TPR and ankyrin repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UvrD-helicase | PF00580 | 217 - 306 | 3.3e-09 | UvrD/REP helicase N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 446 |
| AarI | CACCTGC | 2 cut(s) | 1255, 2438 |
| Acc36I | ACCTGC | 2 cut(s) | 1255, 2438 |
| AccB1I | GGYRCC | 1 cut(s) | 27 |
| AccI | GTMKAC | 2 cut(s) | 763, 4523 |
| AccII | CGCG | 1 cut(s) | 4627 |
| AciI | CCGC | 4 cut(s) | 2311, 3263, 4132, 4597 |
| AclWI | GGATC | 3 cut(s) | 1704, 2259, 3515 |
| AcoI | YGGCCR | 3 cut(s) | 403, 637, 1752 |
| AcuI | CTGAAG | 4 cut(s) | 117, 1875, 2835, 4497 |
| AdeI | CACNNNGTG | 1 cut(s) | 1761 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 262, 447, 2836, 3235, 3525, 4128 |
| AflII | CTTAAG | 1 cut(s) | 4124 |
| AflIII | ACRYGT | 1 cut(s) | 163 |
| AhlI | ACTAGT | 1 cut(s) | 2854 |
| AjnI | CCWGG | 8 cut(s) | 435, 920, 1964, 2835, 3631, 3742, 3846, 4342 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 264, 296, 962, 994, 2352, 2384 |
| AleI | CACNNNNGTG | 1 cut(s) | 4531 |
| Alw21I | GWGCWC | 2 cut(s) | 2231, 4430 |
| Alw26I | GTCTC | 6 cut(s) | 2093, 2588, 2686, 3094, 4446, 4558 |
| AlwI | GGATC | 3 cut(s) | 1704, 2259, 3515 |
| Ama87I | CYCGRG | 1 cut(s) | 3524 |
| AseI | ATTAAT | 1 cut(s) | 3903 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 8, 4098 |
| AspLEI | GCGC | 1 cut(s) | 4627 |
| AspS9I | GGNCC | 4 cut(s) | 492, 1357, 1800, 2529 |
| AsuC2I | CCSGG | 1 cut(s) | 611 |
| AvaI | CYCGRG | 1 cut(s) | 3524 |
| AvaII | GGWCC | 1 cut(s) | 1800 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3849, 3882 |
| BalI | TGGCCA | 2 cut(s) | 405, 1754 |
| BanI | GGYRCC | 1 cut(s) | 27 |
| BanII | GRGCYC | 3 cut(s) | 2231, 3241, 4430 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 738, 770 |
| BauI | CACGAG | 2 cut(s) | 2894, 3995 |
| BbsI | GAAGAC | 3 cut(s) | 2823, 3764, 4485 |
| Bbv12I | GWGCWC | 2 cut(s) | 2231, 4430 |
| BciT130I | CCWGG | 8 cut(s) | 437, 922, 1966, 2837, 3633, 3744, 3848, 4344 |
| BciVI | GTATCC | 2 cut(s) | 2126, 2190 |
| BclI | TGATCA | 2 cut(s) | 790, 2790 |
| BcnI | CCSGG | 1 cut(s) | 611 |
| BcoDI | GTCTC | 6 cut(s) | 2093, 2588, 2686, 3094, 4446, 4558 |
| BcuI | ACTAGT | 1 cut(s) | 2854 |
| BfaI | CTAG | 7 cut(s) | 2027, 2181, 2222, 2855, 2909, 3654, 4215 |
| BfmI | CTRYAG | 7 cut(s) | 582, 1587, 1902, 2049, 3153, 3320, 3876 |
