TPR and ankyrin repeat-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 5 cut(s) | 2072, 2345, 3650, 3782, 7041 |
| AarI | CACCTGC | 2 cut(s) | 3917, 6561 |
| Acc16I | TGCGCA | 1 cut(s) | 2162 |
| Acc36I | ACCTGC | 3 cut(s) | 3917, 4603, 6561 |
| AccB1I | GGYRCC | 1 cut(s) | 6573 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 1097, 2748, 3259, 7429 |
| AccI | GTMKAC | 3 cut(s) | 791, 2957, 6800 |
| AccII | CGCG | 1 cut(s) | 3213 |
| AciI | CCGC | 8 cut(s) | 5, 1316, 3211, 4096, 5360, 5659, 5738, 8030 |
| AclI | AACGTT | 1 cut(s) | 22 |
| AcoI | YGGCCR | 3 cut(s) | 2556, 3026, 5100 |
| AcyI | GRCGYC | 2 cut(s) | 5813, 7476 |
| AdeI | CACNNNGTG | 1 cut(s) | 5109 |
| AfeI | AGCGCT | 1 cut(s) | 4829 |
| AflII | CTTAAG | 1 cut(s) | 7481 |
| AflIII | ACRYGT | 2 cut(s) | 594, 3496 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3465 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 4298, 4330, 5700, 5732 |
| Alw21I | GWGCWC | 4 cut(s) | 175, 1898, 4871, 6149 |
| Alw26I | GTCTC | 9 cut(s) | 445, 2746, 4106, 5441, 6430, 6454, 6601, 7486, 7920 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 389, 1097, 5267 |
| Ama87I | CYCGRG | 3 cut(s) | 168, 4709, 6860 |
| Aor51HI | AGCGCT | 1 cut(s) | 4829 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 5909, 5941, 7898, 7930, 7994, 8026 |
| AseI | ATTAAT | 2 cut(s) | 435, 6068 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 99, 993, 2678, 2791, 3535 |
| AspLEI | GCGC | 5 cut(s) | 635, 2163, 4830, 6113, 7107 |
| AsuC2I | CCSGG | 4 cut(s) | 692, 3049, 3977, 7944 |
| AsuII | TTCGAA | 1 cut(s) | 1612 |
| AvaI | CYCGRG | 3 cut(s) | 168, 4709, 6860 |
| AvaII | GGWCC | 6 cut(s) | 812, 1028, 2057, 2500, 6864, 7578 |
| BaeGI | GKGCMC | 1 cut(s) | 898 |
| BalI | TGGCCA | 3 cut(s) | 2558, 3028, 5102 |
| BamHI | GGATCC | 2 cut(s) | 3914, 8039 |
| BanI | GGYRCC | 1 cut(s) | 6573 |
| BanII | GRGCYC | 1 cut(s) | 1898 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2709, 2741, 4074, 4106 |
| BauI | CACGAG | 1 cut(s) | 930 |
| BbsI | GAAGAC | 5 cut(s) | 63, 2309, 2550, 3323, 6159 |
| Bbv12I | GWGCWC | 4 cut(s) | 175, 1898, 4871, 6149 |
| BceAI | ACGGC | 2 cut(s) | 4083, 4880 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4690, 4724 |
| BciVI | GTATCC | 1 cut(s) | 5693 |
| BclI | TGATCA | 3 cut(s) | 4126, 6138, 6550 |
| BcnI | CCSGG | 4 cut(s) | 692, 3049, 3977, 7944 |
