TPR and ankyrin repeat-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2500 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4935 |
| Acc16I | TGCGCA | 1 cut(s) | 3478 |
| Acc36I | ACCTGC | 2 cut(s) | 2500, 3683 |
| AccB1I | GGYRCC | 1 cut(s) | 1260 |
| AccBSI | CCGCTC | 2 cut(s) | 6071, 6160 |
| AccI | GTMKAC | 3 cut(s) | 2008, 4107, 5580 |
| AccII | CGCG | 1 cut(s) | 3326 |
| AclI | AACGTT | 1 cut(s) | 3785 |
| AclWI | GGATC | 8 cut(s) | 96, 969, 1137, 3109, 4129, 4602, 4808, 4911 |
| AcoI | YGGCCR | 3 cut(s) | 435, 2997, 4635 |
| AcyI | GRCGYC | 2 cut(s) | 5898, 6194 |
| AdeI | CACNNNGTG | 2 cut(s) | 3006, 6055 |
| AfaI | GTAC | 5 cut(s) | 475, 1275, 2308, 4181, 4912 |
| AflIII | ACRYGT | 4 cut(s) | 597, 1399, 2106, 5957 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1368 |
| AjnI | CCWGG | 8 cut(s) | 66, 814, 2916, 4924, 5035, 5139, 6008, 6144 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 3079, 3111, 5188, 5220 |
| Alw21I | GWGCWC | 4 cut(s) | 226, 2768, 5497, 6155 |
| Alw26I | GTCTC | 8 cut(s) | 451, 902, 2278, 3228, 3338, 3750, 4333, 5771 |
| AlwI | GGATC | 8 cut(s) | 96, 969, 1137, 3109, 4129, 4602, 4808, 4911 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 1211, 1331, 1643, 3164, 4621 |
| Ama87I | CYCGRG | 4 cut(s) | 183, 4817, 6125, 6163 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 914, 946, 3806, 3838, 6102, 6134 |
| AseI | ATTAAT | 4 cut(s) | 3384, 4037, 5217, 5343 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 77, 126, 659, 2283, 3533, 4892 |
| AspLEI | GCGC | 5 cut(s) | 1350, 3479, 5064, 5752, 5989 |
| AsuC2I | CCSGG | 6 cut(s) | 351, 952, 1856, 1886, 4639, 5874 |
| AvaI | CYCGRG | 4 cut(s) | 183, 4817, 6125, 6163 |
| AvaII | GGWCC | 5 cut(s) | 63, 809, 4264, 4922, 6073 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2339, 2372 |
| BalI | TGGCCA | 1 cut(s) | 2999 |
| BanI | GGYRCC | 1 cut(s) | 1260 |
| BanII | GRGCYC | 3 cut(s) | 4480, 4848, 5497 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1983, 2015 |
| BauI | CACGAG | 1 cut(s) | 2958 |
| BbsI | GAAGAC | 3 cut(s) | 2844, 5820, 6245 |
| Bbv12I | GWGCWC | 4 cut(s) | 226, 2768, 5497, 6155 |
| BceAI | ACGGC | 4 cut(s) | 776, 6067, 6193, 6207 |
| BciT130I | CCWGG | 8 cut(s) | 68, 816, 2918, 4926, 5037, 5141, 6010, 6146 |
| BclI | TGATCA | 3 cut(s) | 2035, 4809, 6046 |
| BcnI | CCSGG | 6 cut(s) | 351, 952, 1856, 1886, 4639, 5874 |
