Rmu_ssc0000238.1_g000032

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000238.1
OG0000223
Physical Location & Seq
Forward (+)
126694 .. 134467
7774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000238.1_g000032.1.cds

Sequence Viewer

Length: 4800 bp
atgatggaaggttcacacaagaaaaagcctaaaaaacccaaccttttggctgagactgtgttttcttggtcccttgataacattttcaatgaacgtctcttcaagaacaaggtggaaaagattcctgaatcatttcactctgtggagcattacctcgggtgttatctgtatcctttattggaagaaacaagagcacaggtccatgcaagtatggaaactatttacagagcaccatttgctaaagtagttgcttttgaaaaagtgaagccatatggaacaaagctatatgatatcaaggttgattattggcgaaacaggttaaatgaccgtggcaaagagccatatgaaactttgccaggtgatctttttgttttggcaaatgctaaacctgaaagtttttcagatttacaaagggtagggaggtcatgggcttttgcatcagtcactaaagtctcagaaaatgagaacgaggatgaaagtacttctctttattttaaaatcaaggcttccaaagaacttgaagttgtaaagggttcggcatcgctgtttatggtttttctggtgaacttaatcccgaatggaagaatatggaaagctttgcacatgtccaaaaacctgaacattatcaaggaagttttgtgcactgattctgtggctcatgaaaatctctgctctgaaaagaataatgacatcgtgaataaggggttagttcagagtttatcatctggtctgaatgaatcccaaacagggactgttttagcctgccttgaaatgctgcattgtcgtgagaagtctgctgttgaactaatttggggtcctcctggtactggaaaaactaaaacaattgcgactctacttgtaaccttgttacagatgaattgtaggactcttgtttgtgccccaacaaatgttgcaataactgaagttgcttctcgtgttgtaaagatgttgactgaagtacagtccagttctttgttttgttctttcggagaagttcttctatttgggaataaggagcgactcagagttggctcagatattgaagagatatatctagattaccgtctcaaaaggcttgccgagtgcttaggaccacagactggctggaggcattgctttgcttccatgatagattttcttgaagattgtgtttctcactaccataactttttggtaaatgagccaaccatagagaaggaaccaaagaccttaggtcaaatgaaaggaaaagaaagcaagtgtgacactcaagttggcgaggagaagtgcaaatcatttctggaatttattagagacagatttgtttctaatgcatcacctctaagaaattgtattgctatcttatgtacccacatggcgaaaaattacatttgtggagataatgtccaaaacatgattatgcttatcaacttggttgattcctttgaatcattgttgtttcaagataatgttgcttctgaagcacttgaagacattttctcttgttctgacattgacgacatatgggagacatatgctgataactcatttcatctattcatgaatagaagagaatgccttaaagtcttgcacactctgtttgactcccttagtgaacttcacattccgaattttgtgaagcaagagtctctaatggaattttgttttcaaaatgcctccttgatattttgcactgcatccagctcatataagttgcataaagtggcaatggagccgttgaacgttgttgttattgatgaagctgcacaattgaaagagtctgaatcaacaatcccccttcaactatggggtgtgaagcatgctgttctagttggggatgaatgtcagttaccagctacagtgaagagcattgtatctgatgaagcaggttttgcaagaagtttgttcgagaggttaagctcatttggtcgctcgaaacaccttctaaatatgcaatacaggatgcatccatcaataagtttcttcccaaattctagattctacaataacatgatcctggatgctccaaatcttaaaagtagaagccagaagaaacactatcttaaagggtcaatgtttggtccttattctttcatcaacgtaattggtggacgagaagagaaggatgaggatggacgtagtcgaaagaatatggtggaggttgctattgtttcacaaatactgcggaatctctacaaaaaatgggttgaatcaaagcagaaactcagtattggtatagtatctccatatgctgctcaagtagtcgcaatcgaggacaaacttgcacagaagtataacaatcttgatggctttacagtgaaggtaaagacagttgacgggttccagggtggggaagaggacatcattatattgtccactgtacgatccaattatcagcggtcacttgagtttgtttcaaaaccacaaagaattaatgttgctcttacaagggctaggcactgtctatggattttggggaatgaaaaaattctatgtcataatgagtctgtttggaaggccgtggtccttgatgccaaaaatcgccattgcttttttaatgtggatgaagacaaggatctagccaaggccatattggaggttaagaaacagtatgaccaactagatgatttgcttgatgctgacagtatacttttcagaagtgctagatggaaggtgctttttagtgataacttttttaagtcattcaagaaactgacatcagtccgtttgaagaggtcggtactaaatgttctactgaagcttgccagtggctggagaccaaagaagaagagttcagaaatgatttgtggtagctcttcactgatcttgaagaaatttaaggttgaaaatctgtatgttgtttgtacaacagacattgcaaaggactcaagatacattcaagtattgaagatttgggacatattgcccataggggatgtcccaactttggtcaatcgcctggaccgtataatgaacaaatatactgatgctttcattaatctctgtaaggagaaatgtcttgagggtgatttggaaattccaaagagctggccactttctttggaatttttgcggtttaaggattttagcttcactaaaatccagaatgattttgttggtgacacatgtgatggtagaagttacgctgagaattcacgggttagcgaaagtttgttgctgatgaagttctactcattatcatctggggtagtaaaccacttgctgtctgattgtgagggtagagaactggatcttccatttgaagttacggaccaagaaatggagattatccttcatcatagaagttccttcatagttggaaggtcaggaactgggaaaaccactgttttgacaatgaaattatttcagaaagaacagtggcaccagttggcagtgcaaggatactatactagtcaaagcagcaagattgaaaagagttcagcagctactgaggagaaagttctacaccagcttttcgttacagtgagtcctaagctgtgttatgccatcaagcaacatgtcttacacttgaaaagttttgcatgtggtggaagtcattcgactgaaagcagtttgattgatatgattgattttgatgaggatgaagctcaattcaacgatatccaagattcatttcatgaaattcctccccattcttaccctcttttcatcacatttcataagttcttgattatgcttgatggaacactgagcaactcatactttgaaagattccttgatgcaactgagcttactcatggtcatctacggaattcaagatcagctgccttgcagacttttataagaacaaaggaagtcagttatgagaggtttagttcattatactggccgcattttaataccgatttaacaaagaggcttgatgcttcaagagtctttacagagattatttcccatataaaaggtggcttgggagctatagaagcatgtgatggtaaactcagtcgagaggattatgtacaactgtcagagatccgagtttccattctaaccaggcaagagagagaagttatatatgatatttttcagatgtatgaaaaaatgaagatggaaaatggggaatttgatcttgctgattttgtaattgatcttcaccatcgactgatgcatgaaaagtatgagggggatcatatggactttgtttatgttgatgaggttcaagatctaacaatgagtcaaattgccttgtttaaacatatgtgccacaatgttgaagatggttttgttttttccggtgacactgcacaaacaattgcaaggggtattgatttcaggtttcaagaattacgacatctattctacaagaagtttgtgttggagtcaagaaccaataagcacgatgaaagtaaggaaaaaggccaagtctcggaaattcttcacttgactcaaaactttcgtacccatgatggaatcctcaagctatcacaaagcattattgacctactatatcatttctttcccctttccattgatgtcttaaaacctgaaagtagtttgatatttggggaagctccggtattgcttgaatctgaagaaaatgaaaatgcaatcgtaaagatttttggaaatactgggaatatagttggatttggtgcagagcaggtcattttggtccgagatgatagtgctcgaaaagagatatccaaatttatagggaagcatgctcttgttctaaccattgtggagtgcaagggccttgagtttcaggtgattaccgtatctgttaacttctttagttgcacagaagtaatcactgtttttaatttagtacttttatttttgttttttaacctatcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

