CCGCGG | 1 cut(s) | 2754 |
| Kzo9I | GATC | 9 cut(s) | 637, 1166, 1380, 1474, 1495, 1534, 1570, 2683, 3005 |
| LguI | GCTCTTC | 1 cut(s) | 2331 |
| LmnI | GCTCC | 3 cut(s) | 70, 1322, 1924 |
| LweI | GCATC | 4 cut(s) | 377, 1117, 1261, 1503 |
| MaeI | CTAG | 6 cut(s) | 110, 798, 2195, 2709, 2768, 2925 |
| MaeII | ACGT | 3 cut(s) | 2458, 2588, 3228 |
| MaeIII | GTNAC | 9 cut(s) | 296, 506, 527, 652, 865, 1643, 2293, 2454, 2522 |
| MalI | GATC | 9 cut(s) | 639, 1168, 1382, 1476, 1497, 1536, 1572, 2685, 3007 |
| MboI | GATC | 9 cut(s) | 637, 1166, 1380, 1474, 1495, 1534, 1570, 2683, 3005 |
| MfeI | CAATTG | 2 cut(s) | 1659, 2085 |
| MflI | RGATCY | 4 cut(s) | 637, 1380, 1570, 3005 |
| MhlI | GDGCHC | 2 cut(s) | 2038, 2977 |
| MlsI | TGGCCA | 1 cut(s) | 2498 |
| MluNI | TGGCCA | 1 cut(s) | 2498 |
| MlyI | GAGTC | 7 cut(s) | 69, 883, 1290, 1591, 1736, 1786, 2741 |
| MmeI | TCCRAC | 5 cut(s) | 685, 1704, 1972, 3051, 3078 |
| Mox20I | TGGCCA | 1 cut(s) | 2498 |
| Mph1103I | ATGCAT | 2 cut(s) | 370, 1518 |
| MroXI | GAANNNNTTC | 3 cut(s) | 51, 943, 1782 |
| MscI | TGGCCA | 1 cut(s) | 2498 |
| MslI | CAYNNNNRTG | 3 cut(s) | 452, 2915, 2985 |
| Msp20I | TGGCCA | 1 cut(s) | 2498 |
| MspA1I | CMGCKG | 3 cut(s) | 1172, 2555, 2753 |
| MspI | CCGG | 2 cut(s) | 1641, 1922 |
| MspR9I | CCNGG | 3 cut(s) | 1402, 2221, 2232 |
| MssI | GTTTAAAC | 1 cut(s) | 1600 |
| MunI | CAATTG | 2 cut(s) | 1659, 2085 |
| Mva1269I | GAATGC | 1 cut(s) | 2952 |
| MvaI | CCWGG | 3 cut(s) | 1402, 2221, 2232 |
| MvnI | CGCG | 1 cut(s) | 2753 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1331, 2392, 2573, 2663, 3137, 3264, 3305 |
| NdeI | CATATG | 2 cut(s) | 1539, 1605 |
| NdeII | GATC | 9 cut(s) | 637, 1166, 1380, 1474, 1495, 1534, 1570, 2683, 3005 |
| NlaIV | GGNNCC | 2 cut(s) | 255, 770 |
| NmeAIII | GCCGAG | 1 cut(s) | 160 |
| NmuCI | GTSAC | 5 cut(s) | 296, 506, 1643, 2454, 2522 |
| NsiI | ATGCAT | 2 cut(s) | 370, 1518 |
| NspI | RCATGY | 6 cut(s) | 516, 908, 933, 1338, 2072, 2900 |
| PaeI | GCATGC | 2 cut(s) | 2072, 2900 |
| PagI | TCATGA | 3 cut(s) | 1024, 2476, 3339 |
| PaqCI | CACCTGC | 1 cut(s) | 2510 |
| PasI | CCCWGGG | 1 cut(s) | 2220 |
| PciI | ACATGT | 2 cut(s) | 512, 904 |
| PciSI | GCTCTTC | 1 cut(s) | 2331 |
| PctI | GAATGC | 1 cut(s) | 2952 |
| PdmI | GAANNNNTTC | 3 cut(s) | 51, 943, 1782 |
| PfeI | GAWTC | 7 cut(s) | 1016, 1119, 1818, 1934, 2405, 2660, 3167 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 155, 667 |
| PleI | GAGTC | 7 cut(s) | 69, 882, 1289, 1590, 1735, 1786, 2740 |
| PmaCI | CACGTG | 1 cut(s) | 2459 |
| PmeI | GTTTAAAC | 1 cut(s) | 1600 |
| PmlI | CACGTG | 1 cut(s) | 2459 |
| PpsI | GAGTC | 7 cut(s) | 69, 882, 1289, 1590, 1735, 1786, 2740 |
| Ppu21I | YACGTR | 2 cut(s) | 2459, 3229 |
| PscI | ACATGT | 2 cut(s) | 512, 904 |
| PsiI | TTATAA | 1 cut(s) | 1190 |