| BcoDI | GTCTC | 8 cut(s) | 451, 902, 2278, 3228, 3338, 3750, 4333, 5771 |
| BfaI | CTAG | 6 cut(s) | 911, 1302, 3210, 3272, 3426, 4077 |
| BfmI | CTRYAG | 8 cut(s) | 1285, 1323, 1827, 3255, 3294, 4155, 4613, 6175 |
| BfoI | RGCGCY | 1 cut(s) | 5065 |
| BfuAI | ACCTGC | 2 cut(s) | 2500, 3683 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 6019 |
| BglII | AGATCT | 2 cut(s) | 2071, 4045 |
| BlpI | GCTNAGC | 1 cut(s) | 138 |
| Bme18I | GGWCC | 5 cut(s) | 63, 809, 4264, 4922, 6073 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1368 |
| BmeT110I | CYCGRG | 4 cut(s) | 183, 4817, 6125, 6163 |
| BmrI | ACTGGG | 3 cut(s) | 750, 1221, 3043 |
| BmuI | ACTGGG | 3 cut(s) | 750, 1221, 3043 |
| BoxI | GACNNNNGTC | 1 cut(s) | 894 |
| BpiI | GAAGAC | 3 cut(s) | 2844, 5820, 6245 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 5173, 5205 |
| BpmI | CTGGAG | 4 cut(s) | 89, 2406, 5029, 5511 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1374, 1819, 3420 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 138 |
| BpuEI | CTTGAG | 4 cut(s) | 1997, 2627, 3965, 5483 |
| BpuMI | CCSGG | 6 cut(s) | 351, 952, 1856, 1886, 4639, 5874 |
| Bsa29I | ATCGAT | 1 cut(s) | 3113 |
| BsaBI | GATNNNNATC | 3 cut(s) | 906, 3993, 4341 |
| BsaHI | GRCGYC | 2 cut(s) | 5898, 6194 |
| BsaI | GGTCTC | 1 cut(s) | 4333 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 4035, 4065 |
| Bse3DI | GCAATG | 2 cut(s) | 2928, 4812 |
| Bse8I | GATNNNNATC | 3 cut(s) | 906, 3993, 4341 |
| BseBI | CCWGG | 8 cut(s) | 68, 816, 2918, 4926, 5037, 5141, 6010, 6146 |
| BseCI | ATCGAT | 1 cut(s) | 3113 |
| BseGI | GGATG | 9 cut(s) | 1286, 2623, 3284, 3295, 3994, 5149, 5836, 5936, 6004 |
| BseJI | GATNNNNATC | 3 cut(s) | 906, 3993, 4341 |
| BseMI | GCAATG | 2 cut(s) | 2928, 4812 |
| BseMII | CTCAG | 8 cut(s) | 152, 462, 870, 995, 1766, 1864, 4376, 5479 |
| BseRI | GAGGAG | 8 cut(s) | 1505, 2960, 3447, 3815, 5458, 5461, 6021, 6024 |
| BseX3I | CGGCCG | 1 cut(s) | 4635 |
| BseYI | CCCAGC | 2 cut(s) | 3645, 5386 |
| BsgI | GTGCAG | 2 cut(s) | 2523, 4492 |
| Bsh1236I | CGCG | 1 cut(s) | 3326 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4638 |
| BshNI | GGYRCC | 1 cut(s) | 1260 |
| BshVI | ATCGAT | 1 cut(s) | 3113 |
| BsiEI | CGRYCG | 1 cut(s) | 4638 |
| BsiHKAI | GWGCWC | 4 cut(s) | 226, 2768, 5497, 6155 |
| BsiHKCI | CYCGRG | 4 cut(s) | 183, 4817, 6125, 6163 |
| BsiSI | CCGG | 9 cut(s) | 12, 350, 952, 1855, 1885, 3057, 4638, 5874, 6066 |