1599

Amino Acids

182.92

Weight (kDa)

6.26

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3782
Acc36I ACCTGC 2 cut(s) 1856, 4591
AccB1I GGYRCC 1 cut(s) 3360
AccB7I CCANNNNNTGG 3 cut(s) 1100, 2751, 3259
AccI GTMKAC 1 cut(s) 2626
AciI CCGC 4 cut(s) 2164, 2377, 3052, 3830
AclI AACGTT 1 cut(s) 1722
AclWI GGATC 6 cut(s) 1987, 2358, 2562, 3237, 3967, 4134
AcoI YGGCCR 2 cut(s) 3029, 3827
AcuI CTGAAG 5 cut(s) 942, 975, 1479, 2756, 4551
AdeI CACNNNGTG 1 cut(s) 142
AfiI CCNNNNNNNGG 8 cut(s) 747, 827, 1100, 2329, 2751, 2926, 3259, 4366
AflIII ACRYGT 3 cut(s) 603, 3104, 3496
AhdI GACNNNNNGTC 1 cut(s) 1212
AhlI ACTAGT 1 cut(s) 3389
AjnI CCWGG 6 cut(s) 355, 820, 1995, 2322, 2937, 3992
AjuI GAANNNNNNNTTGG 4 cut(s) 3597, 3629, 4298, 4330
Alw21I GWGCWC 4 cut(s) 196, 232, 644, 4630
Alw26I GTCTC 9 cut(s) 47, 101, 457, 1070, 1287, 1502, 1632, 2749, 4369
Alw44I GTGCAC 1 cut(s) 640
AlwI GGATC 6 cut(s) 1987, 2358, 2562, 3237, 3967, 4134
AlwNI CAGNNNCTG 4 cut(s) 752, 2751, 3311, 3428
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 6 cut(s) 2496, 2565, 3029, 3827, 4357, 4693
ApaLI GTGCAC 1 cut(s) 640
ApeKI GCWGC 6 cut(s) 775, 1742, 2231, 3399, 3422, 3764
AseI ATTAAT 2 cut(s) 2412, 2976
Asp700I GAANNNNTTC 6 cut(s) 120, 132, 996, 2466, 3535, 4374
AsuHPI GGTGA 8 cut(s) 371, 574, 1308, 3017, 3110, 4085, 4247, 4720
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 9 cut(s) 69, 199, 815, 1091, 2060, 2503, 2941, 3250, 4612
AxyI CCTNAGG 1 cut(s) 1210
BaeGI GKGCMC 2 cut(s) 644, 901
BaeI ACNNNNGTAYC 2 cut(s) 4381, 4414
BalI TGGCCA 1 cut(s) 3031
BanI GGYRCC 1 cut(s) 3360
BarI GAAGNNNNNNTAC 2 cut(s) 4074, 4106
BauI CACGAG 1 cut(s) 933
BbsI GAAGAC 2 cut(s) 1476, 2553
Bbv12I GWGCWC 4 cut(s) 196, 232, 644, 4630
BbvI GCAGC 6 cut(s) 762, 1729, 2218, 3411, 3434, 3751
BceAI ACGGC 2 cut(s) 1699, 2483
BciT130I CCWGG 6 cut(s) 357, 822, 1997, 2324, 2939, 3994
BciVI GTATCC 2 cut(s) 180, 3374
BcoDI GTCTC 9 cut(s) 47, 101, 457, 1070, 1287, 1502, 1632, 2749, 4369
BcuI ACTAGT 1 cut(s) 3389
BfaI CTAG 8 cut(s) 1055, 1808, 1974, 2433, 2558, 2600, 2643, 3390
BfmI CTRYAG 2 cut(s) 1836, 3918
BfuAI ACCTGC 2 cut(s) 1856, 4591
BfuI GTATCC 2 cut(s) 180, 3374
BglII AGATCT 1 cut(s) 4162
BisI GCNGC 7 cut(s) 776, 1743, 2232, 3400, 3423, 3765, 3830
BlsI GCNGC 7 cut(s) 777, 1744, 2233, 3401, 3424, 3766, 3831
BmcAI AGTACT 2 cut(s) 481, 4770
