MD13G1010700.v1.1

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000223
Physical Location & Seq
Reverse (-)
643662 .. 654723
11062 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1010700.v1.1.491

Sequence Viewer

Length: 8121 bp
ATGCTGTGGAGTGAGACTGTGAGAGTGAGTGAGATGATGGAGGCTTCAGGCAAGAAGAAGACTGAAACGGACCGTTTCACTGATACCGTGTTTTCTTGGTCACTTGAAGACATTCTCGATGAGAATCTGTACAAGAACCAGGTGGAAGAGATTCCGAAATCATTTCAATCGGTTCAGCATTATTTTGGGTCTTATTTATTCCCCTTGTTGGAGGAAACTAGAGCTCAAGTGCATTCTAGTATGGAAACTATTTACAGAGCACCATTTGCTGAAGTAGTTGCTTTTGAAGAAGCAAAACCGCATGGGAAAAATCTATATGATGTCAAGGTTGATTACTGGAGAAACAGGTTCAGTGATCGCGGAAAGGAGCCATACAAAACATTGCCCGGGGACCTTTTTATCTTAGCGGATGCTAAACCTGAAACTGTTTCTGATTTACAAAGGGTTGGGAGATCATGGGCTTTTGTATCAGTCACTAGAGTCTCAGAAAACGATAACGAGGATGATAGTACTTCACTTTCTTTTAAAGTCAAGGCATCAAAGGAGTTTGAAGACGAAAGTAGCGCTTGGAAATCATTGGTTTTGGTATTCCTTGTGAATTTAATCCCTAATGGCAGAATATGGAAATCATTGAACATGTTCGGAAATCTGAAGATTATCAGGGAAGTTCTGCGCACCGATTTTGTGGCTCAGGAAAACTATCACCTTCGTTCTGAAACGAATGATGACATCCGGGATAAGTGGTTAGCTGAGAGTTTATCTGCTGGATTGAACGAGTCACAAACAGGGGCAGTTGTGGCCTGTCTTGAAATGCTGCAAAGTGATTCCAAGTCTGGTGTGCAACTTATATGGGGTCCTCCTGGGACAGGAAAAACTAGAGCCACCGCTACTCTGCTTTTTACTCTGTTACGGATGAACTGTAGGACGCTCATTTGTGCCCCAACAAATGTCGCAATAACTGAAGTGGCTTCTCGTGTTGTAAAGATGGTGACTCAAGCAGAGTCTAATGCCATGTTTTGTCCTCTGGGACAAATTCTTCTGTTTGGGAATAAGGAGCGACTCAAAGTTGGTTCAGACATTGAAGATATATATATGGATAACCGTGTCAAAAGGCTTGGCGAGTGCTTGGGGCCGCTGACTGGTTGGAGTAGTTGCTTTGCTTCCATGATCGGTTTTCTTGAAGATTGCGTTTCTCATTACCATATTTTCCTGGAAAATGAGTGGGCCAAAGAGAAAGGACAAACTAGTGGCAGTGAACCGACTGAGAAAGAATACAGAAGTGATAGTGAAGTTAGCAAGGGGATGTGCAAATCGTTTCTTGAATTTTTCAGAGAGAGATTTGTCTCTACTGCATCACCCCTAATATATTGCATTTCTACCTTCTGTACTCATATAGGCAAAAATTACATATTGGAACGTAATTTCCAAAATATGACTTCACTCGTGGGCCTGCTTGATTCCTTTAAATCATTATTGTTTCAAGGGAATGTTGTTTCTCAGAGACTGGAAGAGATTTTCTCTCGTTCAGAAGTTGAAGATGTGCCTGAGCCATTTATGGATGACTCGTTTCTTTTGTACACGAAGAGAAGGGAATGCCTTTCAGTATTACATGTTCTACAGGATTCTCTTAGAGGGCTTAGTCTTCCAAATTTTCAGAACCAAGAATCTCTGATGGAGTTCTGTTTTCAAAGAGCTTCCTTAATATTTTGCACTGCATCCAGTTCATATAAGCTGCATAGAGTGGCAATGGATCCACTGACCCTTGTTGTTATTGATGAAGCTGCACAATTGAAAGAGTGCGAATCAACTATACCGCTGCAACTTCGAGGTGTGAAGCACGCTGTTCTTGTTGGTGATGAATGTCAGTTACCAGCTACGGTGCAAAGCAATGTGTCTGATGAAGCTGGGTTTGCAAGAAGCTTGTTTGAGAGGTTGAGCTTAATGGGTCACTCCAAACACCTTCTAAATATGCAATACAGAATGCATCCATCAATAAGTTTCTTCCCAAATTCTAATTTCTATTATAAGCTGCTCTGGGACGCTCCAAATGTTCAAAGTAGAAGCTATGAGAAACACTATCTTCCTGGATCAATGTTCGGTCCATATTCCTTTATTAATGTTATTGGTGGAAGAGAGGAGAAAGATGAGGATGGACGTAGTCGGAAGAATATGGTTGAGGTTGCCATTGTATTGAAAATACTACGGAATCTGTACAAAAAATGGGTTGGCTCAAAAGAGAAGCTCAGTATTGGTGTGGTATCTCCTTATGCTGCACAGGTAGTTGAAGTTCAGGAAAAACTTGGAAAGAAGTATGATAAGCTTGATGGCTTTACAGTGAAGGTGAAGACAGTTGATGGGTTTCAGGGCGGGGAAGAAGACATAATTATTATGTCCACTGTACGATCCAGTAAAGACCAATCTCTCGAATTCATATCGAAACCTCAAAGAATTAATGTCTCTCTTACAAGAGCTAGGCACTGTCTCTGGATTTTGGGGAATGAAAGAACGCTATCTAATAGTGAATCTGTTTGGGAGGCCTTGGTCTTTGATGCCAAAATTCGTCAATGCTTTTTTAATGCTGATGAAGACAAGGATTTGGCAAAATCCATATTAGAGGTGAAGAAAGAGTTTGAGCAATTTGATGATTTGCTTAATCCTGACAGCTTACTTTTCAGCAATAAAATATGGAAGGTACTTTTCAGTGATATTTTCCTGAAGTCGTTCAAAAAACTGAAGTCGATCCGTTTGAAGAAGTCAGTGCTTAATCTTCTACTTAAGCTTTCTGGTGGCTGGAGACCAAGAAAGCGAAATGTTAATGTACAGACTATCAGTGGAAACTCGTCAGCAATGTTGAGGCAGTATAAAGTTGAAGGTCTATATGTTGTCTGCTCAATTGACATTGTGAAGGAGAAGAAATACATTCAAGTATTAAAGATTTGGGACATATTGCCTCTAGAGGATATCCCCAAATTGAAAAATCGCTTGGAGAGTATTTTCCATAGATATACAGATGATTTCATCAATCGTTGCAATGAGACGTGTCTTGACGGTAATTTAGAAGTTCCGAATAGCTGGCCACCCACTTTGGATATTCCCCGGTTTAAGGACCTGAGCAACAATGAGGCTGAGAGTGACTTAGTTGGTGACACTGCTGATGGTAGAAGTTATGTTGAGAATTCACAGGTCAACGAGAGTTTATTGCTCATGAAATTTTACTCATTGTCATCTGGTGTTGTGAATCACTTGCTGTCTGACCGCGAGGGTAGAGAGTTAGATCTTCCATTTGAAGTTACTGACCAGGAAATGGAGATTATCCTTTATCAGAGAAGTACCTTTATACTTGGAAGGTCGGGAACAGGGAAAACCACTGTTTTAACCATGAAATTATTTCAAAAAGAACAATGTTTTCGGTTGGCAGAGCAAGGATGCCTTAGTAGTCAAAATAGCAGTGTTGGGCAGAGTTCTTCAGCTACACAGGAAAGAACTCTACACCAGCTTTTTGTGACCGTGAGTCCTAAGCTATGTTTTGCCATCAAGCAACATGTTCTGCACTTGAAAAGTTTTGCATGTGGTGGAAGTGATTCGGCTGAGAAAAGTTCGATTGATATGGCTGATTTTGATGAAGAGGAGTCTCAATTCAAGGATATCAAGGATTCATTTCAGGATATTTCTCCCAAATCTTACCCTCTTGTTATAACATTTCATAAGTTCTTGATGATGCTTGATGGAACGCTGAGTAATTCATACTTTGATAGATTCCTCGAGGCTCGGACACTTACTCACGGTCAATTGAGAAGCTCAAGATCCGTTGCATTGCAGACGTTTATAAGGACAAAGGAGGTTAATTATGATAGATTCAGTTTGTCTTACTGGCCCCATTTCAATATGCAGTTAACGAAGAAGCTTGATGCTTCCAGAGTCTTCACAGAGATAATATCTCATATTAAAGGTGGTATTGGAGCCATAGAAGCAGGTGATGGTAAACTCAGCCGGGAGGATTATGTTCACCTGTCAGAGGGCCGGGGTTCCATTTTAAGCAAGAAAAAGAGAGGAGAAATATACGATATTTTTCAAGCTTACGAAAAAATGAAGATGGAAAATGGTGAATTTGATCTGGCTGATTTTGTAATTGATCTTCACCATCGTCTCAGGCATGGAAAATTTGTGGGTGACCAAATGGATTTTGTTTATATTGATGAGGTTCAGGATCTGACAATGAGTCAAATTGCTCTGTTTAAGCATGTGAGCAACAATGTTGAAGAAGGCTTTGTCTTTTCTGGTGATACAGCACAAACAATTGCCAGGGGTATTGATTTCCGGTTCCAAGATATACGGCATATCTTTTACAAGAAGTTTGTGTTGGAATCTAGAGGGAATGAGCCTCACGAAAGAAAAGAAAAGGGACAAATATCAGAAGTTAAACAATTGACTCAAAACTTCCGTACCCATGCTGGTGTATTGAAGTTATCACAGAGCATTGTTGAACTACTTTATCGTTTTTTCCCCCAATCTATTGATATTTTGGTACCTGAAACCAGTCTGATATATGGGGAAGCTCCGGTAGTGCTTGAATCCGGAGAAGATGAAAATGCAATCATAAAAATTTTTGGGAATAGTGGAAATGATAGTGCAAATATAGTTGGCTTCGGCGCAGAGCAAGTTATTTTGGTCCGTGATGATGATGCTAGGAAAGAAGTTTCCAAATTTGTTGGGAAGCATGCTCTTGTTCTGACCATAGTGGAATGCAAGGGGCTTGAATTCCAGGATGTACTCTTATACAACTTTTTTGGCTCATCACCAATGAAAAGGAAATGGAGCGTGATATATGATTATATGAAGGACCAAGATTTACTTGATTCCACATTGCCCCAACGCTTTCAACCGTTCAGTGAAGCCAAACACAACATCTTATGCTCTGAACTCAAACAATTATATGTTGCCGTTACTCGGACAAGACAGAGGTTGTGGGTTTGCGAGAATGCAGAAGAGATTTCCAAACCAATGTTTGACTATTGGAAGAAGAAATGTCTTGTACAAGTTAGGCAACTGGATGATTCCCTTGCACAAGCAATGCAAGTTGCAAGCAGCCCCGAGGAGTGGAAATCACGAGGCATTAAGCTATACCAGGAACATAACTATGAAATGGCCACAATGTGCTTTGAAAGAGCTGGTGATGCTTATTGGGAAAGAAGGTCCAAAGCTGCTGGCCTTAAAGCTATCGCTGATCGTATGCGGACTTCAAATCCTGAAGAGGCCAATACCATTCTTAAAGAAGCTGCTGAGATATTTGATGCTATAGGCAAGGCAGATTCCGCAGCTAGATGTTTTTCTGATTTGGGAGAGTATGAAAGAGCAGCTAGGATTTATTTGGGTAAATGTGGTGACTTGGAAAGAGCTGGAGAATGTTTTTCTCTGGCAGGATGCTATCAAGATGCTGCGGATGTGTACGCTAAAGGCAATTTTTTCTCCGAGTGTCTCACTGTTTGTGCCAAAGGAAAGCTATTTGAAATGGGTTTGAAATACATCGAATATTGGAAGGAGCATCCAGTAGAGGACACTGCTGTGGCCACAAGAAGAGAAGGAATAGATAAAATTGAGCAGGAATTTCTGGAGAGCTGCGCACTTCACTATTGCGAGTTGAAAGATAACAGATCCATGATGAAGTTTGTTAGAGCTTTTCATTCTATAATTTCAATGCGAAACTTTTTGAAGAAGTACGCTAGTCTTGATGAGCTGCTTCTGTTGGAAGAAGGATTTGGAAACTATCTTGAGGCCGTAGAAGTAGCAAAACTGAAAGGCGATATTCTACTCGAAGCTGATTTCCTTGAAAAGGCTGGCAAGTTCAGAGAGGCATCGTTGCGTATTCTATTCTATGTGCTTGCCAACTCTCTTTGGTCATATGGCAGCAAGGGGTGGCCTATTAAGCAGTTTTCACAGAAGAAGGAGCTTTTATCAAAAGCCAAGTCGTGTGCTAACAATGAGTCTGAAAGCTTTTATGAGTTTGTTTGCACTGAGGTAGACATTTTATTAAATGAGCAGAGTAGCTTGGCTCTGATGAAAAACCAAATGAATGCCTGCGAGAGACATAGGAGTATTGGAGGTGAAATTTTGTCGGCTCGAAAAATACTGGATGCTCATCTTTCTTCAAGTGCCAATAAGTACTTGTGGGAAAAAGAATTGGTTGATGATCCAGTAAAGCGTTCAGAAGACAGGATATCTGAGAACCAGGTTTCTATACATTCGTTGATGTACATCTGGAACTTTTGGAAGGATAAAATTGCTTACATGATTGAATGTCTTGGATGCCTTGATACCCAAGATTTTAATGAATCCCAAAAGAATGGAGAATTTTGTTTTAATTACTTTGGAGTATGGGGGTTGTATCAGAATTTTAATCCAGTCTATGTGCTACTGATTTCTGATGCTGATTGGGCTCGAGGCCTGGACAAAAGACATCATGGGAAGTTGGTCTCCATTGATGCTCGCCAGCTTGCTTCAGCCGCTAGGAAGTATTGGAGTTCAGAATTGCTCTCAGTTGGCATGAAGGTTCTGGACAAACTTGAAGTGCTTTACAAGTTTCCAATGAAGAATCATGATCCATCGTTCTCCCAAAGCTGGTGTCTTATCCATATCCGTGAGGTCGCAGTATGTCTTTTGCAATCAAAATATTTGAAGCTAAGGGATCAAGATACTAAGACGCTGCGGAGGTTTGTTACTTCTTCGACTGAGAGTGTTGTTGCTCGAATATTTCCCTTGGATTCAAGGAATTCCGTGACAGAGAATATGATTTCCTTTAGAAGAAATGATGCTTCAAAGAATGTCCTGAAACAAGTAATAGTTGAGTATACCAGCCCGAAGAACACGCTGTCTCTTGGGAAAATTGGAAGGCTTCTAATGGTCATTCTGGGGTCTGGTAAGCTGAATAGTGAACTGTATGAGCTTGTGAAAGATCTGGAGGGCAACTCACCATGGATGGCGTTTATCAGGATTCTCTGTAGGGATATTAAACCGGGAAATGCCAGTCAAGTACCGAGAGAGGTGTCAGTTATATGGAGGTTACATGAAGCTTTAGTTGAAACTTATAGGTCAAACTGGAGGGTTAATGATTACATATCGCCTGGTTGCTTTATGTACCTTGTAGAGCGCCTTGTGACTTTGGCAACTTGCTTTCAAGGTTTTGTTATCACTACACGCTCCTGTTTTGTGGAATGGCTTCTATACCAAGATGAAGACACCAACTTGAGTCTCATGACGGCCGATGTGCGACCATCTTTGAATGAGATTGTTGGTTTTGTGATTGATGTGGTTTGTGGCTGCATTTTCAATAAGGAAGATATGATTGAATGGATCAAAAAGTCCAGCACAAATTGGAAGAACGATTATTCACCACTCTTGCTGAGATTGGTTGTGCTGCTTTGCATGGTTTGTGTGAACTTTGGGAAGGGTCTACATATACTGGATGATTTGCTGGGGAGGAACGATATCAATCAACTGCTTCCGTGGGAGTTTTATGCTGTCCTTAAAAGCAGGAGGAGCCGCAAATCCCCAATCATAAATGTGCATGTGCTAGTAGCTGCTGCTCTTCAGAAGATCGGAAATACTATGGTAATTGCAAGTTTTGGGGTCAATTGTTCAAGGTTCTTATGTTCAGATGCCATCTTTGTGGACATGAAGGCCAGCCAGTCCCAGTCCAGGGATGACATCTATAGAAAATTGTTTCCTAAGCTTCCCGTCCTGCAAGCTTCACACGCTAAATCTGTTGAAGCAGCAGCTACTCAATCTAGCAGTCGTGCCATTTCTGAGGAGGGGAAGAATTGTAAGATTTTGCCTTCAAACTCTGGTGTGGTGGAACCATTAGAGACTAGTGTTGGGGACAGTCAAAATGCAGGTGAGGAACATTCTGTATCGAACGAGTCAAATCCAAAGTCTTCGCCCGCGGACGCTGCTTCTGGATCCCAGCATGGCAGCAGTAAGGAAACTGGAAACCAGGGGAAGAACAATGGCCAGAACAAGGAAGTCGGTGCCGCGTCTGGATCCCAACGTGGCAGCAATGAAACTGGAAACCAGGGGAAGAAAAAGGGCAAGAACAAGAGACCCAAGAAGAAAGGAGGCAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

2707

Amino Acids

307.93

Weight (kDa)

6.56

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 88 - 217 7e-64 Domain of unknown function (DUF6469)
AAA_11 PF13086 257 - 629 4.8e-34 AAA domain
AAA_19 PF13245 272 - 625 3.7e-07 AAA domain
AAA_12 PF13087 638 - 834 1e-54 AAA domain
UvrD-helicase PF00580 1346 - 1433 6.6e-07 UvrD/REP helicase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 2025, 3695, 3827
AarI CACCTGC 2 cut(s) 3962, 7877
AbsI CCTCGAGG 1 cut(s) 3761
Acc16I TGCGCA 2 cut(s) 674, 5620
Acc36I ACCTGC 2 cut(s) 3962, 7877
Acc65I GGTACC 1 cut(s) 4525
AccB1I GGYRCC 2 cut(s) 4525, 8021
AccB7I CCANNNNNTGG 1 cut(s) 3304
AccI GTMKAC 3 cut(s) 6018, 6845, 7447
AccII CGCG 4 cut(s) 360, 3258, 7937, 8027
AccIII TCCGGA 1 cut(s) 4574
AcoI YGGCCR 5 cut(s) 3074, 5145, 5565, 7254, 8002
AdeI CACNNNGTG 1 cut(s) 5154
AfeI AGCGCT 1 cut(s) 565
AflII CTTAAG 1 cut(s) 2774
AflIII ACRYGT 4 cut(s) 636, 1609, 3038, 3541
AhdI GACNNNNNGTC 2 cut(s) 3510, 4218
AhlI ACTAGT 2 cut(s) 1244, 7862
AjiI CACGTC 1 cut(s) 3039
AjuI GAANNNNNNNTTGG 6 cut(s) 2966, 2998, 4343, 4375, 5739, 5771
AleI CACNNNNGTG 1 cut(s) 5561
AloI GAACNNNNNNTCC 2 cut(s) 1407, 1439
Alw21I GWGCWC 2 cut(s) 226, 262
AlwNI CAGNNNCTG 2 cut(s) 1504, 4210
Ama87I CYCGRG 4 cut(s) 386, 3761, 5090, 6435
Aor13HI TCCGGA 1 cut(s) 4574
Aor51HI AGCGCT 1 cut(s) 565
ArsI GACNNNNNNTTYG 6 cut(s) 5948, 5980, 6604, 6636, 7910, 7942
AseI ATTAAT 2 cut(s) 2115, 2451
Asp700I GAANNNNTTC 6 cut(s) 111, 150, 638, 2720, 3580, 7212
Asp718I GGTACC 1 cut(s) 4525
AspLEI GCGC 5 cut(s) 566, 675, 4652, 5621, 7146
AsuC2I CCSGG 7 cut(s) 387, 388, 734, 3097, 3992, 4022, 7011
AvaI CYCGRG 4 cut(s) 386, 3761, 5090, 6435
AvaII GGWCC 8 cut(s) 70, 391, 854, 2099, 3106, 4669, 4840, 5193
BaeGI GKGCMC 1 cut(s) 940
BaeI ACNNNNGTAYC 2 cut(s) 4426, 4459
BalI TGGCCA 4 cut(s) 3076, 5147, 5567, 8004
BamHI GGATCC 3 cut(s) 1750, 7952, 8033
BanI GGYRCC 2 cut(s) 4525, 8021
BanII GRGCYC 2 cut(s) 226, 6436
BarI GAAGNNNNNNTAC 4 cut(s) 4119, 4151, 5221, 5253
BauI CACGAG 3 cut(s) 972, 1442, 5106
Bbv12I GWGCWC 2 cut(s) 226, 262
BceAI ACGGC 4 cut(s) 4349, 4925, 5759, 7269
