Rh4AG428000

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000223
Physical Location & Seq
Forward (+)
72383172 .. 72386616
3445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG428000.1

Sequence Viewer

Length: 2631 bp
ATGATCATAAAGTTATTTGGGAGTAGTGCTACTAATTTTGTTGGGTTTGGAGCTGAGCAGGTCATCTTGGTGCGTGATGCTACCGTTCAGAAGGAGATTTCTAACTCTTTTGGGAAGCAAGCTCTTGTTCTTACTATTGTGGAGTGCAAGGGGCTCGAGTTCCAGGATGTACTTTTGTACAAGTATTTTGGGTCATCACCCTTAATAAATGAATGGAGGCTGATATATAATTACATGAAGGAACATGATTTGCTTAGTCCCACTTTACGTAAGTCGATTCCAACATTTGACAGGGCAAAACACAATTTTTTATGCTCTGAACTGAAGCAATTATATGTTGCTATTTCACGTACAAGAAATAGATTGTGGATTTATGAGGACATGGAAGGTCTCTGGAATCCCATGTTTGACTATTGGATAAAGAAATGTCTTGTACAAGTGAGGCAACTTGATGATTCCCTTGTAGAAAAAATGAAAGTTTCAAGCAGTGCAGAGGAATGGAAATCGCGTGGCATGAAGCTGTATCATGAGCGTAATTATGAAATGGCCAATATGTGCTTCCAAAATGCACATGATACTTACTGGGAAAGAAGGTCAAAAGCCGGCAGTCTCAAAGTTATGGCTTATTGTATGCAAACATCAAATCCTGAAAAGGCTAAATCCATTCTTAGGGAAGCTGCTGAAATTTTTGAAGATATAGGGATGGCAAATTCTGCTGCCCAATGCTTTTTTGATTCAGGGGATTATGATGTAGCAGGTAGGATTTATTACCACAAATGTGGTAAACAAGCACGTGAAAGAGCTGCGGAATGCTTCTTTCTAGCAGAGCGCTATGAATCTGCTGCAGAAATATTTCAATCCATAGGCATGGCAGAGTCTGCTGCAAGATGCTATTACGAATTGGGGCAGTATGAAAGGGCAGGGACTATTTATTTGGAAGACTGTGGTGACCCTGGACTGGAAAGAGCTGGGGAGTGTTTCTATCTAGCAGGATGCTATAAGGGTGCAGCTGATGCCTATGGTAGGGGAAATTTTTTATCCGATTGTCTTAGTGTGTGTTTAAAGGGAAAGCTGTTTGACATAGGTTTGAAATATATTAAAAGTTGGAAGCAACACGCAAGAAAAGAGCATGATCTGGCTATAAGAGGAGAACTGGAGTTTCTTGAGAGCTGTGCATTTCACTATTATGAGGTTGAAGATACAAGATCCAACATGAAATCTGTTAGAAGTGAAATGTTGTCCAGTCGAAAGATTTTAAATGCTCATCTCTCTTCTAGTCCAAAAATATATTTGTGGGATGACAAACTGATTCGTGATTTTCGTGATCTGAAAATCTATTTGAAAGTCAAACAATCTGAAAAGCAGTTTTCTGTAGATTCACTGGTGTACTTCTGGAATGTTTGGAAGGATATGGTAGTTTACTTGATTGAATATTTTGAATCTGTTGAAACCCAAGCTGTTAATAGAAAGAGAACTTACGGAGACTTCTTTCTGAATTACCTGGGAGTGTGGAGGCAGTTTCATGATGATCTGTGTTTTGTCTACTCTGTACTGATCTCTGATGCAAATTGGGTAAGAGGAATGGACAAAAGGTCTTTTCAAATTAACGGGGAGCTGGTCACCATAGGTGTTTGGCAGATAATTTCCGCCGCTCATAGCTATTGGACTTCAGAACTTCTTTCAGTTGGCATTAGGATTTTGAATAAGGTTGAAGCGCTTTACAGGGTCAAATCTGATTCAGTTTTCTGCCAAAGCTGGTGTCTTACGCAGATTTATGTTGTTGCGAAGTGTCTCTTGGAATCCAAATATCTGAAGCTAAGGAACGAAGATTCCTATACACTACAGAATTTTGTTGAACTGTCATCTGAAGATATTGTTGCTTGTATATTTCCTCCTGATTGGAGGAAATCTGTAAGAGAGAACATGATTACTCTTAGACAAAAGGATACTTCTAAAAGTTTGCTCAAACAAGTTATAGTTGATTTATTTACCAGCTCAAAGAAAAATCTTTCTTATGGCCAAGTTGGAAGGCTGGCAATGATTATTCTTGGGTCTGGTAATTTTGATGATGATGAACTATACAAGAAACTTATGAAAAATCTGAAATGTAGTCCACTGTGGAAGGTGTTCATTCAGAATCTGTGTGGGAGTATCATCGCAAAACAGAAAGGGTATGTACTTATCAATACCAGTCAAGAAAAGAAAGATGTGTCTCTTGTCCAGGGCCTTCATCAGGCTTTGGCAGAAACTTATTATGCAAACTGGAGGGAGGTTAATGACTATATTTCACCTGATGGTTTCTTTTATCTTATTGAATGCCTTTTGATGTGGGTATCTTGCTTTCAAGGTTTTGTTATCACCACCAAATCATGTTTCATTGAATGGTTGATGCAGAAGGAAGATACCAAACTCACTGCCAGTGTACTGGCTGATGTGCTAATATCTTTTGAACCCATCCTTATGTTTCTGATCGATGTGGTTCGGGAGGTTCTTTATGATAAGAAGACTATGGTTGAATGGATTCAAAGGTCTATCTCACAGTGGGAGGAGTGTCATTCGCTGCTGATCCTGAGATCGGTTGTTATCTTGTGTTTGCTTTATTTGAATTTTGGAATGGGGTATGAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

876

Amino Acids

101.8

Weight (kDa)

6.89

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 49, 746
AccBSI CCGCTC 1 cut(s) 1652
AccI GTMKAC 1 cut(s) 1542
AccII CGCG 1 cut(s) 508
AciI CCGC 3 cut(s) 806, 1647, 1650
AclWI GGATC 2 cut(s) 1200, 2560
AcoI YGGCCR 2 cut(s) 546, 2017
AcsI RAATTY 5 cut(s) 684, 709, 1030, 1846, 2605
AcuI CTGAAG 4 cut(s) 344, 1653, 1832, 1887
AcvI CACGTG 1 cut(s) 794
AfaI GTAC 8 cut(s) 171, 179, 352, 435, 1388, 1551, 2178, 2424
AfeI AGCGCT 2 cut(s) 830, 1716
AfiI CCNNNNNNNGG 5 cut(s) 669, 958, 1023, 2233, 2575
AhdI GACNNNNNGTC 1 cut(s) 1591
AjnI CCWGG 4 cut(s) 162, 952, 1500, 2220
AjuI GAANNNNNNNTTGG 6 cut(s) 542, 574, 1778, 1810, 2357, 2389
AleI CACNNNNGTG 1 cut(s) 777
AloI GAACNNNNNNTCC 2 cut(s) 1814, 1846
Alw26I GTCTC 5 cut(s) 395, 614, 1476, 1796, 2217
AlwI GGATC 2 cut(s) 1200, 2560
AlwNI CAGNNNCTG 2 cut(s) 878, 2140
Ama87I CYCGRG 1 cut(s) 155
Aor51HI AGCGCT 2 cut(s) 830, 1716
AoxI GGCC 3 cut(s) 546, 2017, 2224
ApeKI GCWGC 7 cut(s) 677, 716, 803, 842, 881, 1007, 2560
ApoI RAATTY 5 cut(s) 684, 709, 1030, 1846, 2605
ArsI GACNNNNNNTTYG 4 cut(s) 916, 948, 1744, 1776
Asp700I GAANNNNTTC 3 cut(s) 852, 2126, 2520
AspLEI GCGC 2 cut(s) 831, 1717
AspS9I GGNCC 1 cut(s) 2224
AsuHPI GGTGA 5 cut(s) 189, 959, 1612, 2280, 2350
AvaI CYCGRG 1 cut(s) 155
BalI TGGCCA 2 cut(s) 548, 2019
BanII GRGCYC 1 cut(s) 156
BbrPI CACGTG 1 cut(s) 794
BbsI GAAGAC 2 cut(s) 945, 2510
BbvI GCAGC 7 cut(s) 664, 703, 790, 829, 868, 1019, 2547
BccI CCATC 3 cut(s) 697, 2288, 2462
