Rmu_sc0008543.1_g000001

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008543.1
OG0000223
Physical Location & Seq
Forward (+)
50 .. 1880
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008543.1_g000001.1.cds

Sequence Viewer

Length: 1539 bp
atgattattcttgggtctggtaattttgatgatgatgaactatacaagaaacttatgaaaaatctgaaatgcagtccactgtggaaggtgttcattcagaatctgtgtgggagtatcatcgcaagacagaaagggtctgtacttatcaataccagtcaagaaaagaaagatgtgtctcttgtccagggccttcatcaggctttggcagaaacttattatgcaaactggagggaggttaatgattatatttcacctgatagtttcttttatcttattgaatgccttctgatgtgggtatcttgctttcaaggttttgttatcaccaccaaatcatgtttcattgaatggttgatgagtttcttttatcttattgaatgccttttgatgtgggtatcttgctttcaaggttttgttatcaccaccaaatcatgtttcattgaatggttgatgcagaaggaagataccaaactcaattccagtgtactggctgatgtgctaatatcttttgaacccatccttatgtttctaatcgatgtggttagggaggttctttctgataagaagaccatggttgaatggattcaaaggtctatctcacagtgggaggagtgtcattcgctgctgatcctgagatcggttgttatattgtgtttgctttatttgaattttggaatggggtatgatatactcctagatctactgtgtagggaagatatcactgaacaactcccaaagtatttttgcgatgccttgaggagaattatgtttatacaatgttctcttaatgaaaatgtgaatgctctcgctaaagcttttaagaagattggtaatgatttggtggttgcaagttttggggttgattgttcaaggttcttttgtccagattccatttctgtagagatgaaggccaacctatgcagtaatgagatactcagaaaattgtttcaaagaccacatattcatgttcaatattcccaaggtcaaactattatcggggaagtttgcagtcctgttccttctgcttatgattcggaggagaccaaggttattgagagtcctaggcttcttctacccaactctggtgtggtggaagatgaggtccaacacactggaaacagtaacaaaagtgaccttccaatgggttttgatgctttgtgggacaaatttaaaagttttaagttggtggagaaggatggtcagaggagtttactttcagatgcctcagcatttaagttgtttgtggggaaaattattttccttttgactgctgtctggttggcaagctttccaaatgctgttgacagagaagaacaaatagtatctcgagaagtgctgagcatgcttgatgagttgatgcaactttatgcggccttacatggcagtgaaaaggaacttgggaacaaaatgtctaccgtagcaaaactttctgcgaagttgcaagtgaggaggcaaagaatggagcctatgtttttttggccagagaaaagggaggcctatctacaagatgcggctgctactggaacacaaaccggcagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

512

Amino Acids

58.57

Weight (kDa)