BcnI CCSGG 7 cut(s) 387, 388, 734, 3097, 3992, 4022, 7011
BcuI ACTAGT 2 cut(s) 1244, 7862
BfmI CTRYAG 5 cut(s) 919, 1616, 5295, 6994, 7705
BfoI RGCGCY 2 cut(s) 567, 7147
BfrI CTTAAG 1 cut(s) 2774
BfuAI ACCTGC 2 cut(s) 3962, 7877
BglII AGATCT 2 cut(s) 3274, 6949
BmcAI AGTACT 2 cut(s) 511, 6161
Bme18I GGWCC 8 cut(s) 70, 391, 854, 2099, 3106, 4669, 4840, 5193
BmeRI GACNNNNNGTC 2 cut(s) 3510, 4218
BmeT110I CYCGRG 4 cut(s) 386, 3761, 5090, 6435
BmgBI CACGTC 1 cut(s) 3039
BmrI ACTGGG 1 cut(s) 7681
BmuI ACTGGG 1 cut(s) 7681
BplI GAGNNNNNCTC 4 cut(s) 1502, 1534, 6947, 6979
BpmI CTGGAG 6 cut(s) 358, 2812, 5418, 5630, 6974, 7114
Bpu10I CCTNAGC 6 cut(s) 690, 1545, 3110, 3516, 6677, 7722
BpuEI CTTGAG 5 cut(s) 210, 978, 3784, 5789, 7261
BpuMI CCSGG 7 cut(s) 387, 388, 734, 3097, 3992, 4022, 7011
BsaBI GATNNNNATC 4 cut(s) 123, 6135, 6251, 7485
BsaI GGTCTC 3 cut(s) 2788, 6475, 8086
BsaWI WCCGGW 3 cut(s) 4317, 4558, 4574
Bse3DI GCAATG 9 cut(s) 380, 1752, 1894, 2853, 3037, 3812, 4862, 5076, 8056
Bse8I GATNNNNATC 4 cut(s) 123, 6135, 6251, 7485
BseAI TCCGGA 1 cut(s) 4574
BseJI GATNNNNATC 4 cut(s) 123, 6135, 6251, 7485
BseMI GCAATG 9 cut(s) 380, 1752, 1894, 2853, 3037, 3812, 4862, 5076, 8056
BseRI GAGGAG 6 cut(s) 2150, 3641, 4065, 5108, 7546, 7817
BseSI GKGCMC 1 cut(s) 940
BseX3I CGGCCG 1 cut(s) 7254
BseYI CCCAGC 3 cut(s) 1904, 7468, 7956
BsgI GTGCAG 3 cut(s) 1767, 2256, 3533
Bsh1236I CGCG 4 cut(s) 360, 3258, 7937, 8027
Bsh1285I CGRYCG 1 cut(s) 7257
BshNI GGYRCC 2 cut(s) 4525, 8021
BsiEI CGRYCG 1 cut(s) 7257
BsiHKAI GWGCWC 2 cut(s) 226, 262
BsiHKCI CYCGRG 4 cut(s) 386, 3761, 5090, 6435
BsiSI CCGG 9 cut(s) 387, 733, 3097, 3991, 4021, 4318, 4559, 4575, 7010
BslFI GGGAC 8 cut(s) 404, 877, 1041, 2051, 2954, 4416, 7669, 7886
BsmBI CGTCTC 2 cut(s) 3029, 4151
BsmFI GGGAC 8 cut(s) 404, 877, 1041, 2051, 2954, 4416, 7669, 7886
BsmI GAATGC 6 cut(s) 232, 1598, 1986, 4748, 4984, 6076
Bso31I GGTCTC 3 cut(s) 2788, 6475, 8086
BsoBI CYCGRG 4 cut(s) 386, 3761, 5090, 6435
Bsp1286I GDGCHC 4 cut(s) 226, 262, 940, 6436
Bsp13I TCCGGA 1 cut(s) 4574
Bsp1407I TGTACA 6 cut(s) 129, 1575, 2211, 2818, 5032, 6249
Bsp19I CCATGG 1 cut(s) 6968
BspEI TCCGGA 1 cut(s) 4574
BspFNI CGCG 4 cut(s) 360, 3258, 7937, 8027
BspHI TCATGA 3 cut(s) 3204, 6592, 7248
BspMI ACCTGC 2 cut(s) 3962, 7877
BspQI GCTCTTC 1 cut(s) 7587
BspT107I GGYRCC 2 cut(s) 4525, 8021
BspTI CTTAAG 1 cut(s) 2774
BspTNI GGTCTC 3 cut(s) 2788, 6475, 8086
BsrDI GCAATG 9 cut(s) 380, 1752, 1894, 2853, 3037, 3812, 4862, 5076, 8056
BsrGI TGTACA 6 cut(s) 129, 1575, 2211, 2818, 5032, 6249
BssNAI GTATAC 1 cut(s) 6846
BssSI CACGAG 3 cut(s) 972, 1442, 5106
BssT1I CCWWGG 3 cut(s) 2538, 6753, 6968