| BslFI | GGGAC | 6 cut(s) | 49, 1212, 1609, 3572, 4250, 5856 |
| BsmAI | GTCTC | 8 cut(s) | 451, 902, 2278, 3228, 3338, 3750, 4333, 5771 |
| BsmBI | CGTCTC | 1 cut(s) | 2278 |
| BsmFI | GGGAC | 6 cut(s) | 49, 1212, 1609, 3572, 4250, 5856 |
| BsmI | GAATGC | 4 cut(s) | 196, 772, 4057, 6087 |
| Bso31I | GGTCTC | 1 cut(s) | 4333 |
| BsoBI | CYCGRG | 4 cut(s) | 183, 4817, 6125, 6163 |
| Bsp1286I | GDGCHC | 6 cut(s) | 226, 2768, 4480, 4848, 5497, 6155 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 138 |
| Bsp19I | CCATGG | 1 cut(s) | 4883 |
| BspCNI | CTCAG | 8 cut(s) | 151, 461, 871, 994, 1765, 1863, 4375, 5478 |
| BspDI | ATCGAT | 1 cut(s) | 3113 |
| BspFNI | CGCG | 1 cut(s) | 3326 |
| BspHI | TCATGA | 3 cut(s) | 1528, 2460, 2977 |
| BspMAI | CTGCAG | 4 cut(s) | 1327, 3259, 3298, 6179 |
| BspMI | ACCTGC | 2 cut(s) | 2500, 3683 |
| BspPI | GGATC | 8 cut(s) | 96, 969, 1137, 3109, 4129, 4602, 4808, 4911 |
| BspT107I | GGYRCC | 1 cut(s) | 1260 |
| BspTNI | GGTCTC | 1 cut(s) | 4333 |
| BsrBI | CCGCTC | 2 cut(s) | 6071, 6160 |
| BsrDI | GCAATG | 2 cut(s) | 2928, 4812 |
| BssNI | GRCGYC | 2 cut(s) | 5898, 6194 |
| BssSI | CACGAG | 1 cut(s) | 2958 |
| BssT1I | CCWWGG | 5 cut(s) | 3309, 3682, 4589, 4883, 6017 |
| Bst2BI | CACGAG | 1 cut(s) | 2958 |
| Bst2UI | CCWGG | 8 cut(s) | 68, 816, 2918, 4926, 5037, 5141, 6010, 6146 |
| Bst6I | CTCTTC | 5 cut(s) | 1149, 2118, 2536, 3096, 3563 |
| BstACI | GRCGYC | 2 cut(s) | 5898, 6194 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 230, 3164, 5711 |
| BstDSI | CCRYGG | 4 cut(s) | 792, 4883, 5417, 6209 |
| BstEII | GGTNACC | 1 cut(s) | 3845 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3686 |
| BstF5I | GGATG | 9 cut(s) | 1286, 2623, 3284, 3295, 3994, 5149, 5836, 5936, 6004 |
| BstFNI | CGCG | 1 cut(s) | 3326 |
| BstH2I | RGCGCY | 1 cut(s) | 5065 |
| BstHHI | GCGC | 5 cut(s) | 1350, 3479, 5064, 5752, 5989 |
| BstMAI | GTCTC | 8 cut(s) | 451, 902, 2278, 3228, 3338, 3750, 4333, 5771 |
| BstMCI | CGRYCG | 1 cut(s) | 4638 |
| BstNI | CCWGG | 8 cut(s) | 68, 816, 2918, 4926, 5037, 5141, 6010, 6146 |
| BstNSI | RCATGY | 8 cut(s) | 601, 1403, 1428, 1839, 2110, 2573, 3404, 5961 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 894 |
| BstPI | GGTNACC | 1 cut(s) | 3845 |
| BstSFI | CTRYAG | 8 cut(s) | 1285, 1323, 1827, 3255, 3294, 4155, 4613, 6175 |
| BstUI | CGCG | 1 cut(s) | 3326 |