| BfrI | CTTAAG | 1 cut(s) | 4124 |
| BfuAI | ACCTGC | 2 cut(s) | 1255, 2438 |
| BfuI | GTATCC | 2 cut(s) | 2126, 2190 |
| BglII | AGATCT | 2 cut(s) | 826, 3937 |
| BlpI | GCTNAGC | 1 cut(s) | 605 |
| BmcAI | AGTACT | 3 cut(s) | 1291, 2771, 3625 |
| Bme1390I | CCNGG | 9 cut(s) | 437, 611, 922, 1966, 2837, 3633, 3744, 3848, 4344 |
| Bme18I | GGWCC | 1 cut(s) | 1800 |
| BmeT110I | CYCGRG | 1 cut(s) | 3524 |
| BmgT120I | GGNCC | 4 cut(s) | 492, 1357, 1800, 2529 |
| BmiI | GGNNCC | 3 cut(s) | 29, 494, 941 |
| BmrFI | CCNGG | 9 cut(s) | 437, 611, 922, 1966, 2837, 3633, 3744, 3848, 4344 |
| BmrI | ACTGGG | 1 cut(s) | 1798 |
| BmuI | ACTGGG | 1 cut(s) | 1798 |
| BpiI | GAAGAC | 3 cut(s) | 2823, 3764, 4485 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2075, 2107, 3223, 3255, 3286, 3318 |
| BpmI | CTGGAG | 3 cut(s) | 1215, 3736, 4389 |
| Bpu10I | CCTNAGC | 1 cut(s) | 138 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 605 |
| BpuEI | CTTGAG | 4 cut(s) | 752, 1382, 3288, 4169 |
| BpuMI | CCSGG | 1 cut(s) | 611 |
| Bsa29I | ATCGAT | 2 cut(s) | 2139, 4413 |
| BsaI | GGTCTC | 1 cut(s) | 3094 |
| BsaJI | CCNNGG | 7 cut(s) | 921, 1714, 3312, 3590, 3922, 4103, 4287 |
| BsaWI | WCCGGW | 1 cut(s) | 1177 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1699, 1729 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 262, 447, 2836, 3235, 3525, 4128 |
| Bse1I | ACTGG | 5 cut(s) | 1793, 2293, 3642, 3719, 4325 |
| Bse3DI | GCAATG | 2 cut(s) | 76, 3519 |
| BseBI | CCWGG | 8 cut(s) | 437, 922, 1966, 2837, 3633, 3744, 3848, 4344 |
| BseCI | ATCGAT | 2 cut(s) | 2139, 4413 |
| BseDI | CCNNGG | 7 cut(s) | 921, 1714, 3312, 3590, 3922, 4103, 4287 |
| BseGI | GGATG | 9 cut(s) | 53, 1378, 2039, 2050, 2918, 3856, 3885, 4060, 4297 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 262, 447, 2836, 3235, 3525, 4128 |
| BseMI | GCAATG | 2 cut(s) | 76, 3519 |
| BseMII | CTCAG | 7 cut(s) | 521, 619, 2616, 2702, 2747, 3137, 3675 |
| BseNI | ACTGG | 5 cut(s) | 1793, 2293, 3642, 3719, 4325 |
| BseRI | GAGGAG | 6 cut(s) | 260, 1607, 1715, 2199, 2202, 4150 |
| BseYI | CCCAGC | 2 cut(s) | 205, 4072 |
| BsgI | GTGCAG | 3 cut(s) | 62, 1278, 2217 |
| Bsh1236I | CGCG | 1 cut(s) | 4627 |
| BshNI | GGYRCC | 1 cut(s) | 27 |
| BshVI | ATCGAT | 2 cut(s) | 2139, 4413 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2231, 4430 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3524 |