Bst1107I GTATAC 1 cut(s) 6846
Bst2BI CACGAG 3 cut(s) 972, 1442, 5106
Bst6I CTCTTC 9 cut(s) 141, 1503, 1577, 2125, 3618, 4980, 5244, 5569, 7587
BstAFI CTTAAG 1 cut(s) 2774
BstAPI GCANNNNNTGC 1 cut(s) 266
BstAUI TGTACA 6 cut(s) 129, 1575, 2211, 2818, 5032, 6249
BstDSI CCRYGG 3 cut(s) 6968, 7499, 7935
BstEII GGTNACC 1 cut(s) 4169
BstENI CCTNNNNNAGG 3 cut(s) 864, 4013, 5828
BstFNI CGCG 4 cut(s) 360, 3258, 7937, 8027
BstH2I RGCGCY 2 cut(s) 567, 7147
BstHHI GCGC 5 cut(s) 566, 675, 4652, 5621, 7146
BstMCI CGRYCG 1 cut(s) 7257
BstNSI RCATGY 7 cut(s) 640, 1613, 3545, 3570, 4244, 4721, 7565
BstPI GGTNACC 1 cut(s) 4169
BstSFI CTRYAG 5 cut(s) 919, 1616, 5295, 6994, 7705
BstSLI GKGCMC 1 cut(s) 940
BstUI CGCG 4 cut(s) 360, 3258, 7937, 8027
BstX2I RGATCY 8 cut(s) 1750, 3274, 3803, 4207, 5651, 6949, 7952, 8033
BstXI CCANNNNNNTGG 2 cut(s) 6341, 7663
BstYI RGATCY 8 cut(s) 1750, 3274, 3803, 4207, 5651, 6949, 7952, 8033
BstZ17I GTATAC 1 cut(s) 6846
BstZI CGGCCG 1 cut(s) 7254
BtgI CCRYGG 3 cut(s) 6968, 7499, 7935
BtrI CACGTC 1 cut(s) 3039
BtsI GCAGTG 5 cut(s) 1258, 1710, 3147, 3454, 5556
BveI ACCTGC 2 cut(s) 3962, 7877
CaiI CAGNNNCTG 2 cut(s) 1504, 4210
CciI TCATGA 3 cut(s) 3204, 6592, 7248
CfoI GCGC 5 cut(s) 566, 675, 4652, 5621, 7146
Cfr42I CCGCGG 1 cut(s) 7938
Cfr9I CCCGGG 1 cut(s) 386
CpoI CGGWCCG 1 cut(s) 70
CseI GACGC 5 cut(s) 934, 2048, 6706, 7949, 8016
CsiI ACCWGGT 2 cut(s) 138, 6225
CspCI CAANNNNNGTGG 2 cut(s) 3066, 3101
CspI CGGWCCG 1 cut(s) 70
DraI TTTAAA 2 cut(s) 526, 1465
DraIII CACNNNGTG 1 cut(s) 5154
DriI GACNNNNNGTC 2 cut(s) 3510, 4218
EaeI YGGCCR 5 cut(s) 3074, 5145, 5565, 7254, 8002
EagI CGGCCG 1 cut(s) 7254
Eam1104I CTCTTC 9 cut(s) 141, 1503, 1577, 2125, 3618, 4980, 5244, 5569, 7587
Eam1105I GACNNNNNGTC 2 cut(s) 3510, 4218
EarI CTCTTC 9 cut(s) 141, 1503, 1577, 2125, 3618, 4980, 5244, 5569, 7587
Ecl136II GAGCTC 1 cut(s) 224
EclXI CGGCCG 1 cut(s) 7254
Eco130I CCWWGG 3 cut(s) 2538, 6753, 6968
Eco147I AGGCCT 2 cut(s) 2537, 6441
Eco24I GRGCYC 2 cut(s) 226, 6436
Eco31I GGTCTC 3 cut(s) 2788, 6475, 8086
Eco32I GATATC 4 cut(s) 2962, 3646, 6216, 7483
Eco47I GGWCC 8 cut(s) 70, 391, 854, 2099, 3106, 4669, 4840, 5193
Eco47III AGCGCT 1 cut(s) 565
Eco52I CGGCCG 1 cut(s) 7254
Eco53kI GAGCTC 1 cut(s) 224
Eco88I CYCGRG 4 cut(s) 386, 3761, 5090, 6435
Eco91I GGTNACC 1 cut(s) 4169
EcoICRI GAGCTC 1 cut(s) 224
EcoNI CCTNNNNNAGG 3 cut(s) 864, 4013, 5828
EcoO109I RGGNCCY 3 cut(s) 391, 854, 3106
EcoO65I GGTNACC 1 cut(s) 4169
EcoRI GAATTC 4 cut(s) 2426, 3175, 4757, 6766
EcoRV GATATC 4 cut(s) 2962, 3646, 6216, 7483
EcoT14I CCWWGG 3 cut(s) 2538, 6753, 6968
EcoT22I ATGCAT 1 cut(s) 1986
EcoT38I GRGCYC 2 cut(s) 226, 6436