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 4 cut(s) 164, 954, 1502, 2222
BciVI GTATCC 1 cut(s) 1939
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 5 cut(s) 395, 614, 1476, 1796, 2217
BfaI CTAG 3 cut(s) 821, 986, 1275
BfmI CTRYAG 3 cut(s) 843, 1371, 1841
BfoI RGCGCY 2 cut(s) 832, 1718
BfuAI ACCTGC 2 cut(s) 49, 746
BfuI GTATCC 1 cut(s) 1939
BisI GCNGC 8 cut(s) 678, 717, 804, 843, 882, 1008, 1650, 2561
BlpI GCTNAGC 1 cut(s) 54
BlsI GCNGC 8 cut(s) 679, 718, 805, 844, 883, 1009, 1651, 2562
Bme1390I CCNGG 4 cut(s) 164, 954, 1502, 2222
BmeRI GACNNNNNGTC 1 cut(s) 1591
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 2224
BmrFI CCNGG 4 cut(s) 164, 954, 1502, 2222
BmrI ACTGGG 1 cut(s) 592
BmsI GCATC 6 cut(s) 67, 878, 983, 1003, 1552, 2379
BmuI ACTGGG 1 cut(s) 592
BpiI GAAGAC 2 cut(s) 945, 2510
BpmI CTGGAG 2 cut(s) 1175, 2284
Bpu10I CCTNAGC 1 cut(s) 1817
Bpu1102I GCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 1184
Bsa29I ATCGAT 1 cut(s) 2472
BsaAI YACGTR 3 cut(s) 269, 350, 794
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 3 cut(s) 952, 1501, 2221
Bsc4I CCNNNNNNNGG 5 cut(s) 669, 958, 1023, 2233, 2575
Bse118I RCCGGY 1 cut(s) 602
Bse1I ACTGG 9 cut(s) 587, 963, 1158, 1242, 1386, 2190, 2267, 2418, 2430
Bse3DI GCAATG 1 cut(s) 2043
BseBI CCWGG 4 cut(s) 164, 954, 1502, 2222
BseCI ATCGAT 1 cut(s) 2472
BseDI CCNNGG 3 cut(s) 952, 1501, 2221
BseGI GGATG 5 cut(s) 172, 708, 998, 1303, 2454
BseLI CCNNNNNNNGG 5 cut(s) 669, 958, 1023, 2233, 2575
BseMI GCAATG 1 cut(s) 2043
BseMII CTCAG 2 cut(s) 45, 2561
BseNI ACTGG 9 cut(s) 587, 963, 1158, 1242, 1386, 2190, 2267, 2418, 2430
BseRI GAGGAG 2 cut(s) 1161, 2561
BseXI GCAGC 7 cut(s) 664, 703, 790, 829, 868, 1019, 2547
BseYI CCCAGC 1 cut(s) 968
BsgI GTGCAG 2 cut(s) 510, 1026
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 3 cut(s) 548, 2019, 2226
BshVI ATCGAT 1 cut(s) 2472
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 603
BslFI GGGAC 2 cut(s) 243, 937
BslI CCNNNNNNNGG 5 cut(s) 669, 958, 1023, 2233, 2575
BsmAI GTCTC 5 cut(s) 395, 614, 1476, 1796, 2217
BsmFI GGGAC 2 cut(s) 243, 937
BsmI GAATGC 2 cut(s) 815, 2321
BsnI GGCC 3 cut(s) 548, 2019, 2226
Bso31I GGTCTC 1 cut(s) 395
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 156