5.35

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1409
AciI CCGC 2 cut(s) 1367, 1508
AclWI GGATC 1 cut(s) 619
AcoI YGGCCR 1 cut(s) 1475
AcsI RAATTY 2 cut(s) 664, 1163
AfaI GTAC 2 cut(s) 141, 483
AfiI CCNNNNNNNGG 4 cut(s) 196, 634, 1079, 1138
AjnI CCWGG 1 cut(s) 183
AjuI GAANNNNNNNTTGG 6 cut(s) 320, 352, 416, 448, 1377, 1409
AluBI AGCT 3 cut(s) 812, 1284, 1536
AluI AGCT 3 cut(s) 812, 1284, 1536
Alw26I GTCTC 2 cut(s) 180, 1031
AlwI GGATC 1 cut(s) 619
AlwNI CAGNNNCTG 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 1323
AoxI GGCC 5 cut(s) 187, 906, 1368, 1475, 1491
ApeKI GCWGC 3 cut(s) 619, 1511, 1533
ApoI RAATTY 2 cut(s) 664, 1163
Asp700I GAANNNNTTC 3 cut(s) 89, 282, 579
AspA2I CCTAGG 1 cut(s) 1058
AspS9I GGNCC 2 cut(s) 187, 1099
AsuHPI GGTGA 3 cut(s) 243, 313, 409
AvaI CYCGRG 1 cut(s) 1323
AvaII GGWCC 1 cut(s) 1099
AvrII CCTAGG 1 cut(s) 1058
BalI TGGCCA 1 cut(s) 1477
BbsI GAAGAC 1 cut(s) 569
BbvCI CCTCAGC 1 cut(s) 1222
BbvI GCAGC 2 cut(s) 606, 1498
BccI CCATC 2 cut(s) 521, 1187
BciT130I CCWGG 1 cut(s) 185
BcoDI GTCTC 2 cut(s) 180, 1031
BfaI CTAG 3 cut(s) 692, 1059, 1537
BfmI CTRYAG 1 cut(s) 894
BglII AGATCT 1 cut(s) 694
BisI GCNGC 5 cut(s) 620, 1368, 1509, 1512, 1534
BlnI CCTAGG 1 cut(s) 1058
BlpI GCTNAGC 1 cut(s) 1334
BlsI GCNGC 5 cut(s) 621, 1369, 1510, 1513, 1535
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 1099
BmeT110I CYCGRG 1 cut(s) 1323
BmgT120I GGNCC 2 cut(s) 187, 1099
BmiI GGNNCC 1 cut(s) 1461
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 6 cut(s) 438, 736, 1138, 1207, 1344, 1495
BoxI GACNNNNGTC 1 cut(s) 1268
BpiI GAAGAC 1 cut(s) 569
BpmI CTGGAG 1 cut(s) 247
Bpu10I CCTNAGC 1 cut(s) 1222
Bpu1102I GCTNAGC 1 cut(s) 1334
BpuEI CTTGAG 1 cut(s) 772
Bsa29I ATCGAT 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 1031
BsaJI CCNNGG 5 cut(s) 184, 567, 976, 1041, 1058
BsaXI ACNNNNNCTCC 2 cut(s) 1451, 1481
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 634, 1079, 1138
Bse118I RCCGGY 1 cut(s) 1529
Bse1I ACTGG 6 cut(s) 153, 230, 477, 489, 1114, 1522
BseBI CCWGG 1 cut(s) 185
BseCI ATCGAT 1 cut(s) 531
BseDI CCNNGG 5 cut(s) 184, 567, 976, 1041, 1058
BseGI GGATG 2 cut(s) 513, 1198
BseLI CCNNNNNNNGG 4 cut(s) 196, 634, 1079, 1138
BseMII CTCAG 4 cut(s) 620, 946, 1236, 1325
BseNI ACTGG 6 cut(s) 153, 230, 477, 489, 1114, 1522
BseRI GAGGAG 5 cut(s) 620, 769, 1049, 1216, 1459
BseXI GCAGC 2 cut(s) 606, 1498
BshFI GGCC 5 cut(s) 189, 908, 1370, 1477, 1493
