Prupe.1G134300_v2.0.a1

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000223
Physical Location & Seq
Reverse (-)
10602602 .. 10612696
10095 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G134300.1

Sequence Viewer

Length: 7836 bp
ATGGAGGAAGCTAAAACAGAACGTTTCAGTGATATCGTGTTTTCTTGGTCGCTTGAAGACATTTTCAATGAGAATCTTTACAAGAACCAGGTGGAAAAGATTCCTGAATCATTTCATTCGGTTTGGCAATATTTTGGGTCTTATATACATCCTTTATTGGAAGAAACTCGAGCACAGGTGCATTCAAGTATGGAAACTATTGACAAAGCACCATTTGCTGAAGTGGTTGGTTTTGAAGAATGCAATCCTCATGGGGTTGGGGCTTACGGGAGAAATGTATATGATATCAAGGTTGATTGCTGGAGAAACAGGTTCAGTGATCGCGGCAAGGAACCATACAAAACTTTGCCTGGGGATCTTTTTGTCTTAGCAGATGCCAAACCCGAAACTGTTTCTGATTTACAAAGGGTAGCGAGGTCCTGGGCTTTTGTTTCTGTCACTAATGTCTCAGAAAATGAGAACGAGGATGATACTACTTCTCTTTATTTTAAAGTCAAGGCATCCAGAGAGTTTGAAGTCAACGATAGCACCCATACATCACTATTTTTGGTTTTCCTGGTAAATTTAATCCCTAATGGCAGAATATGGAAAGCGTTGCACATGTCCGGAAACCAGAAGATTATCAAAGAAGTTTTGTGCACCAATTCTGTGGCTCAGAAAAACAATTATCTCTGTTCCGAAACAAATGATGGCATCCGGGATAAGTGGTTAGTTGAGAGTTCATCATGGGGATTGAATGAGTCCCAAACTGGGGCTGTTTTGGCATGTCTTGAAATGCTGCATTGTGATTCCAAGCCTACTGTGCAACTTATATGGGGTCCTCCAGGGACAGGAAAAACTAAAACCACCGCTACTTTGCTTTTTACTCTGTTACAGATGAACTGTAGGACTGTTATTTGTGCCCCAACGAATGTTGCAATAACTGAAATTGCTTCTCGTTTTCTAGAGATAGTAACTAAAACAGAGTCCAAGTCCTTGTTCTGTTCTTTGGGAGAAGTTCTTCTATTTGGGAATAAGGAGCGACTTAAAGTTGGTGCACACATTGAAGATATATATTTGAATTACCGTGTCAAAAAGCTTGGTGAGTGCTTGGGGCCAGTGACTGGTTGGAGGAGTTGCTTTGCTTCCATGATAGATTTTCTTGAAGATTGTGTTTCTCATTACCACGTTTTCCAGAAAAATGAGTTAACCGAAGAGAAAGAACATAATGGTGTTACTGAACTGAAAGAGAAAGAATGCAGAAGTGACACTGAACTTATCAAGGGGAAGTGCAAATCATTTCTTGAATTTTTCAGAGATAGATTTGTTTCTACTGCATTACCACTAAGATATTGCATTTCTACCTTATGTACCCATATAGCCAAAAATTACATTTCGGAACATAATTTCCAAAACATGATTTCACTCATACGCTTAGTTGAAACCATTGAATTTTTATTGGTCCAAGATAATGTTGTTTCTGAAGCATTGGAACTCCTTTGCTCTCGTTCAGAATTTGAAAATGTGGCTGAGTCATCATTTGTAGATAACACATTTCTGCTGGGCATCAAGATAGGAGAATGCCTTTCAGTGTTACGTACTCTACAGGATTCTCTTAGTAGACTTCACCTTCCAAATGTTAGGAATGAAGAATCTCTAATGGAATTCTGTTTTCAAAGAGCTTCCTTAATATTTTGCACCGTGTCAAGTTCCTATAAGCTGCATAGAGTGGAAATGGAGCCACTGACAATTGCTGTTATTGATGAAGCTGCACAATTGAAAGAATGTGAATCAACAATAACCCTGCAACTTCCAGGCGTGAAGCATGCTGTTCTTGTTGGTGATGAATGTCAGTTACTAGCTACGGTGAAAAGCAATGTTTCTAATGAGGCTGCTTTTTGTAGAAGCTTGTTTGAGAGGTTGAGCTCAATGGGTCACTCAAAACACCTTCTGAATATGCAATACAGAATGCATCCCTCCATAAGTTTCTTCTCAAATTCAAATTTCTATAATAACCAGATCCTAGAAGCTCCAATCGTTAAAAAAAGAAGCCATGAGAAACACTATCTTCCAGGGTCAATGTTTGGTCCTTTTTCTTTTATAAATGTAATCGGTGGAATGGAAGAGAAGGATGAGGATGGACATAGTCCAAAAAATTTGGTGGAGGTTTCTATTATTCTTGAACTACTGCAGAATCTGTACAAAGTTGCAGTTCAGGACAAACTTCGACAGAAGTATGAAAAGATTTATGGCTTTACAGTGAAGGTGAGGACGGTTGAAGGGTTCCAGGGTGGGGAAGAGGATGTAATTATAATGTCCACTGTACGATCTAATAGTCATCAGTCCCTTGATTTTATATCACAACCACAAAGAGTTAATGTCGCTCTTACAAGGGCTAGGCATTGTCTTTGGATTCTGGGACATGAAAGAACTCTACTCGATAGCGAATCTGTTTGGAAGGCCTTGGTCCTTGATGCCAAAAGTCGTCAATGCTTCTTTAATGCTGATGAAGACAAGAATTTGGCCAAGGCCATATTAGAGGTGAAGAAAGAGTTTGACCAATTTGATGATCTGCTTAATGCTGACAGCATACTTTTTAGAAGTTCTAGATGGAAGGTACTTTTCAGTGATAATTTTCTGGAGTCATTCAAAATGCTAGAGTCAATCCGTCTGAAGAAGTCTGTATTAAATCTTCTACTGAAGCTTTACAGTGGTTGGAGACCCAAGAACCGAAATGTGGGGATAATTTGTGGAAGCTCTTCACCAATCTTGAGACAATATAAATTTGAAGGTCTATATATTGTTTGCACAACTGACATTGCAAAGGATGTGAAATACGTTCAAATATTAAAGATCTGGGACATATTGCCTCTACAGGATATTCCAAAATTGGTAAATCGTCTAGAGAGTATTTTGACAAGATATACAGATGATTTTATCAATCGGACCAGTGATTTGGAAGTTCCTAAGAGCTGGCCACTCTCTTTGGATGTTCCCCGGTTCAAGGATCTTAGCATCACTGAAAACCAGAGTGATTTAGTTGGTGGCGACGATTCTGATGGTAGAAATTATGTTGAGAATTCACAGGTCAGCGAGAGTTTGTTGCTCATGAAATTTTACTCCTTGTCATCTGGTGTGGAAATGGAGATTATGCTTTATCATAGAAGTAGCTTTATAGTTGGACGGTCAGGAACAGGAAAGACCACAATTTTAACAATGAAATTATTTCAGAATGAACAATGTCACCAATTGGCAGTGCAAGGATGCCATAGTAGTCAAAATAGCATTAACCAGAGTTCTTCAGCTACTATGGGGAGAACTCCACTACGCCAGCTTTTTGTCACCAAACATGTTTTACACTTAAAAAGTTTTGCATGTGGTGGTGGCAGTGATTCAACTGAAAGGAGTTTGATTGATATGGCTGATTTTGATGAGGATGAAGCCCAATTCAAGGATATGAAGGATTCCTTTCATGATATTCCTCCCAACTCTTATCCTCTTGTCATAACATTCCATAAGTTCTTGATGATGCTTGATGGAACACCGAGTGCCGAAATGAGGGAAACAAACTCATACTTCGAAAGATTCCTTGATGCTACAAAACTTACTCACAGTCAATTGCAAAGTTCAAGATCAGTTGCATTGGAGACCTTTATAAGGACAAAGGAGGTTAAGTATGAGAGATTCAGTTCATCTTACTGGCCCCATTTTAATATCCAGTTAACAAAGAAGCTGGATGCTTCAAGAGTCTTTACAGAGATAATATCTCATATCAAAGGTGGTTTGGGATCCATAGAAGCAGGTGATGGTAAACTCACCCGCGAGGACTATGTTCAATTGTCAGAGGGCCGGACTTCCAATTTAAGCAAACAAAAGAGAGAAGAAATATATGATATATTTCAGGCTTATGAAAAAATGAAGATGGAAAATGGTGATTTTGATCTGGCTGATTTTGTAATTGATCTTCACCGCCGTCTGAGGAGTGAAAAGTATGGGGGTGATCAAATGGACTTTGTTTATATAGATGAGGTTCAAGATCTTACAATCAGTCAAATTGCTCTTTTCAAACATATGTGCAGCAATGTTGAAGAGGGTTTCATTTTTTCTGGTGATACAGCACAGACAATTGCAAGGGGTATTGATTTTAGGTTCCAAGACATACGACATCTGTTCCACAACAAGTTTGTGTTGGAATCAAGAAGCAATAAGCTTGAAGAAAGAAAAGAAAAAGGACAAATTTCAAAAATGTTCCATTTGACTCAAAATTTCCGTACCCATACTGGTGTACTGAAGTTATCACAGAGCATTGTTGAAGTAATTTATCGTTTTTTCCCCCACTATATTGATGTTTTAAAACCTGAAACCAGTCTTATATATGGGGAAGCTCCGGTTTTGCTTAAATCTGGAGAAAATGAAAATGCAATCATAAAATTATTTGGAAATTGTGCAACTGGTAGTGGAAATATAGTTGGCTGTGGCGCAGAGCAGGTTATTTTGGTGCGAGATGATGCTGCTAGGAAAGAAGTTTCCATGTTTGTCGGGAAGCATGCTCTTGTCCTGACCATTGTGGAGTGCAAGGGCCTCGAGTTCATGGACGTACTCTTGTATAACTTTTTTGGCTCATCACCATTGAAAAATCAATGGAGGGTAATATATGATTACATGAAGGAAGAAGATTTGCTTGACTCAACATTACCTCAGCGGTTTCCAAGTTTCAATGAAGCCAAGCACAACATCTTATGCTCTGAACTGAAGCAATTATATGTAGCTGTTACTCGTACGAGACAGAGATTGTGGATTTGTGAGAATGTAGAAGAGCTCTCCAAACCTATGTTTGACTATTGGAAGAAGAAATGTCTTGTACAGGTTAGGCAATTGGATGATTCACTTGCACAGGCAATGCAAGTTGCAAGCAGTCCAGAGGAGTGGAAATCACAGGGCATAAAGCTTTATCATGAACATAACTATGAAATGGCCATAATATGCTTTCAAAGAGCTGGTGATACGTATTGGGAAAGAAGTTCCAAAGCTGCCAATCTTAAAGCTATGGCTGACCGTATGCGAACTTCAAATCCTGACAAGGCCAATTCCATTCTTAGGGAAGCTGCTGAAATATTTGATGATTTAGGCAAGGCAGATTCTGCTGCCAGATGTTTCTCTGATTTGGGCGATTATGAAAGAGCAGCTTGGATTTATATGGATAAAGGTGGCATGTCTGATCTGGAAAGAGCTGCAGAATGTTTTTCTCTAGCAGGATGCTACAAAGATGCTGCAGATGCGTATGCTAAGGGCAATTTTTTCTCCGAGTGTCTCACTGTTTGTGCCAAAGGAAAACTGTTTGAAATGGGTTTGCAATACATCAATTATTGGAAAAAGCATGCAACAGAGGACTGTGTTGTGGCTAGACGAGGTGAAGGAATAGATAAAATTGAACAAGAATTTCTAGAGAGCTGCGCACTTCACTATTATGAGTTGAAAGATAACAGATCCATGATGAAATTTGTTAATGCTTTTGATTCTATAATTTTGATGCGGAACTTTTTGAAGAAGTTAGATAGCCTTGATGAGCTTCTTTTGTTGGAAGAAGAACATGGAAACTATCTTGAAGCTGCCGAAATCGCAAAGCTAAAAGGTGATATTCTACTCGAAGCTGATTTTCTTGAAAAGGCAGGCAAGTCCAGAGAAGCGTCATTACATATTCTATTCTATGTGCTTGCCAATTCTCTTTGGTCAAATGGCAGAAAGGGCTGGCCCATACGACATATTTCACAAAAGAAGGAGCTTTTATCAAAAGCCAAGTCATTTGCTAAGAATAAAACAGAAAGCTTTTATGAACTTGTTTGCACTGAGGTTGATATTTTGTTAAATGAGCAGAGTGACTTGGCTTTGATAAAAAATCATATGAGTGTTTGTCAGAGGCATAAGAGTATTAAAGGTGAATTATTATCGGCTCGAAAAATATTGGATGCTCATATTTCTTCAAGCTCCAATAACTACGGGGATCTTTGTTTTGATTACTTAGGAGTGTGGAGGTTGTATCATAATCTTAGTCCAGTCTATGTTTTACTCATATCCGATGCGGATTGGATTCGGGGTCTGGACAAAAGATGTTTTAAAAAACATGGAAATTTGGTCTCCGTTGATGTTCACCAGCTTGTCTCAGCTGCTCGTAAATATTGGAGTTCAGAAATGCTCTCTGTTGGCATGAAAGTTTTGGACAAGCTTGAAAATCTTTACAACAAGTTTCCAAAGAAGAATGCTGATCCAGTGTTTTGCCAAAGCAGGTGCCTTACCCATATTTGTGAGGTCTCAGTATATCTTTTGCAATCAAAATGTTTGAAGCTAAGGGATCAAGATACGGAGAGATTGCAGAGACGTGTAAAGTTTTCAACTGAGAGTGTTGTTACGAACATATTTCCTATGGATTGGAGGAGTTCATTGAAGGAGAATATGATTTCTCTCAGAAGAACTGATGCTCTAAAGAATGCGCTGGAACAAGTAATAGTTGAGTATACTAGCTCCAAGACGGAGCTGTCTTTTGGGCAAATTGGAAGGCTTGTAATGGTTATTCTCGGGTCCGGTAAGCTGAATAGTGAACTATACGAGAAGCTTGTGGAAAAACTGGACCGCCACCAGCCATGGGAGGAGTTCATTGAGAATCTCTGTGGGAATATTGGCCCTGGAAACAGCAGTCAAGAACCGAGAGAGGTGTCTGTAATGTTGAAGTTTTGTGATGCTTTGGTTGATACTTATAATGTGAACTGGAGGGTTGTTAATGATTACATATCACCTGGATGCTTTTTGTACCTTGTGGAGCGCCTTGTGATTTGGGCAACTTGCTTCAAGGGTTATGCTATCACTACAAGTTCTTGCTTTATTGAGTGGCTGATATACCAAGAAGAAGATGCCGACGTAAGTTCCATAGTTGCTGATGTGCAACCATCTTTGGTTGCAATCCTTAATGTAGTTCGGGAGTGTGTTTTTAATAAGAGGGATATGGTTGATTGGATTAAAAAGACCAATGAAAATTGGAAGAACTATTATTCGCAGCTCATATTGAGATTTGTTGTTGTGTTATGCTTGGTTTATGTGAATTTTGGTACGGGTCAAGATATACTCTATGATTTGCTGGGGAGGGGCTTTATCACTGAGCAGCTACCATGGGAATTTTATGACGCCCTTAAGAGGAGGAGGATACACAAATCTTTTAGTATAAATGTGAGTGTGCTTGCTGCAGCTTTTCAGAAGATCAGTAATACTTTGGTAATTGCAAGTTTCGGGTCCGATTGTTCAAGGTTCTTATGTTCAGATGCCATATTTGTTGACATGAAGGCCAACCGTTCCAGGGATGACATACTGAGGAAATTGTTTCCTAAACCACATGTACTACAAGCTTCCCAAGATACATCTGTTGAATCAGGAGCCAATAGTTCTAAGATCCTGCCATCGAACTCAGATGTGGTGGAACCATTAGAGACTGGTGATGCTGGGGGCGTGGCCAGTCACTCTATAGGTGAGAAACATTGCACAGATATGCCTTCAACTGCTACTTCTAAGCCTCAACCAATTTCAAGCTCAGCCTCTCAACCAAAGGCTTCCGATACTCAAATTCCCTCTAATCCAGAGCCCAAAGAGACTGTACCAGATCCTAATGCAGAGAAGGCAGATGCAAGTGCTAGTTCTGTTCAAGGCACTGAGGCATCAAATCAAGTTGCAATCTCCCCCCAATATTCCTCTCAAAAACTAGTGATCGATGAGACTATTTCAACCAGTCCGATTGACAAAGAGTCTCATACAGTTATAGATACAACTCCTCAATCAGAGGTTCTTGAGACACAAGTTGCCTCTACTTCAGAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