| BcoDI | GTCTC | 9 cut(s) | 445, 2746, 4106, 5441, 6430, 6454, 6601, 7486, 7920 |
| BfmI | CTRYAG | 6 cut(s) | 608, 1574, 5250, 5397, 6180, 7872 |
| BfoI | RGCGCY | 3 cut(s) | 4831, 6114, 7108 |
| BfrI | CTTAAG | 1 cut(s) | 7481 |
| BfuAI | ACCTGC | 3 cut(s) | 3917, 4603, 6561 |
| BfuI | GTATCC | 1 cut(s) | 5693 |
| BglII | AGATCT | 4 cut(s) | 2886, 4162, 4942, 7703 |
| BmcAI | AGTACT | 1 cut(s) | 469 |
| Bme18I | GGWCC | 6 cut(s) | 812, 1028, 2057, 2500, 6864, 7578 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3465 |
| BmeT110I | CYCGRG | 3 cut(s) | 168, 4709, 6860 |
| BmrI | ACTGGG | 1 cut(s) | 753 |
| BmuI | ACTGGG | 1 cut(s) | 753 |
| BpiI | GAAGAC | 5 cut(s) | 63, 2309, 2550, 3323, 6159 |
| BpmI | CTGGAG | 5 cut(s) | 316, 4497, 4551, 5591, 7072 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4824 |
| Bpu14I | TTCGAA | 1 cut(s) | 1612 |
| BpuEI | CTTGAG | 3 cut(s) | 2217, 2675, 2824 |
| BpuMI | CCSGG | 4 cut(s) | 692, 3049, 3977, 7944 |
| Bsa29I | ATCGAT | 1 cut(s) | 5654 |
| BsaAI | YACGTR | 2 cut(s) | 1568, 5822 |
| BsaBI | GATNNNNATC | 1 cut(s) | 8044 |
| BsaHI | GRCGYC | 2 cut(s) | 5813, 7476 |
| BsaI | GGTCTC | 3 cut(s) | 2746, 6430, 6601 |
| BsaWI | WCCGGW | 1 cut(s) | 6866 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 3785, 3815, 7014, 7044 |
| Bse118I | RCCGGY | 1 cut(s) | 5159 |
| Bse3DI | GCAATG | 4 cut(s) | 1852, 2850, 4213, 5031 |
| Bse8I | GATNNNNATC | 1 cut(s) | 8044 |
| BseCI | ATCGAT | 1 cut(s) | 5654 |
| BseJI | GATNNNNATC | 1 cut(s) | 8044 |
| BseMI | GCAATG | 4 cut(s) | 1852, 2850, 4213, 5031 |
| BseRI | GAGGAG | 8 cut(s) | 1120, 2108, 3593, 4229, 5063, 6733, 7501, 7504 |
| BseSI | GKGCMC | 1 cut(s) | 898 |
| BseYI | CCCAGC | 3 cut(s) | 7429, 7850, 7952 |
| BsgI | GTGCAG | 5 cut(s) | 1725, 4222, 4626, 7551, 7904 |
| Bsh1236I | CGCG | 1 cut(s) | 3213 |
| Bsh1285I | CGRYCG | 1 cut(s) | 316 |
| BshNI | GGYRCC | 1 cut(s) | 6573 |
| BshVI | ATCGAT | 1 cut(s) | 5654 |
| BsiEI | CGRYCG | 1 cut(s) | 316 |
| BsiHKAI | GWGCWC | 4 cut(s) | 175, 1898, 4871, 6149 |
| BsiHKCI | CYCGRG | 3 cut(s) | 168, 4709, 6860 |
| BsiSI | CCGG | 6 cut(s) | 691, 3049, 3976, 5160, 6867, 7943 |
| BslFI | GGGAC | 6 cut(s) | 835, 2788, 2906, 4371, 7868, 7970 |
| BsmAI | GTCTC | 9 cut(s) | 445, 2746, 4106, 5441, 6430, 6454, 6601, 7486, 7920 |
| BsmBI | CGTCTC | 1 cut(s) | 4106 |
| BsmFI | GGGAC | 6 cut(s) | 835, 2788, 2906, 4371, 7868, 7970 |
