Rorug03G0223800

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000223
Physical Location & Seq
Forward (+)
20452982 .. 20459310
6329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0223800.1

Sequence Viewer

Length: 1887 bp
ATGCACTTTCCCCACTTACTAAGCTTCACTTCCACACCTGCCATGCACCTTTCTCAGTTTCCCAGTCACCACAGCCAGTTATCTGGCCATGTTCAGAGTCCCCACTTGGGTAAAACAAGACCCAGAAGTCAACAACCTCCGATTTCCACTTTAGGATGTTACAATGTTAAAGACTACTTGCAGACTCAAACACCCAGAAGGCAATTGAATCAAGGAAGTGGGTTGAGATATTCGAATTCGAAAAATTGGAGCTTTGCAGTGAGGTCCAGTTCAACATTGAGCGTAGATAAAGTGTTGGAGAGTGATGGAAAGGCAGGTGGGAAGAGTAAATATGATGCCATTGTTATAGGGTCAGGGATTGGAGGGTTGGTTGCAGCTACACAGTTGGCTGTGAAGGGTGCCAAGGTTTTGGTTTTGGAGAAGTATGTGATTCCTGGTGGGAGTTCTGGGTACTATGAGAGGGATGGTTATACTTTCGATGTTGGGTCTTCTGTCATGTTCGGTTTCGGCGATAAGGGCAATCTAAACTTGATAACACAAGCATTGGCAGCAGTGGGTTGTGAGATGCAGGTGATACCTGATCCGACCACTGTCCATTACCATCTACCGGATAATCTTTCAGTTCGAGTACACAGAGAATACAGTGAATTTATTTCAGAACTTACTGCTAAATTTCCCCATGAAAAGAATGGGATCCTAAAATTCTTCGGTGAATGTTGGAAGGTTTTCAATGCCTTGAACTCTTTGGAACTGAAGTCACTCGAGGAGCCTATCTATCTTTTTGGACAGTTCTTTCAGAAGCCTCTTGAATGCTTGACACTAGCCTATTATTTGCCTCAAAATGCTGGGGACATAGCTCGTAGGTACATTCAGGATCCCCAACTGTTGTCTTTCATTGATGCGGAGTGTTTTATTGTGAGCACAGTCAAGGCTTTGCAGACACCGATGATCAATGCGAGCATGGTGATGTGTGACAGGCATTATGGTGGAATTAACTACCCTGTTGGTGGCGTTGGGGGAATTGCAAAGTCCTTGGCGAAAGGTCTGGTGGAGCAGGGCAGTGAGATACTTTACAAGGCCAATGTTACTGGCATCATACTTGATCAGGGCAGAGCTGTTGGAGTAAGGCTTTCAGACAAGAGGGAATTTTTTGCCAAAACCATAATATCAAATGCTACAAGATGGGATACCTTTGGAAAGCTGTTAAAAGAAGAAGACCTTCCAAAAGAAGAGGAAAACTTTCAGAAAGTTTATGTTAAGGCACCATCTTTTCTTTCCATACACATGGGGGTGAAATCTGATGTTCTGCCACCAGATACAGATTGCCACCATTTTGTGCTTGAGGATGATTGGGCAAGGTTAGAGGAGCCATACGGAAGTATATTTTTAAGCATTCCAACTATTCTTGATCCATCGTTATGCCCAGAAGGGCGGCATATTCTTCACATATTTACAACCTCTTCCATTGAGGACTGGGAGGGACTCTCTCGAAAGGACTATGAAGCAAAGAAGGAGCGTGTGGCAGATGAAATCATTAGCAGATTAGAGAAAAAACTCTTTCCAGGGCTCAAATCATCCATCGTTTTTAAGGAGGTGGGAACGCCAAAGACACACAGGCGGTACCTGGCTCGTGAACAGGGTACTTATGGACCATTACCACGCAGAACTCCTAAGGGCTTATTGGGAATGCCATTCAATACAACAGCCATAGATGGTCTTTACTGTGTTGGTGATAGCTGCTTTCCGGGACAAGGTGTTATAGCTGTATCCTTCTCAGGAGTAATGTGTGCTCATCGTGTAGCTGCTGATATAGGTCTTGAGAAGAAGTCTCCAGTACTGGATGCTGCCCTTCTTGGACTACTTGGGTGGTTTAGGACATTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

628

Amino Acids

69.41

Weight (kDa)

8.14

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 112 - 393 5.7e-08 FAD dependent oxidoreductase