Bme1390I CCNGG 6 cut(s) 357, 822, 1997, 2324, 2939, 3994
Bme18I GGWCC 9 cut(s) 69, 199, 815, 1091, 2060, 2503, 2941, 3250, 4612
BmeRI GACNNNNNGTC 1 cut(s) 1212
BmeT110I CYCGRG 1 cut(s) 155
BmiI GGNNCC 6 cut(s) 71, 816, 1200, 1713, 2321, 3362
BmrFI CCNGG 6 cut(s) 357, 822, 1997, 2324, 2939, 3994
BmrI ACTGGG 2 cut(s) 3321, 4581
BmuI ACTGGG 2 cut(s) 3321, 4581
BoxI GACNNNNGTC 1 cut(s) 2699
BpiI GAAGAC 2 cut(s) 1476, 2553
BpmI CTGGAG 2 cut(s) 1126, 2773
Bpu10I CCTNAGC 2 cut(s) 1087, 3471
BpuEI CTTGAG 7 cut(s) 1233, 2220, 2405, 2851, 3020, 4400, 4718
BsaI GGTCTC 1 cut(s) 2749
BsaJI CCNNGG 5 cut(s) 154, 328, 2323, 2499, 2562
BsaWI WCCGGW 2 cut(s) 4232, 4513
BsaXI ACNNNNNCTCC 2 cut(s) 1368, 1398
Bsc4I CCNNNNNNNGG 8 cut(s) 747, 827, 1100, 2329, 2751, 2926, 3259, 4366
Bse1I ACTGG 9 cut(s) 832, 966, 1105, 2745, 3231, 3316, 3364, 3830, 4576
Bse21I CCTNAGG 1 cut(s) 1210
Bse3DI GCAATG 4 cut(s) 1111, 1713, 2524, 2853
BseBI CCWGG 6 cut(s) 357, 822, 1997, 2324, 2939, 3994
BseDI CCNNGG 5 cut(s) 154, 328, 2323, 2499, 2562
BseLI CCNNNNNNNGG 8 cut(s) 747, 827, 1100, 2329, 2751, 2926, 3259, 4366
BseMI GCAATG 4 cut(s) 1111, 1713, 2524, 2853
BseNI ACTGG 9 cut(s) 832, 966, 1105, 2745, 3231, 3316, 3364, 3830, 4576
BseRI GAGGAG 2 cut(s) 1274, 3446
BseSI GKGCMC 2 cut(s) 644, 901
BseXI GCAGC 6 cut(s) 762, 1729, 2218, 3411, 3434, 3751
BsgI GTGCAG 3 cut(s) 1728, 4227, 4614
BshFI GGCC 6 cut(s) 2498, 2567, 3031, 3829, 4359, 4695
BshNI GGYRCC 1 cut(s) 3360
BsiHKAI GWGCWC 4 cut(s) 196, 232, 644, 4630
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 4233, 4514
BslFI GGGAC 4 cut(s) 55, 763, 2903, 2909
BslI CCNNNNNNNGG 8 cut(s) 747, 827, 1100, 2329, 2751, 2926, 3259, 4366
BsmAI GTCTC 9 cut(s) 47, 101, 457, 1070, 1287, 1502, 1632, 2749, 4369
BsmBI CGTCTC 2 cut(s) 101, 1070
BsmFI GGGAC 4 cut(s) 55, 763, 2903, 2909
BsmI GAATGC 1 cut(s) 1559
BsnI GGCC 6 cut(s) 2498, 2567, 3031, 3829, 4359, 4695
Bso31I GGTCTC 1 cut(s) 2749
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 5 cut(s) 196, 232, 644, 901, 4630
Bsp1407I TGTACA 2 cut(s) 2843, 3958
BspACI CCGC 4 cut(s) 2164, 2377, 3052, 3830
BspANI GGCC 6 cut(s) 2498, 2567, 3031, 3829, 4359, 4695
BspHI TCATGA 3 cut(s) 658, 1539, 3616
BspLI GGNNCC 6 cut(s) 71, 816, 1200, 1713, 2321, 3362
BspMI ACCTGC 2 cut(s) 1856, 4591
BspPI GGATC 6 cut(s) 1987, 2358, 2562, 3237, 3967, 4134
BspQI GCTCTTC 2 cut(s) 1838, 2800
BspT107I GGYRCC 1 cut(s) 3360
BspTNI GGTCTC 1 cut(s) 2749
BsrDI GCAATG 4 cut(s) 1111, 1713, 2524, 2853
BsrGI TGTACA 2 cut(s) 2843, 3958
