Rh4CG454800

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000223
Physical Location & Seq
Forward (+)
68785631 .. 68786299
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG454800.1

Sequence Viewer

Length: 669 bp
ATGAAAAAGTTTCCACAACAGGAGGAGCTTCTGACAAAGGCCAAGTCATTTGCCAAGAATGGGAAAGATAACGTTTATGAGCTGGTTTGCGCCGAGTCGGAGATTTTATTGAATGGGCAGGATAACTTGTCTGTTTTGAAACATCAAATGGATGCTTCTGAAAGACATCAGAGTATTAGAGGTGAAGTGTTATCAGCTCGAAAAATTTTGGACGCCCATTTTTCTCCAAGAGCTGATGAGTATTTATGGGAGAAAGAATTGATTGGAGATCTTGTAAAGCATTCAAAAGATAAAATATCTAGAAATCAGGTGTCCATTGATTCGCTTGTCTACTACTGGAATTTCTGGAAGGAGAAGATTCTTCACATCATTGAATCTGTAGGATGTGTGGAAACTCCAGGGTACAATAGTTATGTAGAACTTTGTTTTACTTGTTTAGGAGTTTGGAGGTTGTATCATAATCTGAATCCAATCTATGTTTTACTGGTCCCTGATGCTGATTGGGTTAGCCATCTGGACATAAGGCATTTGAAAAGTTATGGGAAGTTGGTCTCCATTGATGTTCATCAGCTCATTTCAGCAGCTCAGTATTATTGGAGTTCAGAACTGCTCTCCGTTGGCATCAAAGTTTTGGAAAAGCTTGAAAAGAAGATAGTTTGGCTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

222

Amino Acids

25.78

Weight (kDa)

6.5

Isoelectric Point (pI)

26.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 330
AclI AACGTT 1 cut(s) 72
AcsI RAATTY 2 cut(s) 204, 340
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 6 cut(s) 112, 139, 285, 374, 532, 644
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 7 cut(s) 28, 82, 197, 233, 571, 584, 640
AluI AGCT 7 cut(s) 28, 82, 197, 233, 571, 584, 640
Alw26I GTCTC 1 cut(s) 556
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 2 cut(s) 204, 340
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 487
BaeI ACNNNNGTAYC 2 cut(s) 394, 427
BbvI GCAGC 1 cut(s) 593
BccI CCATC 1 cut(s) 519
BciT130I CCWGG 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 556
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 378
BglII AGATCT 1 cut(s) 268
BisI GCNGC 1 cut(s) 582
BlsI GCNGC 1 cut(s) 583
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 487
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 3 cut(s) 142, 484, 630
BpmI CTGGAG 1 cut(s) 381
BsaBI GATNNNNATC 1 cut(s) 564
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 556
BsaJI CCNNGG 1 cut(s) 398
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse1I ACTGG 2 cut(s) 341, 489
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 2 cut(s) 157, 389
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 599
BseNI ACTGG 2 cut(s) 341, 489
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 593
BshFI GGCC 1 cut(s) 41
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 556
BsmFI GGGAC 1 cut(s) 473
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 556
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 489
BspTNI GGTCTC 1 cut(s) 556
BsrI ACTGG 2 cut(s) 341, 489
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 1 cut(s) 268
BssNI GRCGYC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 399
BstACI GRCGYC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 585
BstF5I GGATG 2 cut(s) 157, 389
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 556
BstMBI GATC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 397
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 593
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 2 cut(s) 157, 389
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 487
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 403
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 1 cut(s) 585
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 397
FaiI YATR 7 cut(s) 78, 247, 414, 459, 477, 521, 540
FaqI GGGAC 1 cut(s) 473
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 582
FokI GGATG 2 cut(s) 164, 396
Fsp4HI GCNGC 1 cut(s) 582
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 582
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 1 cut(s) 41
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 213
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 5 cut(s) 95, 320, 358, 374, 466
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 6 cut(s) 33, 100, 160, 171, 465, 604
Hpy188III TCNNGA 3 cut(s) 300, 346, 515
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 213
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 3 cut(s) 142, 484, 630
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 72
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 3 cut(s) 353, 367, 661
MflI RGATCY 1 cut(s) 268
MluCI AATT 4 cut(s) 204, 257, 340, 664
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 3 cut(s) 16, 173, 441
MspR9I CCNGG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 1 cut(s) 399
NdeII GATC 1 cut(s) 268
NlaIV GGNNCC 1 cut(s) 489
NmeAIII GCCGAG 1 cut(s) 118
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 4 cut(s) 320, 358, 374, 466
PkrI GCNGC 1 cut(s) 583
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp1406I AACGTT 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 489
PspPI GGNCC 1 cut(s) 487
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SatI GCNGC 1 cut(s) 582
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 399
SfaNI GCATC 3 cut(s) 142, 484, 630
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 487
Sse9I AATT 4 cut(s) 204, 257, 340, 664
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 397
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 199
TasI AATT 4 cut(s) 204, 257, 340, 664
TfiI GAWTC 4 cut(s) 320, 358, 374, 466
TseI GCWGC 1 cut(s) 581
TspDTI ATGAA 2 cut(s) 17, 554
TspGWI ACGGA 1 cut(s) 604
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 2 cut(s) 204, 340
XbaI TCTAGA 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.