2612

Amino Acids

297.38

Weight (kDa)

5.9

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 2081, 2291, 3635, 6732
AarI CACCTGC 2 cut(s) 3770, 6252
AasI GACNNNNNNGTC 1 cut(s) 6511
Acc16I TGCGCA 1 cut(s) 5434
Acc36I ACCTGC 3 cut(s) 3770, 4456, 6252
AccB1I GGYRCC 1 cut(s) 6264
AccB7I CCANNNNNTGG 1 cut(s) 1103
AccI GTMKAC 2 cut(s) 1600, 6491
AccII CGCG 2 cut(s) 324, 3801
AccIII TCCGGA 1 cut(s) 605
AciI CCGC 8 cut(s) 324, 849, 3799, 3949, 4681, 5512, 6059, 6607
AclI AACGTT 1 cut(s) 22
AcoI YGGCCR 4 cut(s) 2502, 2954, 4953, 7476
AcuI CTGAAG 8 cut(s) 240, 1482, 2672, 2699, 3264, 4289, 4751, 7815
AcyI GRCGYC 1 cut(s) 7155
AdeI CACNNNGTG 1 cut(s) 3527
AflII CTTAAG 1 cut(s) 7160
AflIII ACRYGT 4 cut(s) 600, 3328, 6355, 7360
AhdI GACNNNNNGTC 1 cut(s) 7765
AhlI ACTAGT 1 cut(s) 7723
AjiI CACGTC 1 cut(s) 6356
AjuI GAANNNNNNNTTGG 2 cut(s) 962, 994
AloI GAACNNNNNNTCC 4 cut(s) 1371, 1403, 5035, 5067
Alw21I GWGCWC 5 cut(s) 175, 641, 1039, 1907, 4800
Alw44I GTGCAC 2 cut(s) 637, 1035
AlwNI CAGNNNCTG 3 cut(s) 1103, 2176, 5120
Ama87I CYCGRG 3 cut(s) 168, 4562, 6551
Aor13HI TCCGGA 1 cut(s) 605
ApaLI GTGCAC 2 cut(s) 637, 1035
ArsI GACNNNNNNTTYG 4 cut(s) 2917, 2949, 5762, 5794
Asp700I GAANNNNTTC 4 cut(s) 99, 111, 999, 2737
AspLEI GCGC 4 cut(s) 4460, 5435, 6469, 6798
AsuC2I CCSGG 2 cut(s) 698, 2977
AsuII TTCGAA 1 cut(s) 3558
AvaI CYCGRG 3 cut(s) 168, 4562, 6551
AvaII GGWCC 9 cut(s) 417, 818, 1441, 2066, 2446, 2925, 6555, 6604, 7260
BaeGI GKGCMC 3 cut(s) 641, 904, 1039
BaeI ACNNNNGTAYC 2 cut(s) 7374, 7407
BalI TGGCCA 4 cut(s) 2504, 2956, 4955, 7478
BamHI GGATCC 1 cut(s) 3767
BanI GGYRCC 1 cut(s) 6264
BanII GRGCYC 3 cut(s) 1907, 4800, 7608
BarI GAAGNNNNNNTAC 8 cut(s) 2655, 2687, 3927, 3959, 5029, 5061, 5655, 5687
BbsI GAAGAC 2 cut(s) 63, 2496
Bbv12I GWGCWC 5 cut(s) 175, 641, 1039, 1907, 4800
BbvCI CCTCAGC 1 cut(s) 4677
BccI CCATC 9 cut(s) 683, 2111, 2583, 3032, 3509, 3779, 3895, 6928, 7432
BceAI ACGGC 1 cut(s) 3936
BcgI CGANNNNNNTGC 2 cut(s) 4543, 4577
BciVI GTATCC 1 cut(s) 7167
BclI TGATCA 1 cut(s) 3979
BcnI CCSGG 2 cut(s) 698, 2977
BcuI ACTAGT 1 cut(s) 7723
BfmI CTRYAG 8 cut(s) 883, 1583, 2168, 2852, 5211, 5250, 7212, 7488
BfoI RGCGCY 1 cut(s) 6799
BfrI CTTAAG 1 cut(s) 7160
BfuAI ACCTGC 3 cut(s) 3770, 4456, 6252
BfuI GTATCC 1 cut(s) 7167
BglII AGATCT 2 cut(s) 2832, 4015
BlpI GCTNAGC 1 cut(s) 7555
Bme18I GGWCC 9 cut(s) 417, 818, 1441, 2066, 2446, 2925, 6555, 6604, 7260
BmeRI GACNNNNNGTC 1 cut(s) 7765
BmeT110I CYCGRG 3 cut(s) 168, 4562, 6551
BmgBI CACGTC 1 cut(s) 6356
BmrI ACTGGG 1 cut(s) 759