BsrI ACTGG 9 cut(s) 832, 966, 1105, 2745, 3231, 3316, 3364, 3830, 4576
BssECI CCNNGG 5 cut(s) 154, 328, 2323, 2499, 2562
BssNAI GTATAC 1 cut(s) 2627
BssSI CACGAG 1 cut(s) 933
BssT1I CCWWGG 1 cut(s) 2562
Bst1107I GTATAC 1 cut(s) 2627
Bst2BI CACGAG 1 cut(s) 933
Bst2UI CCWGG 6 cut(s) 357, 822, 1997, 2324, 2939, 3994
Bst6I CTCTTC 9 cut(s) 104, 1038, 1543, 1838, 2091, 2328, 2705, 2762, 2800
BstAPI GCANNNNNTGC 2 cut(s) 236, 1871
BstAUI TGTACA 2 cut(s) 2843, 3958
BstC8I GCNNGC 6 cut(s) 763, 1077, 1800, 2742, 3029, 4662
BstDSI CCRYGG 2 cut(s) 328, 2499
BstMAI GTCTC 9 cut(s) 47, 101, 457, 1070, 1287, 1502, 1632, 2749, 4369
BstMWI GCNNNNNNNGC 4 cut(s) 236, 1460, 1871, 3923
BstNI CCWGG 6 cut(s) 357, 822, 1997, 2324, 2939, 3994
BstNSI RCATGY 7 cut(s) 607, 1802, 3108, 3500, 3525, 3930, 4664
BstPAI GACNNNNGTC 1 cut(s) 2699
BstSCI CCNGG 6 cut(s) 355, 820, 1995, 2322, 2937, 3992
BstSFI CTRYAG 2 cut(s) 1836, 3918
BstSLI GKGCMC 2 cut(s) 644, 901
BstV1I GCAGC 6 cut(s) 762, 1729, 2218, 3411, 3434, 3751
BstV2I GAAGAC 2 cut(s) 1476, 2553
BstX2I RGATCY 4 cut(s) 2554, 3229, 3972, 4162
BstXI CCANNNNNNTGG 2 cut(s) 46, 3027
BstYI RGATCY 4 cut(s) 2554, 3229, 3972, 4162
BstZ17I GTATAC 1 cut(s) 2627
Bsu36I CCTNAGG 1 cut(s) 1210
BsuI GTATCC 2 cut(s) 180, 3374
BsuRI GGCC 6 cut(s) 2498, 2567, 3031, 3829, 4359, 4695
BtgI CCRYGG 2 cut(s) 328, 2499
BtgZI GCGATG 1 cut(s) 525
BtsI GCAGTG 3 cut(s) 1671, 3378, 4239
BveI ACCTGC 2 cut(s) 1856, 4591
Cac8I GCNNGC 6 cut(s) 763, 1077, 1800, 2742, 3029, 4662
CaiI CAGNNNCTG 4 cut(s) 752, 2751, 3311, 3428
CciI TCATGA 3 cut(s) 658, 1539, 3616
CspCI CAANNNNNGTGG 2 cut(s) 3021, 3056
DraI TTTAAA 2 cut(s) 496, 4192
DraIII CACNNNGTG 1 cut(s) 142
DriI GACNNNNNGTC 1 cut(s) 1212
EaeI YGGCCR 2 cut(s) 3029, 3827
Eam1104I CTCTTC 9 cut(s) 104, 1038, 1543, 1838, 2091, 2328, 2705, 2762, 2800
Eam1105I GACNNNNNGTC 1 cut(s) 1212
EarI CTCTTC 9 cut(s) 104, 1038, 1543, 1838, 2091, 2328, 2705, 2762, 2800
Eco130I CCWWGG 1 cut(s) 2562
Eco31I GGTCTC 1 cut(s) 2749
Eco32I GATATC 3 cut(s) 292, 3601, 4641
Eco47I GGWCC 9 cut(s) 69, 199, 815, 1091, 2060, 2503, 2941, 3250, 4612
Eco57I CTGAAG 5 cut(s) 942, 975, 1479, 2756, 4551
Eco81I CCTNAGG 1 cut(s) 1210
Eco88I CYCGRG 1 cut(s) 155
EcoO109I RGGNCCY 2 cut(s) 815, 4693
EcoRI GAATTC 2 cut(s) 3130, 3751
EcoRII CCWGG 6 cut(s) 355, 820, 1995, 2322, 2937, 3992
EcoRV GATATC 3 cut(s) 292, 3601, 4641
EcoT14I CCWWGG 1 cut(s) 2562
EcoT22I ATGCAT 3 cut(s) 1315, 1947, 4110
ErhI CCWWGG 1 cut(s) 2562
Esp3I CGTCTC 2 cut(s) 101, 1070
FaqI GGGAC 4 cut(s) 55, 763, 2903, 2909