BshVI ATCGAT 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 1323
BsiSI CCGG 1 cut(s) 1530
BslFI GGGAC 1 cut(s) 1172
BslI CCNNNNNNNGG 4 cut(s) 196, 634, 1079, 1138
BsmAI GTCTC 2 cut(s) 180, 1031
BsmFI GGGAC 1 cut(s) 1172
BsmI GAATGC 3 cut(s) 284, 380, 802
BsnI GGCC 5 cut(s) 189, 908, 1370, 1477, 1493
Bso31I GGTCTC 1 cut(s) 1031
BsoBI CYCGRG 1 cut(s) 1323
Bsp143I GATC 3 cut(s) 624, 632, 694
Bsp1720I GCTNAGC 1 cut(s) 1334
Bsp19I CCATGG 1 cut(s) 567
BspACI CCGC 2 cut(s) 1367, 1508
BspANI GGCC 5 cut(s) 189, 908, 1370, 1477, 1493
BspCNI CTCAG 4 cut(s) 621, 945, 1235, 1326
BspDI ATCGAT 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 1461
BspPI GGATC 1 cut(s) 619
BspTNI GGTCTC 1 cut(s) 1031
BsrFI RCCGGY 1 cut(s) 1529
BsrI ACTGG 6 cut(s) 153, 230, 477, 489, 1114, 1522
BssAI RCCGGY 1 cut(s) 1529
BssECI CCNNGG 5 cut(s) 184, 567, 976, 1041, 1058
BssMI GATC 3 cut(s) 624, 632, 694
BssT1I CCWWGG 4 cut(s) 567, 976, 1041, 1058
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 5 cut(s) 81, 600, 702, 1118, 1414
BstC8I GCNNGC 2 cut(s) 1282, 1340
BstDEI CTNAG 4 cut(s) 629, 932, 1222, 1334
BstDSI CCRYGG 1 cut(s) 567
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 513, 1198
BstKTI GATC 3 cut(s) 627, 635, 697
BstMAI GTCTC 2 cut(s) 180, 1031
BstMBI GATC 3 cut(s) 624, 632, 694
BstMWI GCNNNNNNNGC 1 cut(s) 1339
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 1342
BstPAI GACNNNNGTC 1 cut(s) 1268
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 894
BstV1I GCAGC 2 cut(s) 606, 1498
BstV2I GAAGAC 1 cut(s) 569
BstX2I RGATCY 1 cut(s) 694
BstXI CCANNNNNNTGG 2 cut(s) 484, 1109
BstYI RGATCY 1 cut(s) 694
Bsu15I ATCGAT 1 cut(s) 531
BsuRI GGCC 5 cut(s) 189, 908, 1370, 1477, 1493
BsuTUI ATCGAT 1 cut(s) 531
BtgI CCRYGG 1 cut(s) 567
BtgZI GCGATG 2 cut(s) 103, 759
BtsCI GGATG 2 cut(s) 513, 1198
BtsI GCAGTG 1 cut(s) 1387
BtsIMutI CAGTG 6 cut(s) 77, 484, 605, 717, 1107, 1387
Cac8I GCNNGC 2 cut(s) 1282, 1340
CaiI CAGNNNCTG 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 1529
Cfr13I GGNCC 2 cut(s) 187, 1099
ClaI ATCGAT 1 cut(s) 531
Csp6I GTAC 2 cut(s) 140, 482
CviAII CATG 6 cut(s) 333, 429, 568, 962, 1339, 1376
CviQI GTAC 2 cut(s) 140, 482
DdeI CTNAG 4 cut(s) 629, 932, 1222, 1334
DpnI GATC 3 cut(s) 626, 634, 696
DpnII GATC 3 cut(s) 624, 632, 694
DraI TTTAAA 1 cut(s) 1168
EaeI YGGCCR 1 cut(s) 1475
Eco130I CCWWGG 4 cut(s) 567, 976, 1041, 1058
Eco147I AGGCCT 1 cut(s) 1493
Eco31I GGTCTC 1 cut(s) 1031
Eco32I GATATC 1 cut(s) 715