| BsmI | GAATGC | 8 cut(s) | 181, 245, 1235, 1556, 1760, 1944, 4939, 6550 |
| Bso31I | GGTCTC | 3 cut(s) | 2746, 6430, 6601 |
| BsoBI | CYCGRG | 3 cut(s) | 168, 4709, 6860 |
| Bsp119I | TTCGAA | 1 cut(s) | 1612 |
| Bsp1286I | GDGCHC | 5 cut(s) | 175, 898, 1898, 4871, 6149 |
| Bsp1407I | TGTACA | 3 cut(s) | 2169, 4731, 4987 |
| Bsp19I | CCATGG | 2 cut(s) | 6926, 7460 |
| BspACI | CCGC | 8 cut(s) | 5, 1316, 3211, 4096, 5360, 5659, 5738, 8030 |
| BspDI | ATCGAT | 1 cut(s) | 5654 |
| BspFNI | CGCG | 1 cut(s) | 3213 |
| BspHI | TCATGA | 2 cut(s) | 3159, 5080 |
| BspMAI | CTGCAG | 2 cut(s) | 612, 5401 |
| BspMI | ACCTGC | 3 cut(s) | 3917, 4603, 6561 |
| BspQI | GCTCTTC | 2 cut(s) | 2797, 3014 |
| BspT104I | TTCGAA | 1 cut(s) | 1612 |
| BspT107I | GGYRCC | 1 cut(s) | 6573 |
| BspTI | CTTAAG | 1 cut(s) | 7481 |
| BspTNI | GGTCTC | 3 cut(s) | 2746, 6430, 6601 |
| BsrDI | GCAATG | 4 cut(s) | 1852, 2850, 4213, 5031 |
| BsrFI | RCCGGY | 1 cut(s) | 5159 |
| BsrGI | TGTACA | 3 cut(s) | 2169, 4731, 4987 |
| BssAI | RCCGGY | 1 cut(s) | 5159 |
| BssNAI | GTATAC | 2 cut(s) | 2958, 6801 |
| BssNI | GRCGYC | 2 cut(s) | 5813, 7476 |
| BssSI | CACGAG | 1 cut(s) | 930 |
| BssT1I | CCWWGG | 7 cut(s) | 2496, 2559, 3385, 5412, 6926, 7460, 7641 |
| Bst1107I | GTATAC | 2 cut(s) | 2958, 6801 |
| Bst2BI | CACGAG | 1 cut(s) | 930 |
| Bst6I | CTCTTC | 9 cut(s) | 1535, 1540, 2083, 2325, 2797, 3014, 5199, 6806, 7763 |
| BstACI | GRCGYC | 2 cut(s) | 5813, 7476 |
| BstAFI | CTTAAG | 1 cut(s) | 7481 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 5267 |
| BstAUI | TGTACA | 3 cut(s) | 2169, 4731, 4987 |
| BstBAI | YACGTR | 2 cut(s) | 1568, 5822 |
| BstBI | TTCGAA | 1 cut(s) | 1612 |
| BstDSI | CCRYGG | 2 cut(s) | 6926, 7460 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 822 |
| BstFNI | CGCG | 1 cut(s) | 3213 |
| BstH2I | RGCGCY | 3 cut(s) | 4831, 6114, 7108 |
| BstHHI | GCGC | 5 cut(s) | 635, 2163, 4830, 6113, 7107 |
| BstMAI | GTCTC | 9 cut(s) | 445, 2746, 4106, 5441, 6430, 6454, 6601, 7486, 7920 |
| BstMCI | CGRYCG | 1 cut(s) | 316 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 755, 2852, 5267, 5744, 5871, 7697, 8027 |
| BstNSI | RCATGY | 6 cut(s) | 598, 1799, 3500, 3525, 4676, 5507 |
| BstSFI | CTRYAG | 6 cut(s) | 608, 1574, 5250, 5397, 6180, 7872 |
| BstSLI | GKGCMC | 1 cut(s) | 898 |
| BstSNI | TACGTA | 2 cut(s) | 1568, 5822 |
| BstUI | CGCG | 1 cut(s) | 3213 |
