Rh4AG428600

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000223
Physical Location & Seq
Forward (+)
72442062 .. 72444969
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG428600.1

Sequence Viewer

Length: 702 bp
ATGATGGAGGTTTCAGGCAAGAAAAAGATCAAGCCTGACCCTTTCACTGATATTGTGTTTTCTTGGTCCCTGGAGGACATTTTCAATGAGGATCTTTACAAAGACAAGGTGAAAAAGATTCCTGAATCATTTCAATCGGCTCAACATTACTTTCGGTCTTATATATATCCTTTACTGGAAGAAACCCGAGCAGAATTGCATTCAAATATGAAAACTCTTAATAGAGCACCGTTTGCTCAAGTAGTGGGTTTTGAAGAAGCCCAGCCATATGGAACAAAGCTATATGATGTCAAGGTTGATTACTGGCATAACAGGTTCATTGATAGTGGCAAGGAGCCATATAAAACTTTGCCCGGTGATCTTTTTGTTTTAGCTGATGCTAAACCTGAAACTGTTTCCGATTTACAAAGAGTAGGGAGGTCATGGGCTTTTGCATCGGCCACTAATTATGTCCCAGAAAGTGAGAATGAAGATGACAGTACCTCTCTTTATTTCAAAGTCATGGCATCAAAAGAGTTTGAAGTCAAAAATAGCACGACATCACTTTTTATAGTTTTCTTGGGGAGTTTAATCCGTGATGGAAGAATTTGGAAAGCGTTGCACATGTCCAGAAATCTGAATATTATCAACGAAGTTCTATGCACTGATTCTATGGTAATGAAAGTTTTGTTTTGTTTTCTTCGTGAATTTAAACCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

233

Amino Acids

27.11

Weight (kDa)

5.89

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 77 - 206 4.4e-61 Domain of unknown function (DUF6469)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 438
AcsI RAATTY 2 cut(s) 585, 686
AfaI GTAC 1 cut(s) 481
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 6 cut(s) 85, 134, 204, 254, 496, 521
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 2 cut(s) 280, 374
AluI AGCT 2 cut(s) 280, 374
Alw21I GWGCWC 1 cut(s) 229
AlwI GGATC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 1 cut(s) 438
ApoI RAATTY 2 cut(s) 585, 686
Asp700I GAANNNNTTC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 2 cut(s) 121, 368
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 229
BccI CCATC 1 cut(s) 572
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 1 cut(s) 354
Bme1390I CCNGG 2 cut(s) 71, 354
Bme18I GGWCC 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 2 cut(s) 68, 336
BmrFI CCNGG 2 cut(s) 71, 354
BmsI GCATC 3 cut(s) 367, 443, 515
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 180, 308
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 69
BseNI ACTGG 2 cut(s) 180, 308
BseYI CCCAGC 1 cut(s) 261
BshFI GGCC 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 2 cut(s) 52, 437
BsmFI GGGAC 2 cut(s) 52, 437
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 1 cut(s) 440
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 3 cut(s) 27, 91, 358
BspANI GGCC 1 cut(s) 440
BspLI GGNNCC 2 cut(s) 68, 336
BspPI GGATC 1 cut(s) 99
BsrI ACTGG 2 cut(s) 180, 308
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 3 cut(s) 27, 91, 358
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 3 cut(s) 231, 394, 479
BstAPI GCANNNNNTGC 1 cut(s) 233
BstKTI GATC 3 cut(s) 30, 94, 361
BstMBI GATC 3 cut(s) 27, 91, 358
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 69, 352
BstX2I RGATCY 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 1 cut(s) 440
BtsIMutI CAGTG 2 cut(s) 45, 642
Cfr13I GGNCC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 480
CviAII CATG 3 cut(s) 423, 502, 604
CviJI RGCY 9 cut(s) 34, 140, 260, 265, 280, 337, 374, 428, 440
CviKI_1 RGCY 9 cut(s) 34, 140, 260, 265, 280, 337, 374, 428, 440
CviQI GTAC 1 cut(s) 480
DpnI GATC 3 cut(s) 29, 93, 360
DpnII GATC 3 cut(s) 27, 91, 358
DraI TTTAAA 1 cut(s) 691
EaeI YGGCCR 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 69
FaeI CATG 3 cut(s) 426, 505, 607
FaqI GGGAC 2 cut(s) 52, 437
FatI CATG 3 cut(s) 422, 501, 603
FauNDI CATATG 1 cut(s) 268
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 440
HapII CCGG 1 cut(s) 354
Hin1II CATG 3 cut(s) 426, 505, 607
HinfI GANTC 3 cut(s) 118, 125, 647
HpaII CCGG 1 cut(s) 354
HphI GGTGA 2 cut(s) 121, 368
Hpy188I TCNGA 2 cut(s) 400, 618
Hpy188III TCNNGA 3 cut(s) 122, 609, 683
HpyCH4III ACNGT 3 cut(s) 231, 394, 479
HpyCH4V TGCA 4 cut(s) 199, 434, 601, 642
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
Hsp92II CATG 3 cut(s) 426, 505, 607
Kzo9I GATC 3 cut(s) 27, 91, 358
LmnI GCTCC 1 cut(s) 334
LweI GCATC 3 cut(s) 367, 443, 515
MalI GATC 3 cut(s) 29, 93, 360
MboI GATC 3 cut(s) 27, 91, 358
MboII GAAGA 5 cut(s) 191, 266, 482, 594, 671
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 4 cut(s) 194, 445, 585, 686
MnlI CCTC 4 cut(s) 67, 82, 411, 493
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 3 cut(s) 219, 569, 690
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 2 cut(s) 71, 354
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 1 cut(s) 354
NdeI CATATG 1 cut(s) 268
NdeII GATC 3 cut(s) 27, 91, 358
NlaIII CATG 3 cut(s) 426, 505, 607
NlaIV GGNNCC 2 cut(s) 68, 336
NspI RCATGY 1 cut(s) 607
PciI ACATGT 1 cut(s) 603
PctI GAATGC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 3 cut(s) 118, 125, 647
PscI ACATGT 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 68, 336
PspPI GGNCC 1 cut(s) 66
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 3 cut(s) 219, 569, 690
Sau3AI GATC 3 cut(s) 27, 91, 358
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 2 cut(s) 71, 354
SduI GDGCHC 1 cut(s) 229
SetI ASST 9 cut(s) 12, 111, 282, 297, 317, 376, 388, 422, 485
SfaNI GCATC 3 cut(s) 367, 443, 515
SinI GGWCC 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 4 cut(s) 194, 445, 585, 686
SspI AATATT 1 cut(s) 622
StyD4I CCNGG 2 cut(s) 69, 352
TaaI ACNGT 3 cut(s) 231, 394, 479
TaqII GACCGA 1 cut(s) 144
TasI AATT 4 cut(s) 194, 445, 585, 686
TfiI GAWTC 3 cut(s) 118, 125, 647
Tru1I TTAA 3 cut(s) 219, 569, 690
Tru9I TTAA 3 cut(s) 219, 569, 690
TscAI CASTG 2 cut(s) 52, 649
TspDTI ATGAA 4 cut(s) 224, 307, 483, 674
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 2 cut(s) 52, 649
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 2 cut(s) 585, 686
XceI RCATGY 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.