| BsiSI | CCGG | 2 cut(s) | 610, 1178 |
| BsiWI | CGTACG | 1 cut(s) | 1061 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 262, 447, 2836, 3235, 3525, 4128 |
| BsmAI | GTCTC | 6 cut(s) | 2093, 2588, 2686, 3094, 4446, 4558 |
| BsmI | GAATGC | 2 cut(s) | 2809, 3923 |
| Bso31I | GGTCTC | 1 cut(s) | 3094 |
| BsoBI | CYCGRG | 1 cut(s) | 3524 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2231, 3241, 4430 |
| Bsp1407I | TGTACA | 1 cut(s) | 1383 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 605 |
| Bsp19I | CCATGG | 2 cut(s) | 3590, 4103 |
| BspACI | CCGC | 4 cut(s) | 2311, 3263, 4132, 4597 |
| BspCNI | CTCAG | 7 cut(s) | 520, 618, 2617, 2701, 2748, 3136, 3676 |
| BspDI | ATCGAT | 2 cut(s) | 2139, 4413 |
| BspFNI | CGCG | 1 cut(s) | 4627 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspLI | GGNNCC | 3 cut(s) | 29, 494, 941 |
| BspMAI | CTGCAG | 2 cut(s) | 2053, 3324 |
| BspMI | ACCTGC | 2 cut(s) | 1255, 2438 |
| BspPI | GGATC | 3 cut(s) | 1704, 2259, 3515 |
| BspQI | GCTCTTC | 1 cut(s) | 4418 |
| BspT107I | GGYRCC | 1 cut(s) | 27 |
| BspTI | CTTAAG | 1 cut(s) | 4124 |
| BspTNI | GGTCTC | 1 cut(s) | 3094 |
| BsrDI | GCAATG | 2 cut(s) | 76, 3519 |
| BsrGI | TGTACA | 1 cut(s) | 1383 |
| BsrI | ACTGG | 5 cut(s) | 1793, 2293, 3642, 3719, 4325 |
| BssECI | CCNNGG | 7 cut(s) | 921, 1714, 3312, 3590, 3922, 4103, 4287 |
| BssSI | CACGAG | 2 cut(s) | 2894, 3995 |
| BssT1I | CCWWGG | 5 cut(s) | 3312, 3590, 3922, 4103, 4287 |
| Bst2BI | CACGAG | 2 cut(s) | 2894, 3995 |
| Bst2UI | CCWGG | 8 cut(s) | 437, 922, 1966, 2837, 3633, 3744, 3848, 4344 |
| Bst4CI | ACNGT | 5 cut(s) | 130, 1345, 1588, 1835, 4484 |
| Bst6I | CTCTTC | 6 cut(s) | 1851, 2176, 3029, 3287, 4418, 4624 |
| BstAFI | CTTAAG | 1 cut(s) | 4124 |
| BstAUI | TGTACA | 1 cut(s) | 1383 |
| BstDSI | CCRYGG | 3 cut(s) | 1714, 3590, 4103 |
| BstEII | GGTNACC | 1 cut(s) | 3910 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 445 |
| BstF5I | GGATG | 9 cut(s) | 53, 1378, 2039, 2050, 2918, 3856, 3885, 4060, 4297 |
| BstFNI | CGCG | 1 cut(s) | 4627 |
| BstHHI | GCGC | 1 cut(s) | 4627 |
| BstMAI | GTCTC | 6 cut(s) | 2093, 2588, 2686, 3094, 4446, 4558 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 587, 1648, 1919, 2523, 2552, 3184, 4556, 4577 |