| BstV2I | GAAGAC | 5 cut(s) | 63, 2309, 2550, 3323, 6159 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 5052 |
| BstZ17I | GTATAC | 2 cut(s) | 2958, 6801 |
| Bsu15I | ATCGAT | 1 cut(s) | 5654 |
| BsuI | GTATCC | 1 cut(s) | 5693 |
| BsuTUI | ATCGAT | 1 cut(s) | 5654 |
| BtgI | CCRYGG | 2 cut(s) | 6926, 7460 |
| BtgZI | GCGATG | 2 cut(s) | 5728, 7962 |
| BtsI | GCAGTG | 3 cut(s) | 840, 1668, 3378 |
| BveI | ACCTGC | 3 cut(s) | 3917, 4603, 6561 |
| CaiI | CAGNNNCTG | 3 cut(s) | 389, 1097, 5267 |
| CciI | TCATGA | 2 cut(s) | 3159, 5080 |
| CfoI | GCGC | 5 cut(s) | 635, 2163, 4830, 6113, 7107 |
| Cfr10I | RCCGGY | 1 cut(s) | 5159 |
| ClaI | ATCGAT | 1 cut(s) | 5654 |
| CseI | GACGC | 4 cut(s) | 1662, 3055, 5802, 7484 |
| CsiI | ACCWGGT | 2 cut(s) | 87, 7078 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3018, 3053 |
| DraI | TTTAAA | 3 cut(s) | 484, 4192, 4479 |
| DraIII | CACNNNGTG | 1 cut(s) | 5109 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3465 |
| EaeI | YGGCCR | 3 cut(s) | 2556, 3026, 5100 |
| Eam1104I | CTCTTC | 9 cut(s) | 1535, 1540, 2083, 2325, 2797, 3014, 5199, 6806, 7763 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3465 |
| EarI | CTCTTC | 9 cut(s) | 1535, 1540, 2083, 2325, 2797, 3014, 5199, 6806, 7763 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Ecl136II | GAGCTC | 1 cut(s) | 1896 |
| Eco105I | TACGTA | 2 cut(s) | 1568, 5822 |
| Eco130I | CCWWGG | 7 cut(s) | 2496, 2559, 3385, 5412, 6926, 7460, 7641 |
| Eco24I | GRGCYC | 1 cut(s) | 1898 |
| Eco31I | GGTCTC | 3 cut(s) | 2746, 6430, 6601 |
| Eco32I | GATATC | 2 cut(s) | 280, 3601 |
| Eco47I | GGWCC | 6 cut(s) | 812, 1028, 2057, 2500, 6864, 7578 |
| Eco47III | AGCGCT | 1 cut(s) | 4829 |
| Eco53kI | GAGCTC | 1 cut(s) | 1896 |
| Eco88I | CYCGRG | 3 cut(s) | 168, 4709, 6860 |
| EcoICRI | GAGCTC | 1 cut(s) | 1896 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 822 |
| EcoO109I | RGGNCCY | 1 cut(s) | 4705 |
| EcoRI | GAATTC | 3 cut(s) | 1280, 1634, 3130 |
| EcoRV | GATATC | 2 cut(s) | 280, 3601 |
| EcoT14I | CCWWGG | 7 cut(s) | 2496, 2559, 3385, 5412, 6926, 7460, 7641 |
| EcoT22I | ATGCAT | 2 cut(s) | 1944, 4338 |
| EcoT38I | GRGCYC | 1 cut(s) | 1898 |
| ErhI | CCWWGG | 7 cut(s) | 2496, 2559, 3385, 5412, 6926, 7460, 7641 |
| Esp3I | CGTCTC | 1 cut(s) | 4106 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 4791, 4823, 5296, 5328, 5405, 5437 |