BmuI ACTGGG 1 cut(s) 759
BpiI GAAGAC 2 cut(s) 63, 2496
BpmI CTGGAG 5 cut(s) 322, 807, 2639, 4404, 6763
Bpu10I CCTNAGC 3 cut(s) 4677, 5265, 6323
Bpu1102I GCTNAGC 1 cut(s) 7555
Bpu14I TTCGAA 1 cut(s) 3558
BpuEI CTTGAG 2 cut(s) 2770, 7829
BpuMI CCSGG 2 cut(s) 698, 2977
Bsa29I ATCGAT 1 cut(s) 7731
BsaAI YACGTR 2 cut(s) 1577, 4986
BsaBI GATNNNNATC 1 cut(s) 3918
BsaHI GRCGYC 1 cut(s) 7155
BsaI GGTCTC 4 cut(s) 2692, 3620, 6118, 6292
BsaWI WCCGGW 3 cut(s) 605, 4366, 6557
BsaXI ACNNNNNCTCC 2 cut(s) 3638, 3668
Bse3DI GCAATG 5 cut(s) 1861, 2796, 4066, 4884, 7501
Bse8I GATNNNNATC 1 cut(s) 3918
BseAI TCCGGA 1 cut(s) 605
BseCI ATCGAT 1 cut(s) 7731
BseJI GATNNNNATC 1 cut(s) 3918
BseMI GCAATG 5 cut(s) 1861, 2796, 4066, 4884, 7501
BseRI GAGGAG 8 cut(s) 1126, 3973, 4916, 6424, 6638, 7180, 7183, 7782
BseSI GKGCMC 3 cut(s) 641, 904, 1039
BseYI CCCAGC 3 cut(s) 1540, 7108, 7466
BsgI GTGCAG 2 cut(s) 1734, 4075
Bsh1236I CGCG 2 cut(s) 324, 3801
BshNI GGYRCC 1 cut(s) 6264
BshVI ATCGAT 1 cut(s) 7731
BsiHKAI GWGCWC 5 cut(s) 175, 641, 1039, 1907, 4800
BsiHKCI CYCGRG 3 cut(s) 168, 4562, 6551
BsiSI CCGG 6 cut(s) 606, 697, 2977, 3829, 4367, 6558
BsiWI CGTACG 1 cut(s) 4757
BslFI GGGAC 5 cut(s) 727, 841, 2308, 2412, 2852
BsmBI CGTCTC 1 cut(s) 6346
BsmFI GGGAC 5 cut(s) 727, 841, 2308, 2412, 2852
BsmI GAATGC 7 cut(s) 181, 245, 1241, 1565, 1953, 6241, 6469
Bso31I GGTCTC 4 cut(s) 2692, 3620, 6118, 6292
BsoBI CYCGRG 3 cut(s) 168, 4562, 6551
Bsp119I TTCGAA 1 cut(s) 3558
Bsp1286I GDGCHC 7 cut(s) 175, 641, 904, 1039, 1907, 4800, 7608
Bsp13I TCCGGA 1 cut(s) 605
Bsp1407I TGTACA 2 cut(s) 2178, 4840
Bsp1720I GCTNAGC 1 cut(s) 7555
Bsp19I CCATGG 2 cut(s) 6617, 7139
BspACI CCGC 8 cut(s) 324, 849, 3799, 3949, 4681, 5512, 6059, 6607
BspDI ATCGAT 1 cut(s) 7731
BspEI TCCGGA 1 cut(s) 605
BspFNI CGCG 2 cut(s) 324, 3801
BspHI TCATGA 3 cut(s) 3087, 3451, 4933
BspMAI CTGCAG 4 cut(s) 2172, 5215, 5254, 7216
BspMI ACCTGC 3 cut(s) 3770, 4456, 6252
BspQI GCTCTTC 2 cut(s) 2743, 4788
BspT104I TTCGAA 1 cut(s) 3558
BspT107I GGYRCC 1 cut(s) 6264
BspTI CTTAAG 1 cut(s) 7160
BspTNI GGTCTC 4 cut(s) 2692, 3620, 6118, 6292
BsrDI GCAATG 5 cut(s) 1861, 2796, 4066, 4884, 7501
BsrGI TGTACA 2 cut(s) 2178, 4840
BssNAI GTATAC 1 cut(s) 6492
BssNI GRCGYC 1 cut(s) 7155
BssT1I CCWWGG 4 cut(s) 2442, 2505, 6617, 7139
Bst1107I GTATAC 1 cut(s) 6492
Bst6I CTCTTC 6 cut(s) 1188, 2097, 2271, 2743, 4062, 4788
BstACI GRCGYC 1 cut(s) 7155
BstAFI CTTAAG 1 cut(s) 7160
BstAPI GCANNNNNTGC 2 cut(s) 215, 5120
BstAUI TGTACA 2 cut(s) 2178, 4840
BstBAI YACGTR 2 cut(s) 1577, 4986
BstBI TTCGAA 1 cut(s) 3558
BstDSI CCRYGG 2 cut(s) 6617, 7139
BstENI CCTNNNNNAGG 1 cut(s) 3634
BstFNI CGCG 2 cut(s) 324, 3801
BstH2I RGCGCY 1 cut(s) 6799