| BstNI | CCWGG | 8 cut(s) | 437, 922, 1966, 2837, 3633, 3744, 3848, 4344 |
| BstNSI | RCATGY | 6 cut(s) | 167, 594, 1070, 1328, 2159, 2699 |
| BstPI | GGTNACC | 1 cut(s) | 3910 |
| BstSCI | CCNGG | 9 cut(s) | 435, 609, 920, 1964, 2835, 3631, 3742, 3846, 4342 |
| BstSFI | CTRYAG | 7 cut(s) | 582, 1587, 1902, 2049, 3153, 3320, 3876 |
| BstUI | CGCG | 1 cut(s) | 4627 |
| BstV2I | GAAGAC | 3 cut(s) | 2823, 3764, 4485 |
| BstX2I | RGATCY | 4 cut(s) | 826, 1709, 2264, 3937 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3077, 4447 |
| BstYI | RGATCY | 4 cut(s) | 826, 1709, 2264, 3937 |
| Bsu15I | ATCGAT | 2 cut(s) | 2139, 4413 |
| BsuI | GTATCC | 2 cut(s) | 2126, 2190 |
| BsuTUI | ATCGAT | 2 cut(s) | 2139, 4413 |
| BtgI | CCRYGG | 3 cut(s) | 1714, 3590, 4103 |
| BtgZI | GCGATG | 1 cut(s) | 399 |
| BtsCI | GGATG | 9 cut(s) | 53, 1378, 2039, 2050, 2918, 3856, 3885, 4060, 4297 |
| BtsI | GCAGTG | 1 cut(s) | 3317 |
| BtsIMutI | CAGTG | 8 cut(s) | 135, 1501, 2622, 2800, 3317, 3828, 4089, 4455 |
| BveI | ACCTGC | 2 cut(s) | 1255, 2438 |
| CciI | TCATGA | 1 cut(s) | 283 |
| CfoI | GCGC | 1 cut(s) | 4627 |
| Cfr13I | GGNCC | 4 cut(s) | 492, 1357, 1800, 2529 |
| ClaI | ATCGAT | 2 cut(s) | 2139, 4413 |
| CseI | GACGC | 1 cut(s) | 3758 |
| CsiI | ACCWGGT | 3 cut(s) | 2835, 3742, 4342 |
| DraI | TTTAAA | 3 cut(s) | 1143, 2967, 4434 |
| DraIII | CACNNNGTG | 1 cut(s) | 1761 |
| EaeI | YGGCCR | 3 cut(s) | 403, 637, 1752 |
| Eam1104I | CTCTTC | 6 cut(s) | 1851, 2176, 3029, 3287, 4418, 4624 |
| EarI | CTCTTC | 6 cut(s) | 1851, 2176, 3029, 3287, 4418, 4624 |
| EciI | GGCGGA | 1 cut(s) | 4147 |
| Ecl136II | GAGCTC | 2 cut(s) | 2229, 4428 |
| Eco130I | CCWWGG | 5 cut(s) | 3312, 3590, 3922, 4103, 4287 |
| Eco147I | AGGCCT | 2 cut(s) | 440, 3301 |
| Eco24I | GRGCYC | 3 cut(s) | 2231, 3241, 4430 |
| Eco31I | GGTCTC | 1 cut(s) | 3094 |
| Eco32I | GATATC | 4 cut(s) | 268, 2635, 2826, 4411 |
| Eco47I | GGWCC | 1 cut(s) | 1800 |
| Eco53kI | GAGCTC | 2 cut(s) | 2229, 4428 |
| Eco57I | CTGAAG | 4 cut(s) | 117, 1875, 2835, 4497 |
| Eco88I | CYCGRG | 1 cut(s) | 3524 |
| Eco91I | GGTNACC | 1 cut(s) | 3910 |
| EcoICRI | GAGCTC | 2 cut(s) | 2229, 4428 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 445 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1357 |
| EcoO65I | GGTNACC | 1 cut(s) | 3910 |
| EcoRI | GAATTC | 1 cut(s) | 2453 |