Eco47I GGWCC 1 cut(s) 1099
Eco88I CYCGRG 1 cut(s) 1323
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 183
EcoRV GATATC 1 cut(s) 715
EcoT14I CCWWGG 4 cut(s) 567, 976, 1041, 1058
ErhI CCWWGG 4 cut(s) 567, 976, 1041, 1058
FaeI CATG 6 cut(s) 336, 432, 571, 965, 1342, 1379
FaqI GGGAC 1 cut(s) 1172
FatI CATG 6 cut(s) 332, 428, 567, 961, 1338, 1375
FblI GTMKAC 1 cut(s) 1409
Fnu4HI GCNGC 5 cut(s) 620, 1368, 1509, 1512, 1534
FokI GGATG 2 cut(s) 500, 1205
Fsp4HI GCNGC 5 cut(s) 620, 1368, 1509, 1512, 1534
FspBI CTAG 3 cut(s) 692, 1059, 1537
GluI GCNGC 5 cut(s) 620, 1368, 1509, 1512, 1534
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 5 cut(s) 189, 908, 1370, 1477, 1493
HapII CCGG 1 cut(s) 1530
Hin1II CATG 6 cut(s) 336, 432, 571, 965, 1342, 1379
HincII GTYRAC 1 cut(s) 1300
HindII GTYRAC 1 cut(s) 1300
HindIII AAGCTT 2 cut(s) 810, 1282
HinfI GANTC 5 cut(s) 100, 580, 884, 1028, 1054
HpaII CCGG 1 cut(s) 1530
HphI GGTGA 3 cut(s) 243, 313, 409
Hpy166II GTNNAC 5 cut(s) 77, 482, 1208, 1300, 1410
Hpy188I TCNGA 8 cut(s) 66, 99, 288, 556, 935, 1033, 1200, 1216
Hpy188III TCNNGA 5 cut(s) 158, 628, 881, 1323, 1325
Hpy8I GTNNAC 5 cut(s) 77, 482, 1208, 1300, 1410
HpyAV CCTTC 8 cut(s) 79, 200, 293, 448, 898, 1026, 1142, 1183
HpyCH4III ACNGT 5 cut(s) 81, 600, 702, 1118, 1414
HpyCH4V TGCA 8 cut(s) 72, 221, 451, 845, 918, 1005, 1357, 1438
HpyF10VI GCNNNNNNNGC 1 cut(s) 1339
HpyF3I CTNAG 4 cut(s) 629, 932, 1222, 1334
Hsp92II CATG 6 cut(s) 336, 432, 571, 965, 1342, 1379
Kzo9I GATC 3 cut(s) 624, 632, 694
LmnI GCTCC 1 cut(s) 1459
Lsp1109I GCAGC 2 cut(s) 606, 1498
LweI GCATC 6 cut(s) 438, 736, 1138, 1207, 1344, 1495
MaeI CTAG 3 cut(s) 692, 1059, 1537
MaeIII GTNAC 2 cut(s) 1118, 1127
MalI GATC 3 cut(s) 626, 634, 696
MboI GATC 3 cut(s) 624, 632, 694
MboII GAAGA 7 cut(s) 470, 574, 722, 832, 1058, 1103, 1319
MflI RGATCY 1 cut(s) 694
MlsI TGGCCA 1 cut(s) 1477
MluCI AATT 7 cut(s) 22, 472, 664, 759, 938, 1163, 1248
MluNI TGGCCA 1 cut(s) 1477
MlyI GAGTC 1 cut(s) 1063
MmeI TCCRAC 1 cut(s) 1126
Mox20I TGGCCA 1 cut(s) 1477
MroXI GAANNNNTTC 3 cut(s) 89, 282, 579
MscI TGGCCA 1 cut(s) 1477
MseI TTAA 6 cut(s) 237, 783, 816, 1167, 1176, 1230
MslI CAYNNNNRTG 3 cut(s) 518, 960, 1380
Msp20I TGGCCA 1 cut(s) 1477
MspI CCGG 1 cut(s) 1530
MspR9I CCNGG 1 cut(s) 185
Mva1269I GAATGC 3 cut(s) 284, 380, 802
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 1339
NcoI CCATGG 1 cut(s) 567
NdeII GATC 3 cut(s) 624, 632, 694