BstHHI GCGC 4 cut(s) 4460, 5435, 6469, 6798
BstMWI GCNNNNNNNGC 8 cut(s) 215, 761, 802, 5120, 5255, 5597, 5724, 7640
BstNSI RCATGY 9 cut(s) 604, 768, 1808, 3332, 3357, 4529, 5194, 5360, 7364
BstSFI CTRYAG 8 cut(s) 883, 1583, 2168, 2852, 5211, 5250, 7212, 7488
BstSLI GKGCMC 3 cut(s) 641, 904, 1039
BstSNI TACGTA 2 cut(s) 1577, 4986
BstUI CGCG 2 cut(s) 324, 3801
BstV2I GAAGAC 2 cut(s) 63, 2496
BstXI CCANNNNNNTGG 3 cut(s) 649, 2935, 4905
BstZ17I GTATAC 1 cut(s) 6492
Bsu15I ATCGAT 1 cut(s) 7731
BsuI GTATCC 1 cut(s) 7167
BsuTUI ATCGAT 1 cut(s) 7731
BtgI CCRYGG 2 cut(s) 6617, 7139
BtrI CACGTC 1 cut(s) 6356
BtsI GCAGTG 2 cut(s) 3240, 3373
BveI ACCTGC 3 cut(s) 3770, 4456, 6252
CaiI CAGNNNCTG 3 cut(s) 1103, 2176, 5120
CciI TCATGA 3 cut(s) 3087, 3451, 4933
CfoI GCGC 4 cut(s) 4460, 5435, 6469, 6798
ClaI ATCGAT 1 cut(s) 7731
CseI GACGC 2 cut(s) 5655, 7163
CsiI ACCWGGT 1 cut(s) 87
CspCI CAANNNNNGTGG 2 cut(s) 2946, 2981
DraI TTTAAA 3 cut(s) 490, 4332, 6094
DraIII CACNNNGTG 1 cut(s) 3527
DrdI GACNNNNNNGTC 1 cut(s) 6511
DriI GACNNNNNGTC 1 cut(s) 7765
DseDI GACNNNNNNGTC 1 cut(s) 6511
EaeI YGGCCR 4 cut(s) 2502, 2954, 4953, 7476
Eam1104I CTCTTC 6 cut(s) 1188, 2097, 2271, 2743, 4062, 4788
Eam1105I GACNNNNNGTC 1 cut(s) 7765
EarI CTCTTC 6 cut(s) 1188, 2097, 2271, 2743, 4062, 4788
Ecl136II GAGCTC 2 cut(s) 1905, 4798
Eco105I TACGTA 2 cut(s) 1577, 4986
Eco130I CCWWGG 4 cut(s) 2442, 2505, 6617, 7139
Eco147I AGGCCT 1 cut(s) 2441
Eco24I GRGCYC 3 cut(s) 1907, 4800, 7608
Eco31I GGTCTC 4 cut(s) 2692, 3620, 6118, 6292
Eco32I GATATC 2 cut(s) 34, 286
Eco47I GGWCC 9 cut(s) 417, 818, 1441, 2066, 2446, 2925, 6555, 6604, 7260
Eco53kI GAGCTC 2 cut(s) 1905, 4798
Eco57I CTGAAG 8 cut(s) 240, 1482, 2672, 2699, 3264, 4289, 4751, 7815
Eco88I CYCGRG 3 cut(s) 168, 4562, 6551
EcoICRI GAGCTC 2 cut(s) 1905, 4798
EcoNI CCTNNNNNAGG 1 cut(s) 3634
EcoO109I RGGNCCY 3 cut(s) 417, 818, 4558
EcoRI GAATTC 2 cut(s) 1643, 3058
EcoRV GATATC 2 cut(s) 34, 286
EcoT14I CCWWGG 4 cut(s) 2442, 2505, 6617, 7139
EcoT22I ATGCAT 1 cut(s) 1953
EcoT38I GRGCYC 3 cut(s) 1907, 4800, 7608
ErhI CCWWGG 4 cut(s) 2442, 2505, 6617, 7139
Esp3I CGTCTC 1 cut(s) 6346
FalI AAGNNNNNCTT 6 cut(s) 3431, 3463, 4644, 4676, 5149, 5181
FaqI GGGAC 5 cut(s) 727, 841, 2308, 2412, 2852
FauI CCCGC 1 cut(s) 3806
FauNDI CATATG 2 cut(s) 4050, 5880
FbaI TGATCA 1 cut(s) 3979
FblI GTMKAC 2 cut(s) 1600, 6491
FriOI GRGCYC 3 cut(s) 1907, 4800, 7608
FspI TGCGCA 1 cut(s) 5434
GlaI GCGC 4 cut(s) 4459, 5434, 6468, 6797
GsaI CCCAGC 3 cut(s) 1544, 7112, 7470
GsuI CTGGAG 5 cut(s) 322, 807, 2639, 4404, 6763
HaeII RGCGCY 1 cut(s) 6799
HapII CCGG 6 cut(s) 606, 697, 2977, 3829, 4367, 6558
HgaI GACGC 2 cut(s) 5655, 7163