| FaqI | GGGAC | 6 cut(s) | 835, 2788, 2906, 4371, 7868, 7970 |
| FauNDI | CATATG | 3 cut(s) | 259, 4197, 6027 |
| FbaI | TGATCA | 3 cut(s) | 4126, 6138, 6550 |
| FblI | GTMKAC | 3 cut(s) | 791, 2957, 6800 |
| FriOI | GRGCYC | 1 cut(s) | 1898 |
| FspI | TGCGCA | 1 cut(s) | 2162 |
| GlaI | GCGC | 5 cut(s) | 634, 2162, 4829, 6112, 7106 |
| GsaI | CCCAGC | 3 cut(s) | 7433, 7854, 7956 |
| GsuI | CTGGAG | 5 cut(s) | 316, 4497, 4551, 5591, 7072 |
| HaeII | RGCGCY | 3 cut(s) | 4831, 6114, 7108 |
| HapII | CCGG | 6 cut(s) | 691, 3049, 3976, 5160, 6867, 7943 |
| HgaI | GACGC | 4 cut(s) | 1662, 3055, 5802, 7484 |
| HhaI | GCGC | 5 cut(s) | 635, 2163, 4830, 6113, 7107 |
| Hin1I | GRCGYC | 2 cut(s) | 5813, 7476 |
| Hin6I | GCGC | 5 cut(s) | 633, 2161, 4828, 6111, 7105 |
| HinP1I | GCGC | 5 cut(s) | 633, 2161, 4828, 6111, 7105 |
| HincII | GTYRAC | 5 cut(s) | 514, 1182, 3180, 3849, 5980 |
| HindII | GTYRAC | 5 cut(s) | 514, 1182, 3180, 3849, 5980 |
| HindIII | AAGCTT | 6 cut(s) | 1876, 3857, 5634, 5950, 6512, 6896 |
| HpaI | GTTAAC | 2 cut(s) | 1182, 3849 |
| HpaII | CCGG | 6 cut(s) | 691, 3049, 3976, 5160, 6867, 7943 |
| HpyCH4IV | ACGT | 5 cut(s) | 22, 1567, 3287, 4722, 5821 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 755, 2852, 5267, 5744, 5871, 7697, 8027 |
| HpySE526I | ACGT | 5 cut(s) | 22, 1567, 3287, 4722, 5821 |
| Hsp92I | GRCGYC | 2 cut(s) | 5813, 7476 |
| HspAI | GCGC | 5 cut(s) | 633, 2161, 4828, 6111, 7105 |
| KroI | GCCGGC | 1 cut(s) | 5159 |
| KroNI | GCCGGC | 1 cut(s) | 5161 |
| Ksp22I | TGATCA | 3 cut(s) | 4126, 6138, 6550 |
| KspAI | GTTAAC | 2 cut(s) | 1182, 3849 |
| LguI | GCTCTTC | 2 cut(s) | 2797, 3014 |
| LmnI | GCTCC | 7 cut(s) | 1708, 2005, 4516, 4847, 6817, 7022, 7102 |
| MabI | ACCWGGT | 2 cut(s) | 87, 7078 |
| MaeII | ACGT | 5 cut(s) | 22, 1567, 3287, 4722, 5821 |
| MfeI | CAATTG | 7 cut(s) | 1745, 2832, 3365, 3743, 3962, 4251, 7582 |
| MhlI | GDGCHC | 5 cut(s) | 175, 898, 1898, 4871, 6149 |
| MlsI | TGGCCA | 3 cut(s) | 2558, 3028, 5102 |
| MluNI | TGGCCA | 3 cut(s) | 2558, 3028, 5102 |
| MlyI | GAGTC | 9 cut(s) | 968, 1011, 1499, 3475, 3882, 4183, 4378, 4805, 8006 |
| MmeI | TCCRAC | 5 cut(s) | 1082, 2729, 3207, 3277, 5685 |
| Mox20I | TGGCCA | 3 cut(s) | 2558, 3028, 5102 |
| Mph1103I | ATGCAT | 2 cut(s) | 1944, 4338 |
| MroNI | GCCGGC | 1 cut(s) | 5159 |
| MroXI | GAANNNNTTC | 5 cut(s) | 99, 993, 2678, 2791, 3535 |
| MscI | TGGCCA | 3 cut(s) | 2558, 3028, 5102 |
