TPR and ankyrin repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1745, 2018, 3467 |
| AarI | CACCTGC | 1 cut(s) | 4267 |
| Acc16I | TGCGCA | 1 cut(s) | 5245 |
| Acc36I | ACCTGC | 3 cut(s) | 2556, 4267, 5450 |
| AccB1I | GGYRCC | 1 cut(s) | 3045 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 893, 2433, 6907 |
| AccBSI | CCGCTC | 1 cut(s) | 5021 |
| AccI | GTMKAC | 3 cut(s) | 1100, 1179, 7299 |
| AccII | CGCG | 2 cut(s) | 4492, 6945 |
| AclI | AACGTT | 1 cut(s) | 5616 |
| AclWI | GGATC | 6 cut(s) | 2028, 2754, 4876, 5187, 6521, 7084 |
| AcoI | YGGCCR | 3 cut(s) | 231, 3424, 4764 |
| AcuI | CTGAAG | 7 cut(s) | 1281, 2378, 2438, 3138, 4037, 4562, 6317 |
| AcvI | CACGTG | 1 cut(s) | 1288 |
| AdeI | CACNNNGTG | 1 cut(s) | 4773 |
| AflII | CTTAAG | 1 cut(s) | 3595 |
| AflIII | ACRYGT | 4 cut(s) | 396, 3184, 3882, 7358 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 3153, 6490 |
| AjnI | CCWGG | 8 cut(s) | 613, 1585, 1714, 2619, 4683, 6197, 6751, 6855 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 3042, 3074, 3285, 3317, 3983, 4015 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 959, 991 |
| Alw21I | GWGCWC | 9 cut(s) | 22, 694, 1042, 1119, 4306, 4535, 6247, 6561, 7213 |
| AlwI | GGATC | 6 cut(s) | 2028, 2754, 4876, 5187, 6521, 7084 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2996, 3116, 4582, 6334 |
| Ama87I | CYCGRG | 3 cut(s) | 4725, 6530, 7253 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 2696, 2728, 4572, 4604, 5573, 5605 |
| AseI | ATTAAT | 3 cut(s) | 2658, 5151, 5279 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 458, 789, 2140, 2363, 4050, 6192, 6608, 6915 |
| AspLEI | GCGC | 4 cut(s) | 3135, 5246, 5636, 6780 |
| AsuC2I | CCSGG | 5 cut(s) | 147, 2737, 3632, 3662, 5943 |
| AsuII | TTCGAA | 1 cut(s) | 288 |
| AvaI | CYCGRG | 3 cut(s) | 4725, 6530, 7253 |
| AvaII | GGWCC | 7 cut(s) | 608, 1730, 1784, 2173, 3658, 6031, 6638 |
| BaeGI | GKGCMC | 1 cut(s) | 1308 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 4106, 4139, 5938, 5971 |
| BalI | TGGCCA | 2 cut(s) | 3426, 4766 |
| BanI | GGYRCC | 1 cut(s) | 3045 |
| BanII | GRGCYC | 3 cut(s) | 6247, 6561, 7213 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3759, 3791 |
| BauI | CACGAG | 1 cut(s) | 7075 |
| BbrPI | CACGTG | 1 cut(s) | 1288 |
| BbsI | GAAGAC | 4 cut(s) | 2223, 4611, 5760, 6918 |
| Bbv12I | GWGCWC | 9 cut(s) | 22, 694, 1042, 1119, 4306, 4535, 6247, 6561, 7213 |
| BceAI | ACGGC | 4 cut(s) | 575, 840, 4689, 7323 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1464, 1498 |
| BciT130I | CCWGG | 8 cut(s) | 615, 1587, 1716, 2621, 4685, 6199, 6753, 6857 |
| BciVI | GTATCC | 1 cut(s) | 2590 |
| BclI | TGATCA | 2 cut(s) | 3811, 6522 |
| BcnI | CCSGG | 5 cut(s) | 147, 2737, 3632, 3662, 5943 |