HhaI GCGC 4 cut(s) 4460, 5435, 6469, 6798
Hin1I GRCGYC 1 cut(s) 7155
Hin6I GCGC 4 cut(s) 4458, 5433, 6467, 6796
HinP1I GCGC 4 cut(s) 4458, 5433, 6467, 6796
HincII GTYRAC 4 cut(s) 520, 1188, 3702, 7303
HindII GTYRAC 4 cut(s) 520, 1188, 3702, 7303
HindIII AAGCTT 9 cut(s) 1076, 1885, 2681, 4187, 4925, 5803, 6200, 6587, 7371
HpaI GTTAAC 2 cut(s) 1188, 3702
HpaII CCGG 6 cut(s) 606, 697, 2977, 3829, 4367, 6558
Hpy99I CGWCG 2 cut(s) 3032, 6893
HpyCH4IV ACGT 8 cut(s) 22, 1167, 1576, 2817, 4575, 4985, 6355, 6891
HpyF10VI GCNNNNNNNGC 8 cut(s) 215, 761, 802, 5120, 5255, 5597, 5724, 7640
HpySE526I ACGT 8 cut(s) 22, 1167, 1576, 2817, 4575, 4985, 6355, 6891
Hsp92I GRCGYC 1 cut(s) 7155
HspAI GCGC 4 cut(s) 4458, 5433, 6467, 6796
Kpn2I TCCGGA 1 cut(s) 605
Ksp22I TGATCA 1 cut(s) 3979
KspAI GTTAAC 2 cut(s) 1188, 3702
LguI GCTCTTC 2 cut(s) 2743, 4788
MabI ACCWGGT 1 cut(s) 87
MaeII ACGT 8 cut(s) 22, 1167, 1576, 2817, 4575, 4985, 6355, 6891
MfeI CAATTG 7 cut(s) 1728, 1754, 3227, 3596, 3815, 4104, 4853
MhlI GDGCHC 7 cut(s) 175, 641, 904, 1039, 1907, 4800, 7608
MlsI TGGCCA 4 cut(s) 2504, 2956, 4955, 7478
MluNI TGGCCA 4 cut(s) 2504, 2956, 4955, 7478
MlyI GAGTC 9 cut(s) 749, 974, 1520, 2630, 2648, 3735, 4231, 4658, 7775
MmeI TCCRAC 5 cut(s) 1088, 2675, 3139, 4149, 5538
Mox20I TGGCCA 4 cut(s) 2504, 2956, 4955, 7478
Mph1103I ATGCAT 1 cut(s) 1953
MroI TCCGGA 1 cut(s) 605
MroXI GAANNNNTTC 4 cut(s) 99, 111, 999, 2737
MscI TGGCCA 4 cut(s) 2504, 2956, 4955, 7478
MslI CAYNNNNRTG 8 cut(s) 1209, 4260, 4944, 5445, 5883, 6279, 6772, 7511
Msp20I TGGCCA 4 cut(s) 2504, 2956, 4955, 7478
MspA1I CMGCKG 2 cut(s) 4681, 6143
MspCI CTTAAG 1 cut(s) 7160
MspI CCGG 6 cut(s) 606, 697, 2977, 3829, 4367, 6558
MunI CAATTG 7 cut(s) 1728, 1754, 3227, 3596, 3815, 4104, 4853
Mva1269I GAATGC 7 cut(s) 181, 245, 1241, 1565, 1953, 6241, 6469
MvnI CGCG 2 cut(s) 324, 3801
MwoI GCNNNNNNNGC 8 cut(s) 215, 761, 802, 5120, 5255, 5597, 5724, 7640
NciI CCSGG 2 cut(s) 698, 2977
NcoI CCATGG 2 cut(s) 6617, 7139
NdeI CATATG 2 cut(s) 4050, 5880
NmuCI GTSAC 8 cut(s) 436, 1099, 1244, 1913, 3221, 3319, 5855, 7481
NsbI TGCGCA 1 cut(s) 5434
NsiI ATGCAT 1 cut(s) 1953
NspI RCATGY 9 cut(s) 604, 768, 1808, 3332, 3357, 4529, 5194, 5360, 7364
NspV TTCGAA 1 cut(s) 3558
PaeI GCATGC 3 cut(s) 1808, 4529, 5360
PaeR7I CTCGAG 2 cut(s) 168, 4562
PagI TCATGA 3 cut(s) 3087, 3451, 4933
PaqCI CACCTGC 2 cut(s) 3770, 6252
PceI AGGCCT 1 cut(s) 2441
PciI ACATGT 3 cut(s) 600, 3328, 7360
PciSI GCTCTTC 2 cut(s) 2743, 4788
PctI GAATGC 7 cut(s) 181, 245, 1241, 1565, 1953, 6241, 6469
PdmI GAANNNNTTC 4 cut(s) 99, 111, 999, 2737
Pfl23II CGTACG 1 cut(s) 4757
PflFI GACNNNGTC 1 cut(s) 2124
PflMI CCANNNNNTGG 1 cut(s) 1103
PfoI TCCNGGA 1 cut(s) 696