| MslI | CAYNNNNRTG | 5 cut(s) | 4407, 5592, 6030, 6588, 7926 |
| Msp20I | TGGCCA | 3 cut(s) | 2558, 3028, 5102 |
| MspA1I | CMGCKG | 4 cut(s) | 2846, 5738, 6455, 7456 |
| MspCI | CTTAAG | 1 cut(s) | 7481 |
| MspI | CCGG | 6 cut(s) | 691, 3049, 3976, 5160, 6867, 7943 |
| MssI | GTTTAAAC | 1 cut(s) | 4192 |
| MunI | CAATTG | 7 cut(s) | 1745, 2832, 3365, 3743, 3962, 4251, 7582 |
| Mva1269I | GAATGC | 8 cut(s) | 181, 245, 1235, 1556, 1760, 1944, 4939, 6550 |
| MvnI | CGCG | 1 cut(s) | 3213 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 755, 2852, 5267, 5744, 5871, 7697, 8027 |
| NaeI | GCCGGC | 1 cut(s) | 5161 |
| NciI | CCSGG | 4 cut(s) | 692, 3049, 3977, 7944 |
| NcoI | CCATGG | 2 cut(s) | 6926, 7460 |
| NdeI | CATATG | 3 cut(s) | 259, 4197, 6027 |
| NgoMIV | GCCGGC | 1 cut(s) | 5159 |
| NmeAIII | GCCGAG | 1 cut(s) | 7866 |
| NmuCI | GTSAC | 9 cut(s) | 1093, 1904, 3002, 3067, 3095, 3359, 3457, 7865, 7961 |
| NsbI | TGCGCA | 1 cut(s) | 2162 |
| NsiI | ATGCAT | 2 cut(s) | 1944, 4338 |
| NspI | RCATGY | 6 cut(s) | 598, 1799, 3500, 3525, 4676, 5507 |
| NspV | TTCGAA | 1 cut(s) | 1612 |
| PaeI | GCATGC | 2 cut(s) | 1799, 5507 |
| PaeR7I | CTCGAG | 2 cut(s) | 168, 4709 |
| PagI | TCATGA | 2 cut(s) | 3159, 5080 |
| PaqCI | CACCTGC | 2 cut(s) | 3917, 6561 |
| PciI | ACATGT | 2 cut(s) | 594, 3496 |
| PciSI | GCTCTTC | 2 cut(s) | 2797, 3014 |
| PctI | GAATGC | 8 cut(s) | 181, 245, 1235, 1556, 1760, 1944, 4939, 6550 |
| PdiI | GCCGGC | 1 cut(s) | 5161 |
| PdmI | GAANNNNTTC | 5 cut(s) | 99, 993, 2678, 2791, 3535 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 1097, 2748, 3259, 7429 |
| PfoI | TCCNGGA | 1 cut(s) | 4716 |
| Ple19I | CGATCG | 1 cut(s) | 316 |
| PleI | GAGTC | 9 cut(s) | 967, 1011, 1499, 3474, 3881, 4182, 4378, 4805, 8005 |
| PmeI | GTTTAAAC | 1 cut(s) | 4192 |
| PpsI | GAGTC | 9 cut(s) | 967, 1011, 1499, 3474, 3881, 4182, 4378, 4805, 8005 |
| Ppu21I | YACGTR | 2 cut(s) | 1568, 5822 |
| PscI | ACATGT | 2 cut(s) | 594, 3496 |
| PshBI | ATTAAT | 2 cut(s) | 435, 6068 |
| PsiI | TTATAA | 5 cut(s) | 2072, 2345, 3650, 3782, 7041 |
| Psp124BI | GAGCTC | 1 cut(s) | 1898 |
| Psp1406I | AACGTT | 1 cut(s) | 22 |
| PspFI | CCCAGC | 3 cut(s) | 7429, 7850, 7952 |
| PspXI | VCTCGAGB | 2 cut(s) | 168, 4709 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2229, 2261, 4788, 4820 |
| PstI | CTGCAG | 2 cut(s) | 612, 5401 |