| BstV2I | GAAGAC | 3 cut(s) | 2844, 5820, 6245 |
| BstX2I | RGATCY | 7 cut(s) | 88, 961, 1129, 2071, 4045, 4134, 4903 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 927, 2949 |
| BstYI | RGATCY | 7 cut(s) | 88, 961, 1129, 2071, 4045, 4134, 4903 |
| BstZI | CGGCCG | 1 cut(s) | 4635 |
| Bsu15I | ATCGAT | 1 cut(s) | 3113 |
| BsuTUI | ATCGAT | 1 cut(s) | 3113 |
| BtgI | CCRYGG | 4 cut(s) | 792, 4883, 5417, 6209 |
| BtgZI | GCGATG | 1 cut(s) | 3625 |
| BtsCI | GGATG | 9 cut(s) | 1286, 2623, 3284, 3295, 3994, 5149, 5836, 5936, 6004 |
| BtsI | GCAGTG | 4 cut(s) | 753, 3713, 5807, 5873 |
| BveI | ACCTGC | 2 cut(s) | 2500, 3683 |
| CaiI | CAGNNNCTG | 5 cut(s) | 1211, 1331, 1643, 3164, 4621 |
| CciI | TCATGA | 3 cut(s) | 1528, 2460, 2977 |
| CfoI | GCGC | 5 cut(s) | 1350, 3479, 5064, 5752, 5989 |
| ClaI | ATCGAT | 1 cut(s) | 3113 |
| CseI | GACGC | 3 cut(s) | 5844, 5906, 6183 |
| CsiI | ACCWGGT | 1 cut(s) | 5035 |
| Csp6I | GTAC | 5 cut(s) | 474, 1274, 2307, 4180, 4911 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2910, 2945 |
| CviQI | GTAC | 5 cut(s) | 474, 1274, 2307, 4180, 4911 |
| DraI | TTTAAA | 4 cut(s) | 490, 2101, 2388, 5472 |
| DraIII | CACNNNGTG | 2 cut(s) | 3006, 6055 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4935 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1368 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4935 |
| EaeI | YGGCCR | 3 cut(s) | 435, 2997, 4635 |
| EagI | CGGCCG | 1 cut(s) | 4635 |
| Eam1104I | CTCTTC | 5 cut(s) | 1149, 2118, 2536, 3096, 3563 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1368 |
| EarI | CTCTTC | 5 cut(s) | 1149, 2118, 2536, 3096, 3563 |
| EciI | GGCGGA | 2 cut(s) | 1446, 6027 |
| Ecl136II | GAGCTC | 1 cut(s) | 5495 |
| EclXI | CGGCCG | 1 cut(s) | 4635 |
| Eco130I | CCWWGG | 5 cut(s) | 3309, 3682, 4589, 4883, 6017 |
| Eco147I | AGGCCT | 4 cut(s) | 2268, 3710, 4892, 6102 |
| Eco24I | GRGCYC | 3 cut(s) | 4480, 4848, 5497 |
| Eco31I | GGTCTC | 1 cut(s) | 4333 |
| Eco32I | GATATC | 1 cut(s) | 1513 |
| Eco47I | GGWCC | 5 cut(s) | 63, 809, 4264, 4922, 6073 |
| Eco52I | CGGCCG | 1 cut(s) | 4635 |
| Eco53kI | GAGCTC | 1 cut(s) | 5495 |
| Eco88I | CYCGRG | 4 cut(s) | 183, 4817, 6125, 6163 |
| Eco91I | GGTNACC | 1 cut(s) | 3845 |
| EcoICRI | GAGCTC | 1 cut(s) | 5495 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3686 |
| EcoO109I | RGGNCCY | 2 cut(s) | 809, 2602 |
| EcoO65I | GGTNACC | 1 cut(s) | 3845 |