Bsp1407I TGTACA 2 cut(s) 177, 433
Bsp143I GATC 9 cut(s) 3, 1132, 1205, 1324, 1528, 1554, 2469, 2565, 2573
Bsp1720I GCTNAGC 1 cut(s) 54
BspACI CCGC 3 cut(s) 806, 1647, 1650
BspANI GGCC 3 cut(s) 548, 2019, 2226
BspCNI CTCAG 2 cut(s) 46, 2562
BspDI ATCGAT 1 cut(s) 2472
BspFNI CGCG 1 cut(s) 508
BspHI TCATGA 2 cut(s) 526, 1522
BspMAI CTGCAG 1 cut(s) 847
BspMI ACCTGC 2 cut(s) 49, 746
BspPI GGATC 2 cut(s) 1200, 2560
BspTNI GGTCTC 1 cut(s) 395
BsrBI CCGCTC 1 cut(s) 1652
BsrDI GCAATG 1 cut(s) 2043
BsrFI RCCGGY 1 cut(s) 602
BsrGI TGTACA 2 cut(s) 177, 433
BsrI ACTGG 9 cut(s) 587, 963, 1158, 1242, 1386, 2190, 2267, 2418, 2430
BssAI RCCGGY 1 cut(s) 602
BssECI CCNNGG 3 cut(s) 952, 1501, 2221
BssMI GATC 9 cut(s) 3, 1132, 1205, 1324, 1528, 1554, 2469, 2565, 2573
Bst2UI CCWGG 4 cut(s) 164, 954, 1502, 2222
Bst4CI ACNGT 5 cut(s) 85, 944, 1860, 2118, 2541
Bst6I CTCTTC 1 cut(s) 1276
BstAPI GCANNNNNTGC 3 cut(s) 713, 878, 1013
BstAUI TGTACA 2 cut(s) 177, 433
BstBAI YACGTR 3 cut(s) 269, 350, 794
BstC8I GCNNGC 3 cut(s) 120, 604, 2034
BstDEI CTNAG 7 cut(s) 54, 254, 668, 1049, 1817, 1934, 2570
BstEII GGTNACC 2 cut(s) 947, 1618
BstENI CCTNNNNNAGG 2 cut(s) 1021, 2231
BstF5I GGATG 5 cut(s) 172, 708, 998, 1303, 2454
BstFNI CGCG 1 cut(s) 508
BstH2I RGCGCY 2 cut(s) 832, 1718
BstHHI GCGC 2 cut(s) 831, 1717
BstKTI GATC 9 cut(s) 6, 1135, 1208, 1327, 1531, 1557, 2472, 2568, 2576
BstMAI GTCTC 5 cut(s) 395, 614, 1476, 1796, 2217
BstMBI GATC 9 cut(s) 3, 1132, 1205, 1324, 1528, 1554, 2469, 2565, 2573
BstMWI GCNNNNNNNGC 3 cut(s) 713, 878, 1013
BstNI CCWGG 4 cut(s) 164, 954, 1502, 2222
BstPI GGTNACC 2 cut(s) 947, 1618
BstSCI CCNGG 4 cut(s) 162, 952, 1500, 2220
BstSFI CTRYAG 3 cut(s) 843, 1371, 1841
BstSNI TACGTA 1 cut(s) 269
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 7 cut(s) 664, 703, 790, 829, 868, 1019, 2547
BstV2I GAAGAC 2 cut(s) 945, 2510
BstX2I RGATCY 1 cut(s) 1205
BstXI CCANNNNNNTGG 3 cut(s) 779, 868, 2425
BstYI RGATCY 1 cut(s) 1205
Bsu15I ATCGAT 1 cut(s) 2472
BsuI GTATCC 1 cut(s) 1939
BsuRI GGCC 3 cut(s) 548, 2019, 2226
BsuTUI ATCGAT 1 cut(s) 2472
BtgZI GCGATG 1 cut(s) 2140
BtsCI GGATG 5 cut(s) 172, 708, 998, 1303, 2454
BtsI GCAGTG 2 cut(s) 493, 2412