ErhI CCWWGG 3 cut(s) 2538, 6753, 6968
Esp3I CGTCTC 2 cut(s) 3029, 4151
FalI AAGNNNNNCTT 6 cut(s) 550, 582, 3414, 3446, 4836, 4868
FaqI GGGAC 8 cut(s) 404, 877, 1041, 2051, 2954, 4416, 7669, 7886
FauI CCCGC 2 cut(s) 2360, 7942
FauNDI CATATG 1 cut(s) 5899
FblI GTMKAC 3 cut(s) 6018, 6845, 7447
FriOI GRGCYC 2 cut(s) 226, 6436
FspI TGCGCA 2 cut(s) 674, 5620
GlaI GCGC 5 cut(s) 565, 674, 4651, 5620, 7145
GsaI CCCAGC 3 cut(s) 1908, 7472, 7960
GsuI CTGGAG 6 cut(s) 358, 2812, 5418, 5630, 6974, 7114
HaeII RGCGCY 2 cut(s) 567, 7147
HapII CCGG 9 cut(s) 387, 733, 3097, 3991, 4021, 4318, 4559, 4575, 7010
HgaI GACGC 5 cut(s) 934, 2048, 6706, 7949, 8016
HhaI GCGC 5 cut(s) 566, 675, 4652, 5621, 7146
Hin6I GCGC 5 cut(s) 564, 673, 4650, 5619, 7144
HinP1I GCGC 5 cut(s) 564, 673, 4650, 5619, 7144
HincII GTYRAC 2 cut(s) 3187, 3894
HindII GTYRAC 2 cut(s) 3187, 3894
HindIII AAGCTT 9 cut(s) 1918, 2318, 2777, 3902, 4074, 5989, 7065, 7724, 7740
HpaI GTTAAC 1 cut(s) 3894
HpaII CCGG 9 cut(s) 387, 733, 3097, 3991, 4021, 4318, 4559, 4575, 7010
HpyCH4IV ACGT 5 cut(s) 1417, 2155, 3038, 3821, 8041
HpySE526I ACGT 5 cut(s) 1417, 2155, 3038, 3821, 8041
HspAI GCGC 5 cut(s) 564, 673, 4650, 5619, 7144
Kpn2I TCCGGA 1 cut(s) 4574
KpnI GGTACC 1 cut(s) 4529
KspAI GTTAAC 1 cut(s) 3894
KspI CCGCGG 1 cut(s) 7938
LguI GCTCTTC 1 cut(s) 7587
MabI ACCWGGT 2 cut(s) 138, 6225
MaeII ACGT 5 cut(s) 1417, 2155, 3038, 3821, 8041
MfeI CAATTG 6 cut(s) 1787, 2892, 3788, 4296, 4424, 7627
MflI RGATCY 8 cut(s) 1750, 3274, 3803, 4207, 5651, 6949, 7952, 8033
MhlI GDGCHC 4 cut(s) 226, 262, 940, 6436
MlsI TGGCCA 4 cut(s) 3076, 5147, 5567, 8004
MluNI TGGCCA 4 cut(s) 3076, 5147, 5567, 8004
MmeI TCCRAC 5 cut(s) 189, 1124, 2141, 4341, 5724
Mox20I TGGCCA 4 cut(s) 3076, 5147, 5567, 8004
Mph1103I ATGCAT 1 cut(s) 1986
MroI TCCGGA 1 cut(s) 4574
MroXI GAANNNNTTC 6 cut(s) 111, 150, 638, 2720, 3580, 7212
MscI TGGCCA 4 cut(s) 3076, 5147, 5567, 8004
MslI CAYNNNNRTG 6 cut(s) 4452, 5136, 5561, 6633, 7556, 7661
Msp20I TGGCCA 4 cut(s) 3076, 5147, 5567, 8004
MspA1I CMGCKG 3 cut(s) 1135, 1816, 7937
MspCI CTTAAG 1 cut(s) 2774
MspI CCGG 9 cut(s) 387, 733, 3097, 3991, 4021, 4318, 4559, 4575, 7010
MunI CAATTG 6 cut(s) 1787, 2892, 3788, 4296, 4424, 7627
Mva1269I GAATGC 6 cut(s) 232, 1598, 1986, 4748, 4984, 6076
MvnI CGCG 4 cut(s) 360, 3258, 7937, 8027
NciI CCSGG 7 cut(s) 387, 388, 734, 3097, 3992, 4022, 7011
NcoI CCATGG 1 cut(s) 6968
NdeI CATATG 1 cut(s) 5899
NsbI TGCGCA 2 cut(s) 674, 5620
NsiI ATGCAT 1 cut(s) 1986
NspI RCATGY 7 cut(s) 640, 1613, 3545, 3570, 4244, 4721, 7565
OliI CACNNNNGTG 1 cut(s) 5561
PaeI GCATGC 1 cut(s) 4721
PaeR7I CTCGAG 2 cut(s) 3761, 6435