| EcoRI | GAATTC | 4 cut(s) | 1030, 1970, 4447, 4678 |
| EcoRII | CCWGG | 8 cut(s) | 66, 814, 2916, 4924, 5035, 5139, 6008, 6144 |
| EcoRV | GATATC | 1 cut(s) | 1513 |
| EcoT14I | CCWWGG | 5 cut(s) | 3309, 3682, 4589, 4883, 6017 |
| EcoT22I | ATGCAT | 1 cut(s) | 1837 |
| EcoT38I | GRGCYC | 3 cut(s) | 4480, 4848, 5497 |
| ErhI | CCWWGG | 5 cut(s) | 3309, 3682, 4589, 4883, 6017 |
| Esp3I | CGTCTC | 1 cut(s) | 2278 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2688, 2720, 3834, 3866 |
| FaqI | GGGAC | 6 cut(s) | 49, 1212, 1609, 3572, 4250, 5856 |
| FauI | CCCGC | 2 cut(s) | 3268, 3549 |
| FauNDI | CATATG | 1 cut(s) | 265 |
| FbaI | TGATCA | 3 cut(s) | 2035, 4809, 6046 |
| FblI | GTMKAC | 3 cut(s) | 2008, 4107, 5580 |
| FokI | GGATG | 9 cut(s) | 1293, 2630, 3291, 3302, 4001, 5156, 5843, 5923, 5991 |
| FriOI | GRGCYC | 3 cut(s) | 4480, 4848, 5497 |
| FspBI | CTAG | 6 cut(s) | 911, 1302, 3210, 3272, 3426, 4077 |
| FspI | TGCGCA | 1 cut(s) | 3478 |
| GlaI | GCGC | 5 cut(s) | 1349, 3478, 5063, 5751, 5988 |
| GsaI | CCCAGC | 2 cut(s) | 3649, 5390 |
| GsuI | CTGGAG | 4 cut(s) | 89, 2406, 5029, 5511 |
| HaeII | RGCGCY | 1 cut(s) | 5065 |
| HapII | CCGG | 9 cut(s) | 12, 350, 952, 1855, 1885, 3057, 4638, 5874, 6066 |
| HgaI | GACGC | 3 cut(s) | 5844, 5906, 6183 |
| HhaI | GCGC | 5 cut(s) | 1350, 3479, 5064, 5752, 5989 |
| Hin1I | GRCGYC | 2 cut(s) | 5898, 6194 |
| Hin6I | GCGC | 5 cut(s) | 1348, 3477, 5062, 5750, 5987 |
| HinP1I | GCGC | 5 cut(s) | 1348, 3477, 5062, 5750, 5987 |
| HincII | GTYRAC | 5 cut(s) | 933, 2009, 2292, 5005, 5581 |
| HindII | GTYRAC | 5 cut(s) | 933, 2009, 2292, 5005, 5581 |
| HindIII | AAGCTT | 8 cut(s) | 1766, 3051, 3531, 3930, 4415, 4868, 6250, 6263 |
| HpaII | CCGG | 9 cut(s) | 12, 350, 952, 1855, 1885, 3057, 4638, 5874, 6066 |
| Hpy166II | GTNNAC | 8 cut(s) | 933, 1093, 1847, 2009, 2292, 4108, 5005, 5581 |
| Hpy8I | GTNNAC | 8 cut(s) | 933, 1093, 1847, 2009, 2292, 4108, 5005, 5581 |
| Hpy99I | CGWCG | 3 cut(s) | 2010, 6193, 6199 |
| HpyCH4IV | ACGT | 4 cut(s) | 935, 1773, 3785, 5161 |
| HpySE526I | ACGT | 4 cut(s) | 935, 1773, 3785, 5161 |
| Hsp92I | GRCGYC | 2 cut(s) | 5898, 6194 |
| HspAI | GCGC | 5 cut(s) | 1348, 3477, 5062, 5750, 5987 |
| Ksp22I | TGATCA | 3 cut(s) | 2035, 4809, 6046 |
| MabI | ACCWGGT | 1 cut(s) | 5035 |
| MaeI | CTAG | 6 cut(s) | 911, 1302, 3210, 3272, 3426, 4077 |
| MaeII | ACGT | 4 cut(s) | 935, 1773, 3785, 5161 |