NAD_binding_8 PF13450 115 - 176 2.1e-13 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 120 - 600 4.9e-19 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 46, 305, 559
AasI GACNNNNNNGTC 1 cut(s) 126
Acc36I ACCTGC 3 cut(s) 46, 305, 559
Acc65I GGTACC 1 cut(s) 1620
AccB1I GGYRCC 3 cut(s) 398, 1261, 1620
AciI CCGC 3 cut(s) 902, 1432, 1618
AclWI GGATC 6 cut(s) 575, 688, 701, 869, 882, 1403
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 5 cut(s) 235, 647, 671, 701, 1145
AcuI CTGAAG 1 cut(s) 773
AfaI GTAC 6 cut(s) 452, 630, 866, 1622, 1642, 1836
AfiI CCNNNNNNNGG 4 cut(s) 107, 607, 1007, 1751
AgsI TTSAA 6 cut(s) 208, 273, 730, 739, 809, 1696
AjnI CCWGG 3 cut(s) 433, 1561, 1623
AluBI AGCT 9 cut(s) 24, 252, 377, 857, 1115, 1201, 1737, 1763, 1802
AluI AGCT 9 cut(s) 24, 252, 377, 857, 1115, 1201, 1737, 1763, 1802
Alw21I GWGCWC 2 cut(s) 923, 1792
Alw26I GTCTC 1 cut(s) 1833
AlwI GGATC 6 cut(s) 575, 688, 701, 869, 882, 1403
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 2 cut(s) 85, 1077
ApeKI GCWGC 5 cut(s) 374, 548, 1737, 1802, 1844
ApoI RAATTY 5 cut(s) 235, 647, 671, 701, 1145
Asp700I GAANNNNTTC 3 cut(s) 725, 1218, 1239
Asp718I GGTACC 1 cut(s) 1620
AspS9I GGNCC 2 cut(s) 264, 1649
AsuC2I CCSGG 1 cut(s) 1746
AsuHPI GGTGA 6 cut(s) 59, 583, 722, 976, 1303, 1742
AsuII TTCGAA 2 cut(s) 233, 239
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 2 cut(s) 264, 1649
AxyI CCTNAGG 1 cut(s) 1671
BalI TGGCCA 1 cut(s) 87
BamHI GGATCC 2 cut(s) 693, 874
BanI GGYRCC 3 cut(s) 398, 1261, 1620
BanII GRGCYC 1 cut(s) 1569
BauI CACGAG 1 cut(s) 1629
BbsI GAAGAC 2 cut(s) 480, 1221
Bbv12I GWGCWC 2 cut(s) 923, 1792
BbvI GCAGC 5 cut(s) 386, 560, 1724, 1789, 1831
BccI CCATC 8 cut(s) 299, 458, 609, 1176, 1273, 1420, 1586, 1706
BciT130I CCWGG 3 cut(s) 435, 1563, 1625
BciVI GTATCC 2 cut(s) 1180, 1777
BclI TGATCA 2 cut(s) 948, 1102
BcnI CCSGG 1 cut(s) 1746
BcoDI GTCTC 1 cut(s) 1833
BfaI CTAG 1 cut(s) 821
BfuAI ACCTGC 3 cut(s) 46, 305, 559
BfuI GTATCC 2 cut(s) 1180, 1777
BisI GCNGC 6 cut(s) 375, 549, 1433, 1738, 1803, 1845
BlsI GCNGC 6 cut(s) 376, 550, 1434, 1739, 1804, 1846
BmcAI AGTACT 1 cut(s) 1836
Bme1390I CCNGG 4 cut(s) 435, 1563, 1625, 1746
Bme18I GGWCC 2 cut(s) 264, 1649
BmeT110I CYCGRG 1 cut(s) 761
BmgT120I GGNCC 2 cut(s) 264, 1649
BmiI GGNNCC 7 cut(s) 400, 695, 768, 876, 1263, 1368, 1622
BmrFI CCNGG 4 cut(s) 435, 1563, 1625, 1746
BmrI ACTGGG 2 cut(s) 57, 1483
BmsI GCATC 5 cut(s) 325, 555, 889, 1101, 1831
BmuI ACTGGG 2 cut(s) 57, 1483
BoxI GACNNNNGTC 1 cut(s) 590
BpiI GAAGAC 2 cut(s) 480, 1221
BplI GAGNNNNNCTC 2 cut(s) 1469, 1501
BpmI CTGGAG 1 cut(s) 1815
Bpu14I TTCGAA 2 cut(s) 233, 239
BpuEI CTTGAG 2 cut(s) 1361, 1838
BpuMI CCSGG 1 cut(s) 1746
BsaJI CCNNGG 3 cut(s) 402, 1032, 1562
BsaWI WCCGGW 1 cut(s) 607
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 607, 1007, 1751
Bse1I ACTGG 7 cut(s) 63, 76, 267, 1093, 1478, 1832, 1842
Bse21I CCTNAGG 1 cut(s) 1671
BseBI CCWGG 3 cut(s) 435, 1563, 1625
BseDI CCNNGG 3 cut(s) 402, 1032, 1562
BseGI GGATG 5 cut(s) 161, 469, 1351, 1574, 1846
BseLI CCNNNNNNNGG 4 cut(s) 107, 607, 1007, 1751
BseMII CTCAG 2 cut(s) 68, 1788
BseNI ACTGG 7 cut(s) 63, 76, 267, 1093, 1478, 1832, 1842
BseRI GAGGAG 2 cut(s) 779, 1379
BseXI GCAGC 5 cut(s) 386, 560, 1724, 1789, 1831
BseYI CCCAGC 1 cut(s) 845
BshFI GGCC 2 cut(s) 87, 1079
BshNI GGYRCC 3 cut(s) 398, 1261, 1620
BsiHKAI GWGCWC 2 cut(s) 923, 1792
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 2 cut(s) 608, 1745
BslFI GGGAC 4 cut(s) 84, 863, 1494, 1761
BslI CCNNNNNNNGG 4 cut(s) 107, 607, 1007, 1751
BsmAI GTCTC 1 cut(s) 1833
BsmFI GGGAC 4 cut(s) 84, 863, 1494, 1761
BsmI GAATGC 3 cut(s) 815, 1392, 1692
BsnI GGCC 2 cut(s) 87, 1079
BsoBI CYCGRG 1 cut(s) 761
Bsp119I TTCGAA 2 cut(s) 233, 239
Bsp1286I GDGCHC 3 cut(s) 923, 1569, 1792
Bsp143I GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
BspACI CCGC 3 cut(s) 902, 1432, 1618
BspANI GGCC 2 cut(s) 87, 1079
BspCNI CTCAG 2 cut(s) 67, 1787
BspLI GGNNCC 7 cut(s) 400, 695, 768, 876, 1263, 1368, 1622
BspMI ACCTGC 3 cut(s) 46, 305, 559
BspPI GGATC 6 cut(s) 575, 688, 701, 869, 882, 1403
BspT104I TTCGAA 2 cut(s) 233, 239
BspT107I GGYRCC 3 cut(s) 398, 1261, 1620
BsrI ACTGG 7 cut(s) 63, 76, 267, 1093, 1478, 1832, 1842
BssECI CCNNGG 3 cut(s) 402, 1032, 1562
BssMI GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
BssSI CACGAG 1 cut(s) 1629
BssT1I CCWWGG 2 cut(s) 402, 1032
Bst2BI CACGAG 1 cut(s) 1629
Bst2UI CCWGG 3 cut(s) 435, 1563, 1625
Bst4CI ACNGT 7 cut(s) 384, 592, 644, 789, 885, 925, 1724
Bst6I CTCTTC 3 cut(s) 317, 1224, 1465
BstBI TTCGAA 2 cut(s) 233, 239
BstC8I GCNNGC 1 cut(s) 958
BstDEI CTNAG 4 cut(s) 20, 54, 1671, 1774
BstF5I GGATG 5 cut(s) 161, 469, 1351, 1574, 1846
BstKTI GATC 6 cut(s) 583, 696, 877, 951, 1105, 1411