PagI TCATGA 3 cut(s) 3204, 6592, 7248
PaqCI CACCTGC 2 cut(s) 3962, 7877
PceI AGGCCT 2 cut(s) 2537, 6441
PciI ACATGT 3 cut(s) 636, 1609, 3541
PciSI GCTCTTC 1 cut(s) 7587
PctI GAATGC 6 cut(s) 232, 1598, 1986, 4748, 4984, 6076
PdmI GAANNNNTTC 6 cut(s) 111, 150, 638, 2720, 3580, 7212
PflFI GACNNNGTC 1 cut(s) 2157
PflMI CCANNNNNTGG 1 cut(s) 3304
PfoI TCCNGGA 4 cut(s) 732, 1209, 2083, 4761
PpuMI RGGWCCY 3 cut(s) 391, 854, 3106
PscI ACATGT 3 cut(s) 636, 1609, 3541
PshBI ATTAAT 2 cut(s) 2115, 2451
PsiI TTATAA 3 cut(s) 2025, 3695, 3827
Psp124BI GAGCTC 1 cut(s) 226
Psp5II RGGWCCY 3 cut(s) 391, 854, 3106
PspEI GGTNACC 1 cut(s) 4169
PspFI CCCAGC 3 cut(s) 1904, 7468, 7956
PspPPI RGGWCCY 3 cut(s) 391, 854, 3106
PspXI VCTCGAGB 2 cut(s) 3761, 6435
PsrI GAACNNNNNNTAC 4 cut(s) 1596, 1628, 2271, 2303
PstNI CAGNNNCTG 2 cut(s) 1504, 4210
PsuI RGATCY 8 cut(s) 1750, 3274, 3803, 4207, 5651, 6949, 7952, 8033
PsyI GACNNNGTC 1 cut(s) 2157
RseI CAYNNNNRTG 6 cut(s) 4452, 5136, 5561, 6633, 7556, 7661
Rsr2I CGGWCCG 1 cut(s) 70
RsrII CGGWCCG 1 cut(s) 70
SacI GAGCTC 1 cut(s) 226
SacII CCGCGG 1 cut(s) 7938
SapI GCTCTTC 1 cut(s) 7587
ScaI AGTACT 2 cut(s) 511, 6161
SduI GDGCHC 4 cut(s) 226, 262, 940, 6436
SexAI ACCWGGT 2 cut(s) 138, 6225
SfcI CTRYAG 5 cut(s) 919, 1616, 5295, 6994, 7705
Sfr274I CTCGAG 2 cut(s) 3761, 6435
Sfr303I CCGCGG 1 cut(s) 7938
SgrBI CCGCGG 1 cut(s) 7938
SinI GGWCC 8 cut(s) 70, 391, 854, 2099, 3106, 4669, 4840, 5193
SlaI CTCGAG 2 cut(s) 3761, 6435
SmaI CCCGGG 1 cut(s) 388
SmiMI CAYNNNNRTG 6 cut(s) 4452, 5136, 5561, 6633, 7556, 7661
SmlI CTYRAG 8 cut(s) 225, 993, 2774, 3761, 3799, 5768, 6435, 7240
SmoI CTYRAG 8 cut(s) 225, 993, 2774, 3761, 3799, 5768, 6435, 7240
SpeI ACTAGT 2 cut(s) 1244, 7862
SphI GCATGC 1 cut(s) 4721
SseBI AGGCCT 2 cut(s) 2537, 6441
SspI AATATT 4 cut(s) 1704, 5531, 6668, 6747
SstI GAGCTC 1 cut(s) 226
StuI AGGCCT 2 cut(s) 2537, 6441
StyI CCWWGG 3 cut(s) 2538, 6753, 6968
TaiI ACGT 5 cut(s) 1420, 2158, 3041, 3824, 8044
TaqII GACCGA 1 cut(s) 2087
TauI GCSGC 4 cut(s) 1135, 6503, 7539, 8027
TspMI CCCGGG 1 cut(s) 386
Tth111I GACNNNGTC 1 cut(s) 2157
Van91I CCANNNNNTGG 1 cut(s) 3304
Vha464I CTTAAG 1 cut(s) 2774
VpaK11BI GGWCC 8 cut(s) 70, 391, 854, 2099, 3106, 4669, 4840, 5193
VspI ATTAAT 2 cut(s) 2115, 2451
XagI CCTNNNNNAGG 3 cut(s) 864, 4013, 5828
XbaI TCTAGA 2 cut(s) 2953, 4367
XceI RCATGY 7 cut(s) 640, 1613, 3545, 3570, 4244, 4721, 7565
XhoI CTCGAG 2 cut(s) 3761, 6435
XmaI CCCGGG 1 cut(s) 386
XmiI GTMKAC 3 cut(s) 6018, 6845, 7447
XmnI GAANNNNTTC 6 cut(s) 111, 150, 638, 2720, 3580, 7212
ZrmI AGTACT 2 cut(s) 511, 6161
Zsp2I ATGCAT 1 cut(s) 1986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.