| BfmI | CTRYAG | 9 cut(s) | 662, 1104, 2549, 3070, 3108, 3603, 5061, 5922, 6326 |
| BfoI | RGCGCY | 1 cut(s) | 6781 |
| BfrI | CTTAAG | 1 cut(s) | 3595 |
| BfuAI | ACCTGC | 3 cut(s) | 2556, 4267, 5450 |
| BfuI | GTATCC | 1 cut(s) | 2590 |
| BglII | AGATCT | 4 cut(s) | 2328, 2571, 3847, 5812 |
| BlpI | GCTNAGC | 1 cut(s) | 1205 |
| Bme18I | GGWCC | 7 cut(s) | 608, 1730, 1784, 2173, 3658, 6031, 6638 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 3153, 6490 |
| BmeT110I | CYCGRG | 3 cut(s) | 4725, 6530, 7253 |
| BmrI | ACTGGG | 5 cut(s) | 549, 1782, 3006, 4810, 6360 |
| BmuI | ACTGGG | 5 cut(s) | 549, 1782, 3006, 4810, 6360 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2381 |
| BpiI | GAAGAC | 4 cut(s) | 2223, 4611, 5760, 6918 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2585, 2617 |
| BpmI | CTGGAG | 5 cut(s) | 735, 2933, 4173, 6745, 7227 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3159, 5187 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1205 |
| Bpu14I | TTCGAA | 1 cut(s) | 288 |
| BpuEI | CTTGAG | 9 cut(s) | 15, 953, 1026, 1103, 1227, 1890, 3773, 6789, 7199 |
| BpuMI | CCSGG | 5 cut(s) | 147, 2737, 3632, 3662, 5943 |
| Bsa29I | ATCGAT | 1 cut(s) | 4880 |
| BsaAI | YACGTR | 1 cut(s) | 1288 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2688, 5760, 6108 |
| BsaI | GGTCTC | 2 cut(s) | 2431, 6100 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 5802, 5832 |
| Bse118I | RCCGGY | 1 cut(s) | 1209 |
| Bse3DI | GCAATG | 5 cut(s) | 1512, 2535, 4695, 4836, 6525 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2688, 5760, 6108 |
| BseBI | CCWGG | 8 cut(s) | 615, 1587, 1716, 2621, 4685, 6199, 6753, 6857 |
| BseCI | ATCGAT | 1 cut(s) | 4880 |
| BseJI | GATNNNNATC | 3 cut(s) | 2688, 5760, 6108 |
| BseMI | GCAATG | 5 cut(s) | 1512, 2535, 4695, 4836, 6525 |
| BseMII | CTCAG | 7 cut(s) | 1888, 2780, 3640, 5106, 5628, 6143, 6546 |
| BseRI | GAGGAG | 4 cut(s) | 4727, 5582, 7174, 7177 |
| BseSI | GKGCMC | 1 cut(s) | 1308 |
| BseYI | CCCAGC | 3 cut(s) | 54, 5412, 7102 |
| BsgI | GTGCAG | 4 cut(s) | 846, 1527, 4290, 6259 |
| Bsh1236I | CGCG | 2 cut(s) | 4492, 6945 |
| BshNI | GGYRCC | 1 cut(s) | 3045 |
| BshVI | ATCGAT | 1 cut(s) | 4880 |
| BsiHKAI | GWGCWC | 9 cut(s) | 22, 694, 1042, 1119, 4306, 4535, 6247, 6561, 7213 |
| BsiHKCI | CYCGRG | 3 cut(s) | 4725, 6530, 7253 |
| BsiSI | CCGG | 8 cut(s) | 147, 1210, 2737, 3631, 3661, 4824, 5942, 7453 |
| BsiWI | CGTACG | 1 cut(s) | 2029 |
| BslFI | GGGAC | 5 cut(s) | 230, 2591, 2997, 5339, 6017 |
| BsmFI | GGGAC | 5 cut(s) | 230, 2591, 2997, 5339, 6017 |
| BsmI | GAATGC | 3 cut(s) | 571, 1031, 5824 |
| Bso31I | GGTCTC | 2 cut(s) | 2431, 6100 |
| BsoBI | CYCGRG | 3 cut(s) | 4725, 6530, 7253 |
| Bsp119I | TTCGAA | 1 cut(s) | 288 |