FauNDI CATATG 7 cut(s) 271, 343, 1502, 1513, 2227, 4131, 4197
FblI GTMKAC 1 cut(s) 2626
Fnu4HI GCNGC 7 cut(s) 776, 1743, 2232, 3400, 3423, 3765, 3830
Fsp4HI GCNGC 7 cut(s) 776, 1743, 2232, 3400, 3423, 3765, 3830
FspBI CTAG 8 cut(s) 1055, 1808, 1974, 2433, 2558, 2600, 2643, 3390
GluI GCNGC 7 cut(s) 776, 1743, 2232, 3400, 3423, 3765, 3830
GsuI CTGGAG 2 cut(s) 1126, 2773
HaeIII GGCC 6 cut(s) 2498, 2567, 3031, 3829, 4359, 4695
HapII CCGG 2 cut(s) 4233, 4514
HincII GTYRAC 3 cut(s) 951, 2314, 4726
HindII GTYRAC 3 cut(s) 951, 2314, 4726
HindIII AAGCTT 2 cut(s) 594, 2738
HpaI GTTAAC 1 cut(s) 4726
HpaII CCGG 2 cut(s) 4233, 4514
HphI GGTGA 8 cut(s) 371, 574, 1308, 3017, 3110, 4085, 4247, 4720
HpyCH4IV ACGT 4 cut(s) 94, 1722, 2079, 2116
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 1460, 1871, 3923
HpySE526I ACGT 4 cut(s) 94, 1722, 2079, 2116
KspAI GTTAAC 1 cut(s) 4726
LguI GCTCTTC 2 cut(s) 1838, 2800
LmnI GCTCC 6 cut(s) 145, 1015, 1711, 2008, 3914, 4516
Lsp1109I GCAGC 6 cut(s) 762, 1729, 2218, 3411, 3434, 3751
MaeI CTAG 8 cut(s) 1055, 1808, 1974, 2433, 2558, 2600, 2643, 3390
MaeII ACGT 4 cut(s) 94, 1722, 2079, 2116
MfeI CAATTG 3 cut(s) 843, 1748, 4251
MflI RGATCY 4 cut(s) 2554, 3229, 3972, 4162
MhlI GDGCHC 5 cut(s) 196, 232, 644, 901, 4630
MlsI TGGCCA 1 cut(s) 3031
MluNI TGGCCA 1 cut(s) 3031
MmeI TCCRAC 3 cut(s) 3277, 4296, 4564
Mox20I TGGCCA 1 cut(s) 3031
Mph1103I ATGCAT 3 cut(s) 1315, 1947, 4110
MroXI GAANNNNTTC 6 cut(s) 120, 132, 996, 2466, 3535, 4374
MscI TGGCCA 1 cut(s) 3031
MslI CAYNNNNRTG 2 cut(s) 783, 1397
Msp20I TGGCCA 1 cut(s) 3031
MspA1I CMGCKG 2 cut(s) 2377, 3764
MspI CCGG 2 cut(s) 4233, 4514
MspR9I CCNGG 6 cut(s) 357, 822, 1997, 2324, 2939, 3994
MssI GTTTAAAC 1 cut(s) 4192
MunI CAATTG 3 cut(s) 843, 1748, 4251
Mva1269I GAATGC 1 cut(s) 1559
MvaI CCWGG 6 cut(s) 357, 822, 1997, 2324, 2939, 3994
MwoI GCNNNNNNNGC 4 cut(s) 236, 1460, 1871, 3923
NdeI CATATG 7 cut(s) 271, 343, 1502, 1513, 2227, 4131, 4197
NlaIV GGNNCC 6 cut(s) 71, 816, 1200, 1713, 2321, 3362
NmeAIII GCCGAG 1 cut(s) 1105
NmuCI GTSAC 5 cut(s) 442, 1241, 2379, 3098, 4235
NsiI ATGCAT 3 cut(s) 1315, 1947, 4110
NspI RCATGY 7 cut(s) 607, 1802, 3108, 3500, 3525, 3930, 4664
PaeI GCATGC 2 cut(s) 1802, 4664
PagI TCATGA 3 cut(s) 658, 1539, 3616
PciI ACATGT 3 cut(s) 603, 3104, 3496
PciSI GCTCTTC 2 cut(s) 1838, 2800
PcsI WCGNNNNNNNCGW 1 cut(s) 2941
PctI GAATGC 1 cut(s) 1559
PdmI GAANNNNTTC 6 cut(s) 120, 132, 996, 2466, 3535, 4374
PflFI GACNNNGTC 1 cut(s) 2118
