RLG00000002343

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000223
Physical Location & Seq
Forward (+)
32543768 .. 32544247
480 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002343

Sequence Viewer

Length: 480 bp
ATGATTGAATGGATTGAGAAGTCTGACAAAAATTGGAGGCAGTATTATCAGCCACTTATGTTGCGATTGGTTACTGTCTTGTGTTTGATTCATTTGAACTTTGGCTCGTGTTTGGATATGATCCATGATTTGCTGGGAAGAAAGTTTATCACTGAACTCCTACCAGGAGAGTTTTATGATGCACTTAGGAGGAGGAGGAAACACTTTAAATGTGAGAATGTGCTTGCTGAAGCTCTCAACAAGATTGATAATACTTTGGTGATTGCAAGTTTTGGGGCTGATTGTTCAAGGTTGTACTGTTTGGATGCCATCTTTGTCGACATGACGGCCAACCAATGCAAGGATGACGTATTGAGAAAATGGTTTCCAGATCCGACATGTCAACAGGATGTTGATACTTCCACCCCATCTGGAAGCAAGGCGAAGAACCAGACAAAGGGCAAGAACAAGAAAAACAAAACGAAAGAAAGCCGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

160

Amino Acids

18.49

Weight (kDa)

9.07

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 318
AclWI GGATC 2 cut(s) 115, 365
AcoI YGGCCR 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 340, 436
AflIII ACRYGT 1 cut(s) 377
AgsI TTSAA 3 cut(s) 8, 97, 288
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
AlwI GGATC 2 cut(s) 115, 365
AoxI GGCC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 271
BauI CACGAG 1 cut(s) 106
BccI CCATC 2 cut(s) 317, 415
BceAI ACGGC 1 cut(s) 342
BciT130I CCWGG 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 169, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 436
BseBI CCWGG 1 cut(s) 165
BseGI GGATG 3 cut(s) 310, 349, 394
BseLI CCNNNNNNNGG 2 cut(s) 340, 436
BseRI GAGGAG 2 cut(s) 205, 208
BseYI CCCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 329
BsiSI CCGG 1 cut(s) 472
BslI CCNNNNNNNGG 2 cut(s) 340, 436
BsnI GGCC 1 cut(s) 329
Bsp143I GATC 2 cut(s) 120, 370
BspANI GGCC 1 cut(s) 329
BspPI GGATC 2 cut(s) 115, 365
BssMI GATC 2 cut(s) 120, 370
BssSI CACGAG 1 cut(s) 106
Bst2BI CACGAG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 76, 299
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 3 cut(s) 310, 349, 394
BstKTI GATC 2 cut(s) 123, 373
BstMBI GATC 2 cut(s) 120, 370
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 3 cut(s) 310, 349, 394
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 295
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
CviAII CATG 3 cut(s) 125, 322, 378
CviJI RGCY 6 cut(s) 52, 105, 233, 278, 329, 471
CviKI_1 RGCY 6 cut(s) 52, 105, 233, 278, 329, 471
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 185
DpnI GATC 2 cut(s) 122, 372
DpnII GATC 2 cut(s) 120, 370
DraI TTTAAA 1 cut(s) 208
EaeI YGGCCR 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 163
FaeI CATG 3 cut(s) 128, 325, 381
FaiI YATR 6 cut(s) 59, 119, 126, 177, 323, 379
FatI CATG 3 cut(s) 124, 321, 377
FblI GTMKAC 1 cut(s) 318
FokI GGATG 3 cut(s) 317, 356, 401
GsaI CCCAGC 1 cut(s) 137
HaeIII GGCC 1 cut(s) 329
HapII CCGG 1 cut(s) 472
Hin1II CATG 3 cut(s) 128, 325, 381
HincII GTYRAC 2 cut(s) 319, 383
HindII GTYRAC 2 cut(s) 319, 383
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 472
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 319, 383
Hpy188I TCNGA 2 cut(s) 25, 375
Hpy188III TCNNGA 2 cut(s) 368, 411
Hpy8I GTNNAC 2 cut(s) 319, 383
HpyCH4III ACNGT 2 cut(s) 76, 299
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 3 cut(s) 182, 266, 339
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 3 cut(s) 128, 325, 381
Kzo9I GATC 2 cut(s) 120, 370
LpnPI CCDG 7 cut(s) 119, 150, 177, 371, 381, 396, 443
LweI GCATC 2 cut(s) 169, 295
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 70
MalI GATC 2 cut(s) 122, 372
MboI GATC 2 cut(s) 120, 370
MboII GAAGA 2 cut(s) 150, 436
MflI RGATCY 1 cut(s) 370
MluCI AATT 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 398
MnlI CCTC 4 cut(s) 30, 183, 186, 189
MseI TTAA 1 cut(s) 207
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
NdeII GATC 2 cut(s) 120, 370
NlaIII CATG 3 cut(s) 128, 325, 381
NspI RCATGY 1 cut(s) 381
PciI ACATGT 1 cut(s) 377
PfeI GAWTC 1 cut(s) 88
PscI ACATGT 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SalI GTCGAC 1 cut(s) 317
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 2 cut(s) 120, 370
ScrFI CCNGG 1 cut(s) 165
SetI ASST 3 cut(s) 235, 293, 351
SfaNI GCATC 2 cut(s) 169, 295
Sse9I AATT 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 76, 299
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 318
TasI AATT 1 cut(s) 31
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 157
XceI RCATGY 1 cut(s) 381
XmiI GTMKAC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.