BstMAI GTCTC 1 cut(s) 1833
BstMBI GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
BstMWI GCNNNNNNNGC 2 cut(s) 516, 548
BstNI CCWGG 3 cut(s) 435, 1563, 1625
BstPAI GACNNNNGTC 1 cut(s) 590
BstSCI CCNGG 4 cut(s) 433, 1561, 1623, 1744
BstV1I GCAGC 5 cut(s) 386, 560, 1724, 1789, 1831
BstV2I GAAGAC 2 cut(s) 480, 1221
BstX2I RGATCY 2 cut(s) 693, 874
BstXI CCANNNNNNTGG 3 cut(s) 83, 409, 1285
BstYI RGATCY 2 cut(s) 693, 874
Bsu36I CCTNAGG 1 cut(s) 1671
BsuI GTATCC 2 cut(s) 1180, 1777
BsuRI GGCC 2 cut(s) 87, 1079
BtsCI GGATG 5 cut(s) 161, 469, 1351, 1574, 1846
BtsI GCAGTG 3 cut(s) 264, 558, 1066
BtsIMutI CAGTG 5 cut(s) 264, 558, 588, 649, 1066
BveI ACCTGC 3 cut(s) 46, 305, 559
Cac8I GCNNGC 1 cut(s) 958
Cfr13I GGNCC 2 cut(s) 264, 1649
Csp6I GTAC 6 cut(s) 451, 629, 865, 1621, 1641, 1835
CviAII CATG 7 cut(s) 43, 89, 496, 680, 961, 1285, 1884
CviQI GTAC 6 cut(s) 451, 629, 865, 1621, 1641, 1835
DdeI CTNAG 4 cut(s) 20, 54, 1671, 1774
DpnI GATC 6 cut(s) 582, 695, 876, 950, 1104, 1410
DpnII GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
DrdI GACNNNNNNGTC 1 cut(s) 126
DseDI GACNNNNNNGTC 1 cut(s) 126
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 3 cut(s) 317, 1224, 1465
EarI CTCTTC 3 cut(s) 317, 1224, 1465
Eco130I CCWWGG 2 cut(s) 402, 1032
Eco24I GRGCYC 1 cut(s) 1569
Eco47I GGWCC 2 cut(s) 264, 1649
Eco57I CTGAAG 1 cut(s) 773
Eco81I CCTNAGG 1 cut(s) 1671
Eco88I CYCGRG 1 cut(s) 761
EcoRI GAATTC 1 cut(s) 235
EcoRII CCWGG 3 cut(s) 433, 1561, 1623
EcoT14I CCWWGG 2 cut(s) 402, 1032
EcoT38I GRGCYC 1 cut(s) 1569
ErhI CCWWGG 2 cut(s) 402, 1032
FaeI CATG 7 cut(s) 46, 92, 499, 683, 964, 1288, 1887
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 1203, 1235
FaqI GGGAC 4 cut(s) 84, 863, 1494, 1761
FatI CATG 7 cut(s) 42, 88, 495, 679, 960, 1284, 1883
FbaI TGATCA 2 cut(s) 948, 1102
Fnu4HI GCNGC 6 cut(s) 375, 549, 1433, 1738, 1803, 1845
FokI GGATG 5 cut(s) 168, 476, 1358, 1561, 1853
FriOI GRGCYC 1 cut(s) 1569
Fsp4HI GCNGC 6 cut(s) 375, 549, 1433, 1738, 1803, 1845
FspBI CTAG 1 cut(s) 821
GluI GCNGC 6 cut(s) 375, 549, 1433, 1738, 1803, 1845
GsaI CCCAGC 1 cut(s) 849
GsuI CTGGAG 1 cut(s) 1815
HaeIII GGCC 2 cut(s) 87, 1079
HapII CCGG 2 cut(s) 608, 1745
Hin1II CATG 7 cut(s) 46, 92, 499, 683, 964, 1288, 1887
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 5 cut(s) 97, 184, 208, 430, 1482
HpaII CCGG 2 cut(s) 608, 1745