BtsIMutI CAGTG 6 cut(s) 493, 1379, 2114, 2412, 2425, 2546
BveI ACCTGC 2 cut(s) 49, 746
Cac8I GCNNGC 3 cut(s) 120, 604, 2034
CaiI CAGNNNCTG 2 cut(s) 878, 2140
CciI TCATGA 2 cut(s) 526, 1522
CfoI GCGC 2 cut(s) 831, 1717
Cfr10I RCCGGY 1 cut(s) 602
Cfr13I GGNCC 1 cut(s) 2224
ClaI ATCGAT 1 cut(s) 2472
Csp6I GTAC 8 cut(s) 170, 178, 351, 434, 1387, 1550, 2177, 2423
CviQI GTAC 8 cut(s) 170, 178, 351, 434, 1387, 1550, 2177, 2423
DdeI CTNAG 7 cut(s) 54, 254, 668, 1049, 1817, 1934, 2570
DpnI GATC 9 cut(s) 5, 1134, 1207, 1326, 1530, 1556, 2471, 2567, 2575
DpnII GATC 9 cut(s) 3, 1132, 1205, 1324, 1528, 1554, 2469, 2565, 2573
DraI TTTAAA 2 cut(s) 1062, 1257
DriI GACNNNNNGTC 1 cut(s) 1591
EaeI YGGCCR 2 cut(s) 546, 2017
Eam1104I CTCTTC 1 cut(s) 1276
Eam1105I GACNNNNNGTC 1 cut(s) 1591
EarI CTCTTC 1 cut(s) 1276
EciI GGCGGA 1 cut(s) 1636
Eco105I TACGTA 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 395
Eco47III AGCGCT 2 cut(s) 830, 1716
Eco57I CTGAAG 4 cut(s) 344, 1653, 1832, 1887
Eco72I CACGTG 1 cut(s) 794
Eco88I CYCGRG 1 cut(s) 155
Eco91I GGTNACC 2 cut(s) 947, 1618
EcoNI CCTNNNNNAGG 2 cut(s) 1021, 2231
EcoO109I RGGNCCY 1 cut(s) 2224
EcoO65I GGTNACC 2 cut(s) 947, 1618
EcoRII CCWGG 4 cut(s) 162, 952, 1500, 2220
EcoT38I GRGCYC 1 cut(s) 156
FalI AAGNNNNNCTT 2 cut(s) 1778, 1810
FaqI GGGAC 2 cut(s) 243, 937
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 1542
Fnu4HI GCNGC 8 cut(s) 678, 717, 804, 843, 882, 1008, 1650, 2561
FokI GGATG 5 cut(s) 179, 715, 1005, 1310, 2441
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 8 cut(s) 678, 717, 804, 843, 882, 1008, 1650, 2561
FspBI CTAG 3 cut(s) 821, 986, 1275
GlaI GCGC 2 cut(s) 830, 1716
GluI GCNGC 8 cut(s) 678, 717, 804, 843, 882, 1008, 1650, 2561
GsaI CCCAGC 1 cut(s) 972
GsuI CTGGAG 2 cut(s) 1175, 2284
HaeII RGCGCY 2 cut(s) 832, 1718
HaeIII GGCC 3 cut(s) 548, 2019, 2226
HapII CCGG 1 cut(s) 603
HhaI GCGC 2 cut(s) 831, 1717
Hin6I GCGC 2 cut(s) 829, 1715
HinP1I GCGC 2 cut(s) 829, 1715
HpaII CCGG 1 cut(s) 603
HphI GGTGA 5 cut(s) 189, 959, 1612, 2280, 2350
Hpy166II GTNNAC 6 cut(s) 785, 1387, 1420, 1543, 2114, 2423
Hpy8I GTNNAC 6 cut(s) 785, 1387, 1420, 1543, 2114, 2423
HpyAV CCTTC 9 cut(s) 85, 232, 380, 585, 1399, 2022, 2116, 2237, 2389