NlaIII CATG 6 cut(s) 336, 432, 571, 965, 1342, 1379
NlaIV GGNNCC 1 cut(s) 1461
NmuCI GTSAC 1 cut(s) 1127
NspI RCATGY 1 cut(s) 1342
PaeI GCATGC 1 cut(s) 1342
PaeR7I CTCGAG 1 cut(s) 1323
PceI AGGCCT 1 cut(s) 1493
PctI GAATGC 3 cut(s) 284, 380, 802
PdmI GAANNNNTTC 3 cut(s) 89, 282, 579
PfeI GAWTC 4 cut(s) 100, 580, 884, 1028
PkrI GCNGC 5 cut(s) 621, 1369, 1510, 1513, 1535
PleI GAGTC 1 cut(s) 1062
PpsI GAGTC 1 cut(s) 1062
PshAI GACNNNNGTC 1 cut(s) 1268
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 1461
PspPI GGNCC 2 cut(s) 187, 1099
PstNI CAGNNNCTG 1 cut(s) 103
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 2 cut(s) 141, 483
RsaNI GTAC 2 cut(s) 140, 482
RseI CAYNNNNRTG 3 cut(s) 518, 960, 1380
SaqAI TTAA 6 cut(s) 237, 783, 816, 1167, 1176, 1230
SatI GCNGC 5 cut(s) 620, 1368, 1509, 1512, 1534
Sau3AI GATC 3 cut(s) 624, 632, 694
Sau96I GGNCC 2 cut(s) 187, 1099
SchI GAGTC 1 cut(s) 1063
ScrFI CCNGG 1 cut(s) 185
SfaNI GCATC 6 cut(s) 438, 736, 1138, 1207, 1344, 1495
SfcI CTRYAG 1 cut(s) 894
Sfr274I CTCGAG 1 cut(s) 1323
SinI GGWCC 1 cut(s) 1099
SlaI CTCGAG 1 cut(s) 1323
SmiMI CAYNNNNRTG 3 cut(s) 518, 960, 1380
SmlI CTYRAG 2 cut(s) 751, 1323
SmoI CTYRAG 2 cut(s) 751, 1323
SphI GCATGC 1 cut(s) 1342
Sse9I AATT 7 cut(s) 22, 472, 664, 759, 938, 1163, 1248
SseBI AGGCCT 1 cut(s) 1493
SsiI CCGC 2 cut(s) 1367, 1508
SspI AATATT 1 cut(s) 971
SspMI CTAG 3 cut(s) 692, 1059, 1537
StuI AGGCCT 1 cut(s) 1493
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 4 cut(s) 567, 976, 1041, 1058
TaaI ACNGT 5 cut(s) 81, 600, 702, 1118, 1414
TaqI TCGA 2 cut(s) 531, 1324
TasI AATT 7 cut(s) 22, 472, 664, 759, 938, 1163, 1248
TatI WGTACW 2 cut(s) 139, 481
TauI GCSGC 2 cut(s) 1370, 1511
TfiI GAWTC 4 cut(s) 100, 580, 884, 1028
Tru1I TTAA 6 cut(s) 237, 783, 816, 1167, 1176, 1230
Tru9I TTAA 6 cut(s) 237, 783, 816, 1167, 1176, 1230
TscAI CASTG 6 cut(s) 84, 484, 605, 724, 1114, 1387
TseFI GTSAC 1 cut(s) 1127
TseI GCWGC 3 cut(s) 619, 1511, 1533
Tsp45I GTSAC 1 cut(s) 1127
TspDTI ATGAA 9 cut(s) 51, 71, 82, 182, 328, 424, 801, 917, 950
TspRI CASTG 6 cut(s) 84, 484, 605, 724, 1114, 1387
VpaK11BI GGWCC 1 cut(s) 1099
XagI CCTNNNNNAGG 1 cut(s) 194
XapI RAATTY 2 cut(s) 664, 1163
XceI RCATGY 1 cut(s) 1342
XcmI CCANNNNNNNNNTGG 1 cut(s) 1081
XhoI CTCGAG 1 cut(s) 1323
XmaJI CCTAGG 1 cut(s) 1058
XmiI GTMKAC 1 cut(s) 1409
XmnI GAANNNNTTC 3 cut(s) 89, 282, 579
XspI CTAG 3 cut(s) 692, 1059, 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.