PleI GAGTC 9 cut(s) 748, 973, 1519, 2629, 2647, 3734, 4231, 4658, 7774
PpsI GAGTC 9 cut(s) 748, 973, 1519, 2629, 2647, 3734, 4231, 4658, 7774
Ppu21I YACGTR 2 cut(s) 1577, 4986
PpuMI RGGWCCY 2 cut(s) 417, 818
PscI ACATGT 3 cut(s) 600, 3328, 7360
PsiI TTATAA 4 cut(s) 2081, 2291, 3635, 6732
Psp124BI GAGCTC 2 cut(s) 1907, 4800
Psp1406I AACGTT 1 cut(s) 22
Psp5II RGGWCCY 2 cut(s) 417, 818
PspFI CCCAGC 3 cut(s) 1540, 7108, 7466
PspLI CGTACG 1 cut(s) 4757
PspPPI RGGWCCY 2 cut(s) 417, 818
PspXI VCTCGAGB 2 cut(s) 168, 4562
PstI CTGCAG 4 cut(s) 2172, 5215, 5254, 7216
PstNI CAGNNNCTG 3 cut(s) 1103, 2176, 5120
PsyI GACNNNGTC 1 cut(s) 2124
PvuII CAGCTG 1 cut(s) 6143
RseI CAYNNNNRTG 8 cut(s) 1209, 4260, 4944, 5445, 5883, 6279, 6772, 7511
SacI GAGCTC 2 cut(s) 1907, 4800
SapI GCTCTTC 2 cut(s) 2743, 4788
SchI GAGTC 9 cut(s) 749, 974, 1520, 2630, 2648, 3735, 4231, 4658, 7775
SduI GDGCHC 7 cut(s) 175, 641, 904, 1039, 1907, 4800, 7608
SexAI ACCWGGT 1 cut(s) 87
SfcI CTRYAG 8 cut(s) 883, 1583, 2168, 2852, 5211, 5250, 7212, 7488
Sfr274I CTCGAG 2 cut(s) 168, 4562
SfuI TTCGAA 1 cut(s) 3558
SinI GGWCC 9 cut(s) 417, 818, 1441, 2066, 2446, 2925, 6555, 6604, 7260
SlaI CTCGAG 2 cut(s) 168, 4562
SmiMI CAYNNNNRTG 8 cut(s) 1209, 4260, 4944, 5445, 5883, 6279, 6772, 7511
SmlI CTYRAG 5 cut(s) 168, 2749, 4562, 7160, 7808
SmoI CTYRAG 5 cut(s) 168, 2749, 4562, 7160, 7808
SnaBI TACGTA 2 cut(s) 1577, 4986
SpeI ACTAGT 1 cut(s) 7723
SphI GCATGC 3 cut(s) 1808, 4529, 5360
SseBI AGGCCT 1 cut(s) 2441
SsiI CCGC 8 cut(s) 324, 849, 3799, 3949, 4681, 5512, 6059, 6607
SspI AATATT 8 cut(s) 131, 1671, 2826, 5094, 5940, 6155, 6652, 7709
SstI GAGCTC 2 cut(s) 1907, 4800
StuI AGGCCT 1 cut(s) 2441
StyI CCWWGG 4 cut(s) 2442, 2505, 6617, 7139
TaiI ACGT 8 cut(s) 25, 1170, 1579, 2820, 4578, 4988, 6358, 6894
TaqI TCGA 9 cut(s) 169, 2206, 2418, 3558, 4563, 5625, 5932, 7427, 7731
TatI WGTACW 4 cut(s) 2178, 4264, 4840, 7363
TauI GCSGC 1 cut(s) 327
TseFI GTSAC 8 cut(s) 436, 1099, 1244, 1913, 3221, 3319, 5855, 7481
Tsp45I GTSAC 8 cut(s) 436, 1099, 1244, 1913, 3221, 3319, 5855, 7481
TspGWI ACGGA 5 cut(s) 2636, 4238, 6106, 6353, 6521
Tth111I GACNNNGTC 1 cut(s) 2124
Van91I CCANNNNNTGG 1 cut(s) 1103
Vha464I CTTAAG 1 cut(s) 7160
VneI GTGCAC 2 cut(s) 637, 1035
VpaK11BI GGWCC 9 cut(s) 417, 818, 1441, 2066, 2446, 2925, 6555, 6604, 7260
XagI CCTNNNNNAGG 1 cut(s) 3634
XbaI TCTAGA 4 cut(s) 943, 2585, 2881, 5422
XceI RCATGY 9 cut(s) 604, 768, 1808, 3332, 3357, 4529, 5194, 5360, 7364
XcmI CCANNNNNNNNNTGG 1 cut(s) 1104
XhoI CTCGAG 2 cut(s) 168, 4562
XmiI GTMKAC 2 cut(s) 1600, 6491
XmnI GAANNNNTTC 4 cut(s) 99, 111, 999, 2737
Zsp2I ATGCAT 1 cut(s) 1953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.