| EcoRII | CCWGG | 8 cut(s) | 435, 920, 1964, 2835, 3631, 3742, 3846, 4342 |
| EcoRV | GATATC | 4 cut(s) | 268, 2635, 2826, 4411 |
| EcoT14I | CCWWGG | 5 cut(s) | 3312, 3590, 3922, 4103, 4287 |
| EcoT22I | ATGCAT | 2 cut(s) | 391, 2475 |
| EcoT38I | GRGCYC | 3 cut(s) | 2231, 3241, 4430 |
| ErhI | CCWWGG | 5 cut(s) | 3312, 3590, 3922, 4103, 4287 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3873, 3905 |
| FauNDI | CATATG | 1 cut(s) | 861 |
| FbaI | TGATCA | 2 cut(s) | 790, 2790 |
| FblI | GTMKAC | 2 cut(s) | 763, 4523 |
| FokI | GGATG | 9 cut(s) | 60, 1385, 2046, 2057, 2925, 3863, 3872, 4067, 4304 |
| FriOI | GRGCYC | 3 cut(s) | 2231, 3241, 4430 |
| FspBI | CTAG | 7 cut(s) | 2027, 2181, 2222, 2855, 2909, 3654, 4215 |
| GlaI | GCGC | 1 cut(s) | 4626 |
| GsaI | CCCAGC | 2 cut(s) | 209, 4076 |
| GsuI | CTGGAG | 3 cut(s) | 1215, 3736, 4389 |
| HapII | CCGG | 2 cut(s) | 610, 1178 |
| HgaI | GACGC | 1 cut(s) | 3758 |
| HhaI | GCGC | 1 cut(s) | 4627 |
| Hin6I | GCGC | 1 cut(s) | 4625 |
| HinP1I | GCGC | 1 cut(s) | 4625 |
| HincII | GTYRAC | 2 cut(s) | 764, 4267 |
| HindII | GTYRAC | 2 cut(s) | 764, 4267 |
| HindIII | AAGCTT | 4 cut(s) | 693, 2385, 3176, 3560 |
| HpaII | CCGG | 2 cut(s) | 610, 1178 |
| Hpy99I | CGWCG | 1 cut(s) | 765 |
| HpyCH4III | ACNGT | 5 cut(s) | 130, 1345, 1588, 1835, 4484 |
| HpyCH4IV | ACGT | 2 cut(s) | 760, 3015 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 587, 1648, 1919, 2523, 2552, 3184, 4556, 4577 |
| HpySE526I | ACGT | 2 cut(s) | 760, 3015 |
| HspAI | GCGC | 1 cut(s) | 4625 |
| Ksp22I | TGATCA | 2 cut(s) | 790, 2790 |
| LguI | GCTCTTC | 1 cut(s) | 4418 |
| LmnI | GCTCC | 5 cut(s) | 247, 578, 1180, 3766, 4080 |
| MabI | ACCWGGT | 3 cut(s) | 2835, 3742, 4342 |
| MaeI | CTAG | 7 cut(s) | 2027, 2181, 2222, 2855, 2909, 3654, 4215 |
| MaeII | ACGT | 2 cut(s) | 760, 3015 |
| MaeIII | GTNAC | 9 cut(s) | 124, 166, 200, 359, 1549, 1778, 3331, 3910, 3926 |
| MfeI | CAATTG | 2 cut(s) | 915, 1131 |
| MflI | RGATCY | 4 cut(s) | 826, 1709, 2264, 3937 |
| MhlI | GDGCHC | 3 cut(s) | 2231, 3241, 4430 |
| MlsI | TGGCCA | 2 cut(s) | 405, 1754 |
| MluNI | TGGCCA | 2 cut(s) | 405, 1754 |
| MlyI | GAGTC | 7 cut(s) | 142, 546, 759, 847, 1042, 1457, 3572 |
| MmeI | TCCRAC | 4 cut(s) | 960, 2718, 3555, 4464 |
| Mox20I | TGGCCA | 2 cut(s) | 405, 1754 |