PflMI CCANNNNNTGG 3 cut(s) 1100, 2751, 3259
PfoI TCCNGGA 1 cut(s) 1995
PkrI GCNGC 7 cut(s) 777, 1744, 2233, 3401, 3424, 3766, 3831
PmeI GTTTAAAC 1 cut(s) 4192
PpuMI RGGWCCY 1 cut(s) 815
PscI ACATGT 3 cut(s) 603, 3104, 3496
PshAI GACNNNNGTC 1 cut(s) 2699
PshBI ATTAAT 2 cut(s) 2412, 2976
PsiI TTATAA 1 cut(s) 3782
Psp1406I AACGTT 1 cut(s) 1722
Psp5II RGGWCCY 1 cut(s) 815
Psp6I CCWGG 6 cut(s) 355, 820, 1995, 2322, 2937, 3992
PspGI CCWGG 6 cut(s) 355, 820, 1995, 2322, 2937, 3992
PspN4I GGNNCC 6 cut(s) 71, 816, 1200, 1713, 2321, 3362
PspPPI RGGWCCY 1 cut(s) 815
PsrI GAACNNNNNNTAC 2 cut(s) 2712, 2744
PstNI CAGNNNCTG 4 cut(s) 752, 2751, 3311, 3428
PsuI RGATCY 4 cut(s) 2554, 3229, 3972, 4162
PsyI GACNNNGTC 1 cut(s) 2118
PvuII CAGCTG 1 cut(s) 3764
RseI CAYNNNNRTG 2 cut(s) 783, 1397
SapI GCTCTTC 2 cut(s) 1838, 2800
SatI GCNGC 7 cut(s) 776, 1743, 2232, 3400, 3423, 3765, 3830
ScaI AGTACT 2 cut(s) 481, 4770
ScrFI CCNGG 6 cut(s) 357, 822, 1997, 2324, 2939, 3994
SduI GDGCHC 5 cut(s) 196, 232, 644, 901, 4630
SfcI CTRYAG 2 cut(s) 1836, 3918
SinI GGWCC 9 cut(s) 69, 199, 815, 1091, 2060, 2503, 2941, 3250, 4612
SmiMI CAYNNNNRTG 2 cut(s) 783, 1397
SmlI CTYRAG 7 cut(s) 1248, 2235, 2384, 2866, 2999, 4415, 4697
SmoI CTYRAG 7 cut(s) 1248, 2235, 2384, 2866, 2999, 4415, 4697
SpeI ACTAGT 1 cut(s) 3389
SphI GCATGC 2 cut(s) 1802, 4664
SsiI CCGC 4 cut(s) 2164, 2377, 3052, 3830
SspMI CTAG 8 cut(s) 1055, 1808, 1974, 2433, 2558, 2600, 2643, 3390
StyD4I CCNGG 6 cut(s) 355, 820, 1995, 2322, 2937, 3992
StyI CCWWGG 1 cut(s) 2562
TaiI ACGT 4 cut(s) 97, 1725, 2082, 2119
TaqI TCGA 8 cut(s) 1887, 1913, 2122, 2250, 3539, 3946, 4099, 4630
TatI WGTACW 5 cut(s) 479, 958, 2843, 3958, 4768
TauI GCSGC 1 cut(s) 3832
TseFI GTSAC 5 cut(s) 442, 1241, 2379, 3098, 4235
TseI GCWGC 6 cut(s) 775, 1742, 2231, 3399, 3422, 3764
Tsp45I GTSAC 5 cut(s) 442, 1241, 2379, 3098, 4235
TspGWI ACGGA 3 cut(s) 2693, 3263, 3763
Tth111I GACNNNGTC 1 cut(s) 2118
Van91I CCANNNNNTGG 3 cut(s) 1100, 2751, 3259
VneI GTGCAC 1 cut(s) 640
VpaK11BI GGWCC 9 cut(s) 69, 199, 815, 1091, 2060, 2503, 2941, 3250, 4612
VspI ATTAAT 2 cut(s) 2412, 2976
XbaI TCTAGA 2 cut(s) 1054, 1973
XceI RCATGY 7 cut(s) 607, 1802, 3108, 3500, 3525, 3930, 4664
XcmI CCANNNNNNNNNTGG 3 cut(s) 1101, 2569, 3902
XmiI GTMKAC 1 cut(s) 2626
XmnI GAANNNNTTC 6 cut(s) 120, 132, 996, 2466, 3535, 4374
XspI CTAG 8 cut(s) 1055, 1808, 1974, 2433, 2558, 2600, 2643, 3390
ZrmI AGTACT 2 cut(s) 481, 4770
Zsp2I ATGCAT 3 cut(s) 1315, 1947, 4110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.