| Bsp1407I | TGTACA | 2 cut(s) | 1842, 5959 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1205 |
| Bsp19I | CCATGG | 3 cut(s) | 6599, 6882, 7133 |
| Bsp68I | TCGCGA | 1 cut(s) | 6945 |
| BspCNI | CTCAG | 7 cut(s) | 1887, 2779, 3639, 5105, 5629, 6142, 6547 |
| BspDI | ATCGAT | 1 cut(s) | 4880 |
| BspFNI | CGCG | 2 cut(s) | 4492, 6945 |
| BspHI | TCATGA | 3 cut(s) | 978, 4227, 4744 |
| BspMAI | CTGCAG | 4 cut(s) | 1108, 2553, 3112, 5065 |
| BspMI | ACCTGC | 3 cut(s) | 2556, 4267, 5450 |
| BspPI | GGATC | 6 cut(s) | 2028, 2754, 4876, 5187, 6521, 7084 |
| BspQI | GCTCTTC | 1 cut(s) | 2482 |
| BspT104I | TTCGAA | 1 cut(s) | 288 |
| BspT107I | GGYRCC | 1 cut(s) | 3045 |
| BspTI | CTTAAG | 1 cut(s) | 3595 |
| BspTNI | GGTCTC | 2 cut(s) | 2431, 6100 |
| BsrBI | CCGCTC | 1 cut(s) | 5021 |
| BsrDI | GCAATG | 5 cut(s) | 1512, 2535, 4695, 4836, 6525 |
| BsrFI | RCCGGY | 1 cut(s) | 1209 |
| BsrGI | TGTACA | 2 cut(s) | 1842, 5959 |
| BssAI | RCCGGY | 1 cut(s) | 1209 |
| BssSI | CACGAG | 1 cut(s) | 7075 |
| BssT1I | CCWWGG | 7 cut(s) | 2232, 5076, 5449, 6302, 6599, 6882, 7133 |
| Bst2BI | CACGAG | 1 cut(s) | 7075 |
| Bst2UI | CCWGG | 8 cut(s) | 615, 1587, 1716, 2621, 4685, 6199, 6753, 6857 |
| BstAFI | CTTAAG | 1 cut(s) | 3595 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 26, 4931 |
| BstAUI | TGTACA | 2 cut(s) | 1842, 5959 |
| BstBAI | YACGTR | 1 cut(s) | 1288 |
| BstBI | TTCGAA | 1 cut(s) | 288 |
| BstDSI | CCRYGG | 3 cut(s) | 6599, 6882, 7133 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 5453 |
| BstFNI | CGCG | 2 cut(s) | 4492, 6945 |
| BstH2I | RGCGCY | 1 cut(s) | 6781 |
| BstHHI | GCGC | 4 cut(s) | 3135, 5246, 5636, 6780 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 26, 551, 1670, 3608, 4660, 4931, 5408 |
| BstNI | CCWGG | 8 cut(s) | 615, 1587, 1716, 2621, 4685, 6199, 6753, 6857 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2381 |
| BstSFI | CTRYAG | 9 cut(s) | 662, 1104, 2549, 3070, 3108, 3603, 5061, 5922, 6326 |
| BstSLI | GKGCMC | 1 cut(s) | 1308 |
| BstUI | CGCG | 2 cut(s) | 4492, 6945 |
| BstV2I | GAAGAC | 4 cut(s) | 2223, 4611, 5760, 6918 |
| BstX2I | RGATCY | 5 cut(s) | 2328, 2571, 2746, 3847, 5812 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 62, 2709, 4716 |
| BstYI | RGATCY | 5 cut(s) | 2328, 2571, 2746, 3847, 5812 |
| Bsu15I | ATCGAT | 1 cut(s) | 4880 |
| BsuI | GTATCC | 1 cut(s) | 2590 |
| BsuTUI | ATCGAT | 1 cut(s) | 4880 |
| BtgI | CCRYGG | 3 cut(s) | 6599, 6882, 7133 |
| BtgZI | GCGATG | 1 cut(s) | 5392 |
| BtsI | GCAGTG | 3 cut(s) | 552, 1470, 5480 |
| BtuMI | TCGCGA | 1 cut(s) | 6945 |
| BveI | ACCTGC | 3 cut(s) | 2556, 4267, 5450 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2996, 3116, 4582, 6334 |
| CciI | TCATGA | 3 cut(s) | 978, 4227, 4744 |