| Mph1103I | ATGCAT | 2 cut(s) | 391, 2475 |
| MroXI | GAANNNNTTC | 2 cut(s) | 8, 4098 |
| MscI | TGGCCA | 2 cut(s) | 405, 1754 |
| MslI | CAYNNNNRTG | 1 cut(s) | 4531 |
| Msp20I | TGGCCA | 2 cut(s) | 405, 1754 |
| MspA1I | CMGCKG | 2 cut(s) | 209, 3119 |
| MspCI | CTTAAG | 1 cut(s) | 4124 |
| MspI | CCGG | 2 cut(s) | 610, 1178 |
| MspR9I | CCNGG | 9 cut(s) | 437, 611, 922, 1966, 2837, 3633, 3744, 3848, 4344 |
| MssI | GTTTAAAC | 1 cut(s) | 2967 |
| MunI | CAATTG | 2 cut(s) | 915, 1131 |
| Mva1269I | GAATGC | 2 cut(s) | 2809, 3923 |
| MvaI | CCWGG | 8 cut(s) | 437, 922, 1966, 2837, 3633, 3744, 3848, 4344 |
| MvnI | CGCG | 1 cut(s) | 4627 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 587, 1648, 1919, 2523, 2552, 3184, 4556, 4577 |
| NciI | CCSGG | 1 cut(s) | 611 |
| NcoI | CCATGG | 2 cut(s) | 3590, 4103 |
| NdeI | CATATG | 1 cut(s) | 861 |
| NlaIV | GGNNCC | 3 cut(s) | 29, 494, 941 |
| NmeAIII | GCCGAG | 2 cut(s) | 665, 4535 |
| NmuCI | GTSAC | 2 cut(s) | 200, 1778 |
| NsiI | ATGCAT | 2 cut(s) | 391, 2475 |
| NspI | RCATGY | 6 cut(s) | 167, 594, 1070, 1328, 2159, 2699 |
| OliI | CACNNNNGTG | 1 cut(s) | 4531 |
| PaeI | GCATGC | 3 cut(s) | 1070, 1328, 2159 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PaqCI | CACCTGC | 2 cut(s) | 1255, 2438 |
| PceI | AGGCCT | 2 cut(s) | 440, 3301 |
| PciI | ACATGT | 1 cut(s) | 163 |
| PciSI | GCTCTTC | 1 cut(s) | 4418 |
| PctI | GAATGC | 2 cut(s) | 2809, 3923 |
| PdmI | GAANNNNTTC | 2 cut(s) | 8, 4098 |
| Pfl23II | CGTACG | 1 cut(s) | 1061 |
| PleI | GAGTC | 7 cut(s) | 141, 545, 759, 846, 1042, 1457, 3572 |
| PmeI | GTTTAAAC | 1 cut(s) | 2967 |
| PpsI | GAGTC | 7 cut(s) | 141, 545, 759, 846, 1042, 1457, 3572 |
| PscI | ACATGT | 1 cut(s) | 163 |
| PshBI | ATTAAT | 1 cut(s) | 3903 |
| PsiI | TTATAA | 1 cut(s) | 446 |
| Psp124BI | GAGCTC | 2 cut(s) | 2231, 4430 |
| Psp6I | CCWGG | 8 cut(s) | 435, 920, 1964, 2835, 3631, 3742, 3846, 4342 |
| PspEI | GGTNACC | 1 cut(s) | 3910 |
| PspFI | CCCAGC | 2 cut(s) | 205, 4072 |
| PspGI | CCWGG | 8 cut(s) | 435, 920, 1964, 2835, 3631, 3742, 3846, 4342 |
| PspLI | CGTACG | 1 cut(s) | 1061 |
| PspN4I | GGNNCC | 3 cut(s) | 29, 494, 941 |
| PspPI | GGNCC | 4 cut(s) | 492, 1357, 1800, 2529 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1440, 1472 |
| PstI | CTGCAG | 2 cut(s) | 2053, 3324 |
| PsuI | RGATCY | 4 cut(s) | 826, 1709, 2264, 3937 |