HphI GGTGA 6 cut(s) 59, 583, 722, 976, 1303, 1742
Hpy166II GTNNAC 3 cut(s) 131, 631, 1634
Hpy188I TCNGA 8 cut(s) 96, 141, 585, 658, 798, 1135, 1245, 1300
Hpy188III TCNNGA 7 cut(s) 806, 872, 1406, 1488, 1631, 1776, 1817
Hpy8I GTNNAC 3 cut(s) 131, 631, 1634
HpyAV CCTTC 8 cut(s) 192, 388, 715, 1229, 1421, 1504, 1780, 1859
HpyCH4III ACNGT 7 cut(s) 384, 592, 644, 789, 885, 925, 1724
HpyCH4V TGCA 8 cut(s) 4, 46, 181, 257, 374, 568, 937, 1025
HpyF10VI GCNNNNNNNGC 2 cut(s) 516, 548
HpyF3I CTNAG 4 cut(s) 20, 54, 1671, 1774
Hsp92II CATG 7 cut(s) 46, 92, 499, 683, 964, 1288, 1887
KpnI GGTACC 1 cut(s) 1624
Ksp22I TGATCA 2 cut(s) 948, 1102
Kzo9I GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
LmnI GCTCC 5 cut(s) 249, 766, 1051, 1366, 1513
Lsp1109I GCAGC 5 cut(s) 386, 560, 1724, 1789, 1831
LweI GCATC 5 cut(s) 325, 555, 889, 1101, 1831
MaeI CTAG 1 cut(s) 821
MaeIII GTNAC 5 cut(s) 65, 158, 756, 971, 1084
MalI GATC 6 cut(s) 582, 695, 876, 950, 1104, 1410
MboI GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
MboII GAAGA 9 cut(s) 334, 480, 697, 1223, 1226, 1241, 1433, 1452, 1834
MfeI CAATTG 1 cut(s) 203
MflI RGATCY 2 cut(s) 693, 874
MhlI GDGCHC 3 cut(s) 923, 1569, 1792
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 9 cut(s) 203, 235, 244, 647, 671, 701, 990, 1020, 1145
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 3 cut(s) 106, 178, 1476
MmeI TCCRAC 5 cut(s) 276, 608, 698, 1099, 1421
Mox20I TGGCCA 1 cut(s) 87
MroXI GAANNNNTTC 3 cut(s) 725, 1218, 1239
MscI TGGCCA 1 cut(s) 87
MseI TTAA 6 cut(s) 168, 993, 1205, 1257, 1388, 1587
MslI CAYNNNNRTG 6 cut(s) 965, 984, 1283, 1289, 1417, 1882
Msp20I TGGCCA 1 cut(s) 87
MspI CCGG 2 cut(s) 608, 1745
MspR9I CCNGG 4 cut(s) 435, 1563, 1625, 1746
MunI CAATTG 1 cut(s) 203
Mva1269I GAATGC 3 cut(s) 815, 1392, 1692
MvaI CCWGG 3 cut(s) 435, 1563, 1625
MwoI GCNNNNNNNGC 2 cut(s) 516, 548
NciI CCSGG 1 cut(s) 1746
NdeII GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
NlaIII CATG 7 cut(s) 46, 92, 499, 683, 964, 1288, 1887
NlaIV GGNNCC 7 cut(s) 400, 695, 768, 876, 1263, 1368, 1622
NmuCI GTSAC 3 cut(s) 65, 756, 971
NspV TTCGAA 2 cut(s) 233, 239
PaeR7I CTCGAG 1 cut(s) 761
PaqCI CACCTGC 3 cut(s) 46, 305, 559
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PctI GAATGC 3 cut(s) 815, 1392, 1692
PdmI GAANNNNTTC 3 cut(s) 725, 1218, 1239
PfeI GAWTC 2 cut(s) 208, 430