| PstNI | CAGNNNCTG | 3 cut(s) | 389, 1097, 5267 |
| PvuI | CGATCG | 1 cut(s) | 316 |
| PvuII | CAGCTG | 3 cut(s) | 2846, 6455, 7456 |
| RseI | CAYNNNNRTG | 5 cut(s) | 4407, 5592, 6030, 6588, 7926 |
| SacI | GAGCTC | 1 cut(s) | 1898 |
| SapI | GCTCTTC | 2 cut(s) | 2797, 3014 |
| ScaI | AGTACT | 1 cut(s) | 469 |
| SchI | GAGTC | 9 cut(s) | 968, 1011, 1499, 3475, 3882, 4183, 4378, 4805, 8006 |
| SduI | GDGCHC | 5 cut(s) | 175, 898, 1898, 4871, 6149 |
| SexAI | ACCWGGT | 2 cut(s) | 87, 7078 |
| SfcI | CTRYAG | 6 cut(s) | 608, 1574, 5250, 5397, 6180, 7872 |
| Sfr274I | CTCGAG | 2 cut(s) | 168, 4709 |
| SfuI | TTCGAA | 1 cut(s) | 1612 |
| SinI | GGWCC | 6 cut(s) | 812, 1028, 2057, 2500, 6864, 7578 |
| SlaI | CTCGAG | 2 cut(s) | 168, 4709 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 4407, 5592, 6030, 6588, 7926 |
| SmlI | CTYRAG | 6 cut(s) | 168, 2232, 2690, 2803, 4709, 7481 |
| SmoI | CTYRAG | 6 cut(s) | 168, 2232, 2690, 2803, 4709, 7481 |
| SnaBI | TACGTA | 2 cut(s) | 1568, 5822 |
| SphI | GCATGC | 2 cut(s) | 1799, 5507 |
| SsiI | CCGC | 8 cut(s) | 5, 1316, 3211, 4096, 5360, 5659, 5738, 8030 |
| SspI | AATATT | 7 cut(s) | 131, 1563, 1662, 2880, 4560, 5241, 6087 |
| SstI | GAGCTC | 1 cut(s) | 1898 |
| StyI | CCWWGG | 7 cut(s) | 2496, 2559, 3385, 5412, 6926, 7460, 7641 |
| TaiI | ACGT | 5 cut(s) | 25, 1570, 3290, 4725, 5824 |
| TaqII | GACCGA | 1 cut(s) | 3728 |
| TatI | WGTACW | 6 cut(s) | 467, 2169, 4411, 4731, 4987, 7681 |
| TauI | GCSGC | 1 cut(s) | 8033 |
| TseFI | GTSAC | 9 cut(s) | 1093, 1904, 3002, 3067, 3095, 3359, 3457, 7865, 7961 |
| Tsp45I | GTSAC | 9 cut(s) | 1093, 1904, 3002, 3067, 3095, 3359, 3457, 7865, 7961 |
| TspGWI | ACGGA | 5 cut(s) | 883, 2690, 4385, 6303, 6418 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 1097, 2748, 3259, 7429 |
| Vha464I | CTTAAG | 1 cut(s) | 7481 |
| VpaK11BI | GGWCC | 6 cut(s) | 812, 1028, 2057, 2500, 6864, 7578 |
| VspI | ATTAAT | 2 cut(s) | 435, 6068 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 822 |
| XbaI | TCTAGA | 3 cut(s) | 2639, 2905, 6982 |
| XceI | RCATGY | 6 cut(s) | 598, 1799, 3500, 3525, 4676, 5507 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1098 |
| XhoI | CTCGAG | 2 cut(s) | 168, 4709 |
| XmiI | GTMKAC | 3 cut(s) | 791, 2957, 6800 |
| XmnI | GAANNNNTTC | 5 cut(s) | 99, 993, 2678, 2791, 3535 |
| ZrmI | AGTACT | 1 cut(s) | 469 |
| Zsp2I | ATGCAT | 2 cut(s) | 1944, 4338 |