| CfoI | GCGC | 4 cut(s) | 3135, 5246, 5636, 6780 |
| Cfr10I | RCCGGY | 1 cut(s) | 1209 |
| ClaI | ATCGAT | 1 cut(s) | 4880 |
| CseI | GACGC | 1 cut(s) | 3075 |
| CsiI | ACCWGGT | 1 cut(s) | 6751 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 4677, 4712, 7011, 7046 |
| DraI | TTTAAA | 2 cut(s) | 3877, 4155 |
| DraIII | CACNNNGTG | 1 cut(s) | 4773 |
| DriI | GACNNNNNGTC | 2 cut(s) | 3153, 6490 |
| EaeI | YGGCCR | 3 cut(s) | 231, 3424, 4764 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 3153, 6490 |
| EciI | GGCGGA | 1 cut(s) | 3231 |
| Ecl136II | GAGCTC | 3 cut(s) | 6245, 6559, 7211 |
| Eco130I | CCWWGG | 7 cut(s) | 2232, 5076, 5449, 6302, 6599, 6882, 7133 |
| Eco147I | AGGCCT | 2 cut(s) | 4035, 5477 |
| Eco24I | GRGCYC | 3 cut(s) | 6247, 6561, 7213 |
| Eco31I | GGTCTC | 2 cut(s) | 2431, 6100 |
| Eco32I | GATATC | 1 cut(s) | 3289 |
| Eco47I | GGWCC | 7 cut(s) | 608, 1730, 1784, 2173, 3658, 6031, 6638 |
| Eco53kI | GAGCTC | 3 cut(s) | 6245, 6559, 7211 |
| Eco57I | CTGAAG | 7 cut(s) | 1281, 2378, 2438, 3138, 4037, 4562, 6317 |
| Eco72I | CACGTG | 1 cut(s) | 1288 |
| Eco88I | CYCGRG | 3 cut(s) | 4725, 6530, 7253 |
| EcoICRI | GAGCTC | 3 cut(s) | 6245, 6559, 7211 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 5453 |
| EcoO109I | RGGNCCY | 3 cut(s) | 608, 4369, 6031 |
| EcoRI | GAATTC | 4 cut(s) | 2057, 2815, 6214, 6391 |
| EcoRII | CCWGG | 8 cut(s) | 613, 1585, 1714, 2619, 4683, 6197, 6751, 6855 |
| EcoRV | GATATC | 1 cut(s) | 3289 |
| EcoT14I | CCWWGG | 7 cut(s) | 2232, 5076, 5449, 6302, 6599, 6882, 7133 |
| EcoT22I | ATGCAT | 2 cut(s) | 3613, 4695 |
| EcoT38I | GRGCYC | 3 cut(s) | 6247, 6561, 7213 |
| ErhI | CCWWGG | 7 cut(s) | 2232, 5076, 5449, 6302, 6599, 6882, 7133 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 6903, 6935 |
| FaqI | GGGAC | 5 cut(s) | 230, 2591, 2997, 5339, 6017 |
| FauI | CCCGC | 2 cut(s) | 5035, 5316 |
| FauNDI | CATATG | 1 cut(s) | 61 |
| FbaI | TGATCA | 2 cut(s) | 3811, 6522 |
| FblI | GTMKAC | 3 cut(s) | 1100, 1179, 7299 |
| FriOI | GRGCYC | 3 cut(s) | 6247, 6561, 7213 |
| FspI | TGCGCA | 1 cut(s) | 5245 |
| GlaI | GCGC | 4 cut(s) | 3134, 5245, 5635, 6779 |
| GsaI | CCCAGC | 3 cut(s) | 58, 5416, 7106 |
| GsuI | CTGGAG | 5 cut(s) | 735, 2933, 4173, 6745, 7227 |
| HaeII | RGCGCY | 1 cut(s) | 6781 |
| HapII | CCGG | 8 cut(s) | 147, 1210, 2737, 3631, 3661, 4824, 5942, 7453 |
| HgaI | GACGC | 1 cut(s) | 3075 |
| HhaI | GCGC | 4 cut(s) | 3135, 5246, 5636, 6780 |
| Hin6I | GCGC | 4 cut(s) | 3133, 5244, 5634, 6778 |
| HinP1I | GCGC | 4 cut(s) | 3133, 5244, 5634, 6778 |
| HincII | GTYRAC | 5 cut(s) | 1397, 1566, 4059, 7300, 7364 |
| HindII | GTYRAC | 5 cut(s) | 1397, 1566, 4059, 7300, 7364 |
| HpaII | CCGG | 8 cut(s) | 147, 1210, 2737, 3631, 3661, 4824, 5942, 7453 |