| MbiI | CCGCTC | 2 cut(s) | 6071, 6160 |
| MflI | RGATCY | 7 cut(s) | 88, 961, 1129, 2071, 4045, 4134, 4903 |
| MhlI | GDGCHC | 6 cut(s) | 226, 2768, 4480, 4848, 5497, 6155 |
| MlsI | TGGCCA | 1 cut(s) | 2999 |
| MluNI | TGGCCA | 1 cut(s) | 2999 |
| MmeI | TCCRAC | 7 cut(s) | 819, 3855, 4900, 5046, 5978, 6177, 6183 |
| Mox20I | TGGCCA | 1 cut(s) | 2999 |
| Mph1103I | ATGCAT | 1 cut(s) | 1837 |
| MroXI | GAANNNNTTC | 6 cut(s) | 77, 126, 659, 2283, 3533, 4892 |
| MscI | TGGCCA | 1 cut(s) | 2999 |
| MslI | CAYNNNNRTG | 3 cut(s) | 777, 861, 2988 |
| Msp20I | TGGCCA | 1 cut(s) | 2999 |
| MspI | CCGG | 9 cut(s) | 12, 350, 952, 1855, 1885, 3057, 4638, 5874, 6066 |
| MssI | GTTTAAAC | 1 cut(s) | 2101 |
| Mva1269I | GAATGC | 4 cut(s) | 196, 772, 4057, 6087 |
| MvaI | CCWGG | 8 cut(s) | 68, 816, 2918, 4926, 5037, 5141, 6010, 6146 |
| MvnI | CGCG | 1 cut(s) | 3326 |
| NciI | CCSGG | 6 cut(s) | 351, 952, 1856, 1886, 4639, 5874 |
| NcoI | CCATGG | 1 cut(s) | 4883 |
| NdeI | CATATG | 1 cut(s) | 265 |
| NmeAIII | GCCGAG | 1 cut(s) | 5926 |
| NmuCI | GTSAC | 7 cut(s) | 998, 1360, 1633, 3023, 5170, 5304, 5819 |
| NsbI | TGCGCA | 1 cut(s) | 3478 |
| NsiI | ATGCAT | 1 cut(s) | 1837 |
| NspI | RCATGY | 8 cut(s) | 601, 1403, 1428, 1839, 2110, 2573, 3404, 5961 |
| PaeI | GCATGC | 3 cut(s) | 1428, 2573, 3404 |
| PaeR7I | CTCGAG | 2 cut(s) | 6125, 6163 |
| PagI | TCATGA | 3 cut(s) | 1528, 2460, 2977 |
| PaqCI | CACCTGC | 1 cut(s) | 2500 |
| PceI | AGGCCT | 4 cut(s) | 2268, 3710, 4892, 6102 |
| PciI | ACATGT | 4 cut(s) | 597, 1399, 2106, 5957 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 5940, 6161 |
| PctI | GAATGC | 4 cut(s) | 196, 772, 4057, 6087 |
| PdmI | GAANNNNTTC | 6 cut(s) | 77, 126, 659, 2283, 3533, 4892 |
| PflFI | GACNNNGTC | 1 cut(s) | 6193 |
| PmeI | GTTTAAAC | 1 cut(s) | 2101 |
| PpuMI | RGGWCCY | 1 cut(s) | 809 |
| PscI | ACATGT | 4 cut(s) | 597, 1399, 2106, 5957 |
| PshAI | GACNNNNGTC | 1 cut(s) | 894 |
| PshBI | ATTAAT | 4 cut(s) | 3384, 4037, 5217, 5343 |
| Psp124BI | GAGCTC | 1 cut(s) | 5497 |
| Psp1406I | AACGTT | 1 cut(s) | 3785 |
| Psp5II | RGGWCCY | 1 cut(s) | 809 |
| Psp6I | CCWGG | 8 cut(s) | 66, 814, 2916, 4924, 5035, 5139, 6008, 6144 |
| PspEI | GGTNACC | 1 cut(s) | 3845 |
| PspFI | CCCAGC | 2 cut(s) | 3645, 5386 |
| PspGI | CCWGG | 8 cut(s) | 66, 814, 2916, 4924, 5035, 5139, 6008, 6144 |
| PspPPI | RGGWCCY | 1 cut(s) | 809 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2685, 2717 |