PfoI TCCNGGA 1 cut(s) 1744
PkrI GCNGC 6 cut(s) 376, 550, 1434, 1739, 1804, 1846
PleI GAGTC 3 cut(s) 105, 178, 1476
PpsI GAGTC 3 cut(s) 105, 178, 1476
PshAI GACNNNNGTC 1 cut(s) 590
Psp6I CCWGG 3 cut(s) 433, 1561, 1623
PspFI CCCAGC 1 cut(s) 845
PspGI CCWGG 3 cut(s) 433, 1561, 1623
PspN4I GGNNCC 7 cut(s) 400, 695, 768, 876, 1263, 1368, 1622
PspPI GGNCC 2 cut(s) 264, 1649
PspXI VCTCGAGB 1 cut(s) 761
PsuI RGATCY 2 cut(s) 693, 874
RsaI GTAC 6 cut(s) 452, 630, 866, 1622, 1642, 1836
RsaNI GTAC 6 cut(s) 451, 629, 865, 1621, 1641, 1835
RseI CAYNNNNRTG 6 cut(s) 965, 984, 1283, 1289, 1417, 1882
SaqAI TTAA 6 cut(s) 168, 993, 1205, 1257, 1388, 1587
SatI GCNGC 6 cut(s) 375, 549, 1433, 1738, 1803, 1845
Sau3AI GATC 6 cut(s) 580, 693, 874, 948, 1102, 1408
Sau96I GGNCC 2 cut(s) 264, 1649
ScaI AGTACT 1 cut(s) 1836
SchI GAGTC 3 cut(s) 106, 178, 1476
ScrFI CCNGG 4 cut(s) 435, 1563, 1625, 1746
SduI GDGCHC 3 cut(s) 923, 1569, 1792
SfaNI GCATC 5 cut(s) 325, 555, 889, 1101, 1831
Sfr274I CTCGAG 1 cut(s) 761
SfuI TTCGAA 2 cut(s) 233, 239
SinI GGWCC 2 cut(s) 264, 1649
SlaI CTCGAG 1 cut(s) 761
SmiMI CAYNNNNRTG 6 cut(s) 965, 984, 1283, 1289, 1417, 1882
SmlI CTYRAG 3 cut(s) 761, 1340, 1817
SmoI CTYRAG 3 cut(s) 761, 1340, 1817
Sse9I AATT 9 cut(s) 203, 235, 244, 647, 671, 701, 990, 1020, 1145
SsiI CCGC 3 cut(s) 902, 1432, 1618
SspMI CTAG 1 cut(s) 821
StyD4I CCNGG 4 cut(s) 433, 1561, 1623, 1744
StyI CCWWGG 2 cut(s) 402, 1032
TaaI ACNGT 7 cut(s) 384, 592, 644, 789, 885, 925, 1724
TaqI TCGA 6 cut(s) 233, 239, 477, 625, 762, 1489
TasI AATT 9 cut(s) 203, 235, 244, 647, 671, 701, 990, 1020, 1145
TatI WGTACW 2 cut(s) 628, 1834
TauI GCSGC 1 cut(s) 1435
TfiI GAWTC 2 cut(s) 208, 430
Tru1I TTAA 6 cut(s) 168, 993, 1205, 1257, 1388, 1587
Tru9I TTAA 6 cut(s) 168, 993, 1205, 1257, 1388, 1587
TscAI CASTG 5 cut(s) 264, 558, 595, 649, 1066
TseFI GTSAC 3 cut(s) 65, 756, 971
TseI GCWGC 5 cut(s) 374, 548, 1737, 1802, 1844
Tsp45I GTSAC 3 cut(s) 65, 756, 971
TspDTI ATGAA 4 cut(s) 696, 883, 1515, 1542
TspGWI ACGGA 1 cut(s) 1389
TspRI CASTG 5 cut(s) 264, 558, 595, 649, 1066
VpaK11BI GGWCC 2 cut(s) 264, 1649
XapI RAATTY 5 cut(s) 235, 647, 671, 701, 1145
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XhoI CTCGAG 1 cut(s) 761
XmnI GAANNNNTTC 3 cut(s) 725, 1218, 1239
XspI CTAG 1 cut(s) 821
ZrmI AGTACT 1 cut(s) 1836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.