| Hpy99I | CGWCG | 3 cut(s) | 2196, 3786, 4311 |
| HpyCH4IV | ACGT | 8 cut(s) | 925, 1287, 2509, 2556, 3549, 3642, 5616, 6877 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 26, 551, 1670, 3608, 4660, 4931, 5408 |
| HpySE526I | ACGT | 8 cut(s) | 925, 1287, 2509, 2556, 3549, 3642, 5616, 6877 |
| HspAI | GCGC | 4 cut(s) | 3133, 5244, 5634, 6778 |
| KflI | GGGWCCC | 1 cut(s) | 6031 |
| Ksp22I | TGATCA | 2 cut(s) | 3811, 6522 |
| LguI | GCTCTTC | 1 cut(s) | 2482 |
| MabI | ACCWGGT | 1 cut(s) | 6751 |
| MaeII | ACGT | 8 cut(s) | 925, 1287, 2509, 2556, 3549, 3642, 5616, 6877 |
| MbiI | CCGCTC | 1 cut(s) | 5021 |
| MflI | RGATCY | 5 cut(s) | 2328, 2571, 2746, 3847, 5812 |
| MlsI | TGGCCA | 2 cut(s) | 3426, 4766 |
| MluNI | TGGCCA | 2 cut(s) | 3426, 4766 |
| MmeI | TCCRAC | 7 cut(s) | 719, 878, 1772, 2061, 2414, 6762, 7379 |
| Mox20I | TGGCCA | 2 cut(s) | 3426, 4766 |
| Mph1103I | ATGCAT | 2 cut(s) | 3613, 4695 |
| MroXI | GAANNNNTTC | 8 cut(s) | 458, 789, 2140, 2363, 4050, 6192, 6608, 6915 |
| MscI | TGGCCA | 2 cut(s) | 3426, 4766 |
| MslI | CAYNNNNRTG | 4 cut(s) | 576, 1139, 1290, 4755 |
| Msp20I | TGGCCA | 2 cut(s) | 3426, 4766 |
| MspA1I | CMGCKG | 1 cut(s) | 2430 |
| MspCI | CTTAAG | 1 cut(s) | 3595 |
| MspI | CCGG | 8 cut(s) | 147, 1210, 2737, 3631, 3661, 4824, 5942, 7453 |
| MssI | GTTTAAAC | 1 cut(s) | 3877 |
| Mva1269I | GAATGC | 3 cut(s) | 571, 1031, 5824 |
| MvaI | CCWGG | 8 cut(s) | 615, 1587, 1716, 2621, 4685, 6199, 6753, 6857 |
| MvnI | CGCG | 2 cut(s) | 4492, 6945 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 26, 551, 1670, 3608, 4660, 4931, 5408 |
| NciI | CCSGG | 5 cut(s) | 147, 2737, 3632, 3662, 5943 |
| NcoI | CCATGG | 3 cut(s) | 6599, 6882, 7133 |
| NdeI | CATATG | 1 cut(s) | 61 |
| NmuCI | GTSAC | 7 cut(s) | 2712, 2783, 3145, 4790, 5511, 6886, 7109 |
| NruI | TCGCGA | 1 cut(s) | 6945 |
| NsbI | TGCGCA | 1 cut(s) | 5245 |
| NsiI | ATGCAT | 2 cut(s) | 3613, 4695 |
| NspV | TTCGAA | 1 cut(s) | 288 |
| PaeI | GCATGC | 3 cut(s) | 1601, 4340, 5171 |
| PagI | TCATGA | 3 cut(s) | 978, 4227, 4744 |
| PaqCI | CACCTGC | 1 cut(s) | 4267 |
| PceI | AGGCCT | 2 cut(s) | 4035, 5477 |
| PciI | ACATGT | 4 cut(s) | 396, 3184, 3882, 7358 |
| PciSI | GCTCTTC | 1 cut(s) | 2482 |
| PctI | GAATGC | 3 cut(s) | 571, 1031, 5824 |
| PdmI | GAANNNNTTC | 8 cut(s) | 458, 789, 2140, 2363, 4050, 6192, 6608, 6915 |
| Pfl23II | CGTACG | 1 cut(s) | 2029 |
| PflFI | GACNNNGTC | 2 cut(s) | 1788, 2171 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 893, 2433, 6907 |
| PfoI | TCCNGGA | 2 cut(s) | 1714, 2735 |
| PmaCI | CACGTG | 1 cut(s) | 1288 |
| PmeI | GTTTAAAC | 1 cut(s) | 3877 |
| PmlI | CACGTG | 1 cut(s) | 1288 |
| Ppu21I | YACGTR | 1 cut(s) | 1288 |
| PpuMI | RGGWCCY | 2 cut(s) | 608, 6031 |