| PstI | CTGCAG | 4 cut(s) | 1327, 3259, 3298, 6179 |
| PstNI | CAGNNNCTG | 5 cut(s) | 1211, 1331, 1643, 3164, 4621 |
| PsuI | RGATCY | 7 cut(s) | 88, 961, 1129, 2071, 4045, 4134, 4903 |
| PsyI | GACNNNGTC | 1 cut(s) | 6193 |
| RsaI | GTAC | 5 cut(s) | 475, 1275, 2308, 4181, 4912 |
| RsaNI | GTAC | 5 cut(s) | 474, 1274, 2307, 4180, 4911 |
| RseI | CAYNNNNRTG | 3 cut(s) | 777, 861, 2988 |
| SacI | GAGCTC | 1 cut(s) | 5497 |
| SalI | GTCGAC | 2 cut(s) | 2007, 5579 |
| SduI | GDGCHC | 6 cut(s) | 226, 2768, 4480, 4848, 5497, 6155 |
| SexAI | ACCWGGT | 1 cut(s) | 5035 |
| SfcI | CTRYAG | 8 cut(s) | 1285, 1323, 1827, 3255, 3294, 4155, 4613, 6175 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 6019 |
| Sfr274I | CTCGAG | 2 cut(s) | 6125, 6163 |
| SinI | GGWCC | 5 cut(s) | 63, 809, 4264, 4922, 6073 |
| SlaI | CTCGAG | 2 cut(s) | 6125, 6163 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 777, 861, 2988 |
| SmlI | CTYRAG | 6 cut(s) | 2012, 2606, 3944, 5498, 6125, 6163 |
| SmoI | CTYRAG | 6 cut(s) | 2012, 2606, 3944, 5498, 6125, 6163 |
| SphI | GCATGC | 3 cut(s) | 1428, 2573, 3404 |
| SseBI | AGGCCT | 4 cut(s) | 2268, 3710, 4892, 6102 |
| SspI | AATATT | 2 cut(s) | 3138, 3549 |
| SspMI | CTAG | 6 cut(s) | 911, 1302, 3210, 3272, 3426, 4077 |
| SstI | GAGCTC | 1 cut(s) | 5497 |
| StuI | AGGCCT | 4 cut(s) | 2268, 3710, 4892, 6102 |
| StyI | CCWWGG | 5 cut(s) | 3309, 3682, 4589, 4883, 6017 |
| TaiI | ACGT | 4 cut(s) | 938, 1776, 3788, 5164 |
| TaqII | GACCGA | 1 cut(s) | 4315 |
| TatI | WGTACW | 1 cut(s) | 4179 |
| TauI | GCSGC | 4 cut(s) | 1431, 3635, 5638, 6160 |
| TseFI | GTSAC | 7 cut(s) | 998, 1360, 1633, 3023, 5170, 5304, 5819 |
| Tsp45I | GTSAC | 7 cut(s) | 998, 1360, 1633, 3023, 5170, 5304, 5819 |
| TspGWI | ACGGA | 3 cut(s) | 2294, 4081, 6240 |
| Tth111I | GACNNNGTC | 1 cut(s) | 6193 |
| VpaK11BI | GGWCC | 5 cut(s) | 63, 809, 4264, 4922, 6073 |
| VspI | ATTAAT | 4 cut(s) | 3384, 4037, 5217, 5343 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3686 |
| XbaI | TCTAGA | 2 cut(s) | 910, 4076 |
| XceI | RCATGY | 8 cut(s) | 601, 1403, 1428, 1839, 2110, 2573, 3404, 5961 |
| XhoI | CTCGAG | 2 cut(s) | 6125, 6163 |
| XmiI | GTMKAC | 3 cut(s) | 2008, 4107, 5580 |
| XmnI | GAANNNNTTC | 6 cut(s) | 77, 126, 659, 2283, 3533, 4892 |
| XspI | CTAG | 6 cut(s) | 911, 1302, 3210, 3272, 3426, 4077 |
| Zsp2I | ATGCAT | 1 cut(s) | 1837 |