| Psp6I | CCWGG | 3 cut(s) | 1400, 2219, 2230 |
| PspCI | CACGTG | 1 cut(s) | 2459 |
| PspGI | CCWGG | 3 cut(s) | 1400, 2219, 2230 |
| PspN4I | GGNNCC | 2 cut(s) | 255, 770 |
| PspPI | GGNCC | 5 cut(s) | 146, 658, 2020, 2101, 3298 |
| PstNI | CAGNNNCTG | 3 cut(s) | 719, 836, 2663 |
| PsuI | RGATCY | 4 cut(s) | 637, 1380, 1570, 3005 |
| PvuII | CAGCTG | 2 cut(s) | 1172, 2555 |
| RsaI | GTAC | 6 cut(s) | 15, 403, 1368, 1807, 2876, 3231 |
| RsaNI | GTAC | 6 cut(s) | 14, 402, 1367, 1806, 2875, 3230 |
| RseI | CAYNNNNRTG | 3 cut(s) | 452, 2915, 2985 |
| SacII | CCGCGG | 1 cut(s) | 2754 |
| SapI | GCTCTTC | 1 cut(s) | 2331 |
| Sau3AI | GATC | 9 cut(s) | 637, 1166, 1380, 1474, 1495, 1534, 1570, 2683, 3005 |
| Sau96I | GGNCC | 5 cut(s) | 146, 658, 2020, 2101, 3298 |
| SchI | GAGTC | 7 cut(s) | 69, 883, 1290, 1591, 1736, 1786, 2741 |
| ScrFI | CCNGG | 3 cut(s) | 1402, 2221, 2232 |
| SduI | GDGCHC | 2 cut(s) | 2038, 2977 |
| SfaNI | GCATC | 4 cut(s) | 377, 1117, 1261, 1503 |
| SfcI | CTRYAG | 2 cut(s) | 1326, 2646 |
| Sfr303I | CCGCGG | 1 cut(s) | 2754 |
| SgrBI | CCGCGG | 1 cut(s) | 2754 |
| SinI | GGWCC | 3 cut(s) | 146, 658, 2020 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 452, 2915, 2985 |
| SmlI | CTYRAG | 3 cut(s) | 303, 1823, 2105 |
| SmoI | CTYRAG | 3 cut(s) | 303, 1823, 2105 |
| SnaBI | TACGTA | 1 cut(s) | 3229 |
| SpeI | ACTAGT | 1 cut(s) | 797 |
| SphI | GCATGC | 2 cut(s) | 2072, 2900 |
| SsiI | CCGC | 4 cut(s) | 1238, 2751, 2753, 3052 |
| SspI | AATATT | 2 cut(s) | 2637, 3222 |
| SspMI | CTAG | 6 cut(s) | 110, 798, 2195, 2709, 2768, 2925 |
| StyD4I | CCNGG | 3 cut(s) | 1400, 2219, 2230 |
| StyI | CCWWGG | 1 cut(s) | 3178 |
| TaaI | ACNGT | 7 cut(s) | 18, 119, 733, 765, 871, 1374, 2213 |
| TaiI | ACGT | 3 cut(s) | 2461, 2591, 3231 |
| TaqI | TCGA | 6 cut(s) | 947, 1354, 1507, 2038, 2205, 2238 |
| TatI | WGTACW | 3 cut(s) | 13, 1366, 2874 |
| TauI | GCSGC | 2 cut(s) | 1240, 2753 |
| TfiI | GAWTC | 7 cut(s) | 1016, 1119, 1818, 1934, 2405, 2660, 3167 |
| TscAI | CASTG | 9 cut(s) | 736, 770, 786, 876, 1101, 1654, 2168, 2917, 3360 |
| TseFI | GTSAC | 5 cut(s) | 296, 506, 1643, 2454, 2522 |
| Tsp45I | GTSAC | 5 cut(s) | 296, 506, 1643, 2454, 2522 |
| TspGWI | ACGGA | 2 cut(s) | 671, 1171 |
| TspRI | CASTG | 9 cut(s) | 736, 770, 786, 876, 1101, 1654, 2168, 2917, 3360 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 155, 667 |
| VneI | GTGCAC | 1 cut(s) | 2973 |
| VpaK11BI | GGWCC | 3 cut(s) | 146, 658, 2020 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3182 |
| XbaI | TCTAGA | 1 cut(s) | 109 |
| XceI | RCATGY | 6 cut(s) | 516, 908, 933, 1338, 2072, 2900 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 156, 1310 |
| XmnI | GAANNNNTTC | 3 cut(s) | 51, 943, 1782 |
| XspI | CTAG | 6 cut(s) | 110, 798, 2195, 2709, 2768, 2925 |
| Zsp2I | ATGCAT | 2 cut(s) | 370, 1518 |