| PscI | ACATGT | 4 cut(s) | 396, 3184, 3882, 7358 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2381 |
| PshBI | ATTAAT | 3 cut(s) | 2658, 5151, 5279 |
| PsiI | TTATAA | 3 cut(s) | 1745, 2018, 3467 |
| Psp124BI | GAGCTC | 3 cut(s) | 6247, 6561, 7213 |
| Psp1406I | AACGTT | 1 cut(s) | 5616 |
| Psp5II | RGGWCCY | 2 cut(s) | 608, 6031 |
| Psp6I | CCWGG | 8 cut(s) | 613, 1585, 1714, 2619, 4683, 6197, 6751, 6855 |
| PspCI | CACGTG | 1 cut(s) | 1288 |
| PspFI | CCCAGC | 3 cut(s) | 54, 5412, 7102 |
| PspGI | CCWGG | 8 cut(s) | 613, 1585, 1714, 2619, 4683, 6197, 6751, 6855 |
| PspLI | CGTACG | 1 cut(s) | 2029 |
| PspPPI | RGGWCCY | 2 cut(s) | 608, 6031 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2537, 2569, 4452, 4484 |
| PstI | CTGCAG | 4 cut(s) | 1108, 2553, 3112, 5065 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2996, 3116, 4582, 6334 |
| PsuI | RGATCY | 5 cut(s) | 2328, 2571, 2746, 3847, 5812 |
| PsyI | GACNNNGTC | 2 cut(s) | 1788, 2171 |
| RruI | TCGCGA | 1 cut(s) | 6945 |
| RseI | CAYNNNNRTG | 4 cut(s) | 576, 1139, 1290, 4755 |
| SacI | GAGCTC | 3 cut(s) | 6247, 6561, 7213 |
| SalI | GTCGAC | 1 cut(s) | 7298 |
| SapI | GCTCTTC | 1 cut(s) | 2482 |
| SexAI | ACCWGGT | 1 cut(s) | 6751 |
| SfcI | CTRYAG | 9 cut(s) | 662, 1104, 2549, 3070, 3108, 3603, 5061, 5922, 6326 |
| SfuI | TTCGAA | 1 cut(s) | 288 |
| SinI | GGWCC | 7 cut(s) | 608, 1730, 1784, 2173, 3658, 6031, 6638 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 576, 1139, 1290, 4755 |
| SphI | GCATGC | 3 cut(s) | 1601, 4340, 5171 |
| SseBI | AGGCCT | 2 cut(s) | 4035, 5477 |
| SspI | AATATT | 4 cut(s) | 415, 3310, 3895, 4905 |
| SstI | GAGCTC | 3 cut(s) | 6247, 6561, 7213 |
| StuI | AGGCCT | 2 cut(s) | 4035, 5477 |
| StyI | CCWWGG | 7 cut(s) | 2232, 5076, 5449, 6302, 6599, 6882, 7133 |
| TaiI | ACGT | 8 cut(s) | 928, 1290, 2512, 2559, 3552, 3645, 5619, 6880 |
| TatI | WGTACW | 5 cut(s) | 1148, 1842, 2642, 5195, 5959 |
| TauI | GCSGC | 2 cut(s) | 5024, 5402 |
| TseFI | GTSAC | 7 cut(s) | 2712, 2783, 3145, 4790, 5511, 6886, 7109 |
| Tsp45I | GTSAC | 7 cut(s) | 2712, 2783, 3145, 4790, 5511, 6886, 7109 |
| TspGWI | ACGGA | 2 cut(s) | 356, 4061 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1788, 2171 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 893, 2433, 6907 |
| Vha464I | CTTAAG | 1 cut(s) | 3595 |
| VpaK11BI | GGWCC | 7 cut(s) | 608, 1730, 1784, 2173, 3658, 6031, 6638 |
| VspI | ATTAAT | 3 cut(s) | 2658, 5151, 5279 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 5453 |
| XbaI | TCTAGA | 3 cut(s) | 2590, 2692, 5843 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 894 |
| XmiI | GTMKAC | 3 cut(s) | 1100, 1179, 7299 |
| XmnI | GAANNNNTTC | 8 cut(s) | 458, 789, 2140, 2363, 4050, 6192, 6608, 6915 |
| Zsp2I | ATGCAT | 2 cut(s) | 3613, 4695 |