| PvuII | CAGCTG | 2 cut(s) | 209, 3119 |
| RseI | CAYNNNNRTG | 1 cut(s) | 4531 |
| SacI | GAGCTC | 2 cut(s) | 2231, 4430 |
| SalI | GTCGAC | 1 cut(s) | 762 |
| SapI | GCTCTTC | 1 cut(s) | 4418 |
| Sau96I | GGNCC | 4 cut(s) | 492, 1357, 1800, 2529 |
| ScaI | AGTACT | 3 cut(s) | 1291, 2771, 3625 |
| SchI | GAGTC | 7 cut(s) | 142, 546, 759, 847, 1042, 1457, 3572 |
| ScrFI | CCNGG | 9 cut(s) | 437, 611, 922, 1966, 2837, 3633, 3744, 3848, 4344 |
| SduI | GDGCHC | 3 cut(s) | 2231, 3241, 4430 |
| SexAI | ACCWGGT | 3 cut(s) | 2835, 3742, 4342 |
| SfcI | CTRYAG | 7 cut(s) | 582, 1587, 1902, 2049, 3153, 3320, 3876 |
| SinI | GGWCC | 1 cut(s) | 1800 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 4531 |
| SmlI | CTYRAG | 5 cut(s) | 767, 1361, 3303, 4124, 4184 |
| SmoI | CTYRAG | 5 cut(s) | 767, 1361, 3303, 4124, 4184 |
| SpeI | ACTAGT | 1 cut(s) | 2854 |
| SphI | GCATGC | 3 cut(s) | 1070, 1328, 2159 |
| SseBI | AGGCCT | 2 cut(s) | 440, 3301 |
| SsiI | CCGC | 4 cut(s) | 2311, 3263, 4132, 4597 |
| SspI | AATATT | 3 cut(s) | 1224, 1893, 3131 |
| SspMI | CTAG | 7 cut(s) | 2027, 2181, 2222, 2855, 2909, 3654, 4215 |
| SstI | GAGCTC | 2 cut(s) | 2231, 4430 |
| StuI | AGGCCT | 2 cut(s) | 440, 3301 |
| StyD4I | CCNGG | 9 cut(s) | 435, 609, 920, 1964, 2835, 3631, 3742, 3846, 4342 |
| StyI | CCWWGG | 5 cut(s) | 3312, 3590, 3922, 4103, 4287 |
| TaaI | ACNGT | 5 cut(s) | 130, 1345, 1588, 1835, 4484 |
| TaiI | ACGT | 2 cut(s) | 763, 3018 |
| TatI | WGTACW | 8 cut(s) | 1289, 1375, 1383, 2488, 2769, 3623, 4057, 4393 |
| TscAI | CASTG | 8 cut(s) | 135, 1501, 2629, 2800, 3324, 3835, 4096, 4462 |
| TseFI | GTSAC | 2 cut(s) | 200, 1778 |
| Tsp45I | GTSAC | 2 cut(s) | 200, 1778 |
| TspGWI | ACGGA | 2 cut(s) | 1049, 1395 |
| TspRI | CASTG | 8 cut(s) | 135, 1501, 2629, 2800, 3324, 3835, 4096, 4462 |
| Vha464I | CTTAAG | 1 cut(s) | 4124 |
| VpaK11BI | GGWCC | 1 cut(s) | 1800 |
| VspI | ATTAAT | 1 cut(s) | 3903 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 445 |
| XbaI | TCTAGA | 1 cut(s) | 2221 |
| XceI | RCATGY | 6 cut(s) | 167, 594, 1070, 1328, 2159, 2699 |
| XmiI | GTMKAC | 2 cut(s) | 763, 4523 |
| XmnI | GAANNNNTTC | 2 cut(s) | 8, 4098 |
| XspI | CTAG | 7 cut(s) | 2027, 2181, 2222, 2855, 2909, 3654, 4215 |
| ZrmI | AGTACT | 3 cut(s) | 1291, 2771, 3625 |
| Zsp2I | ATGCAT | 2 cut(s) | 391, 2475 |