HpyCH4III ACNGT 5 cut(s) 85, 944, 1860, 2118, 2541
HpyCH4IV ACGT 3 cut(s) 268, 349, 793
HpyF10VI GCNNNNNNNGC 3 cut(s) 713, 878, 1013
HpyF3I CTNAG 7 cut(s) 54, 254, 668, 1049, 1817, 1934, 2570
HpySE526I ACGT 3 cut(s) 268, 349, 793
HspAI GCGC 2 cut(s) 829, 1715
KroI GCCGGC 1 cut(s) 602
KroNI GCCGGC 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 9 cut(s) 3, 1132, 1205, 1324, 1528, 1554, 2469, 2565, 2573
LmnI GCTCC 2 cut(s) 50, 1612
Lsp1109I GCAGC 7 cut(s) 664, 703, 790, 829, 868, 1019, 2547
LweI GCATC 6 cut(s) 67, 878, 983, 1003, 1552, 2379
MaeI CTAG 3 cut(s) 821, 986, 1275
MaeII ACGT 3 cut(s) 268, 349, 793
MaeIII GTNAC 2 cut(s) 947, 1618
MalI GATC 9 cut(s) 5, 1134, 1207, 1326, 1530, 1556, 2471, 2567, 2575
MbiI CCGCTC 1 cut(s) 1652
MboI GATC 9 cut(s) 3, 1132, 1205, 1324, 1528, 1554, 2469, 2565, 2573
MboII GAAGA 8 cut(s) 704, 950, 1208, 1263, 1838, 1880, 2411, 2515
MflI RGATCY 1 cut(s) 1205
MhlI GDGCHC 1 cut(s) 156
MlsI TGGCCA 2 cut(s) 548, 2019
MluNI TGGCCA 2 cut(s) 548, 2019
MlyI GAGTC 1 cut(s) 884
MmeI TCCRAC 4 cut(s) 305, 1085, 1233, 2005
Mox20I TGGCCA 2 cut(s) 548, 2019
MroNI GCCGGC 1 cut(s) 602
MroXI GAANNNNTTC 3 cut(s) 852, 2126, 2520
MscI TGGCCA 2 cut(s) 548, 2019
MseI TTAA 7 cut(s) 203, 1061, 1098, 1256, 1461, 1605, 2274
MslI CAYNNNNRTG 5 cut(s) 68, 777, 866, 1185, 2459
Msp20I TGGCCA 2 cut(s) 548, 2019
MspA1I CMGCKG 1 cut(s) 1010
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 4 cut(s) 164, 954, 1502, 2222
Mva1269I GAATGC 2 cut(s) 815, 2321
MvaI CCWGG 4 cut(s) 164, 954, 1502, 2222
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 3 cut(s) 713, 878, 1013
NaeI GCCGGC 1 cut(s) 604
NdeII GATC 9 cut(s) 3, 1132, 1205, 1324, 1528, 1554, 2469, 2565, 2573
NgoMIV GCCGGC 1 cut(s) 602
NmuCI GTSAC 2 cut(s) 947, 1618
OliI CACNNNNGTG 1 cut(s) 777
PaeR7I CTCGAG 1 cut(s) 155
PagI TCATGA 2 cut(s) 526, 1522
PcsI WCGNNNNNNNCGW 1 cut(s) 1318
PctI GAATGC 2 cut(s) 815, 2321
PdiI GCCGGC 1 cut(s) 604
PdmI GAANNNNTTC 3 cut(s) 852, 2126, 2520
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 8 cut(s) 679, 718, 805, 844, 883, 1009, 1651, 2562
PleI GAGTC 1 cut(s) 883
PmaCI CACGTG 1 cut(s) 794
PmlI CACGTG 1 cut(s) 794
PpsI GAGTC 1 cut(s) 883
Ppu21I YACGTR 3 cut(s) 269, 350, 794
Psp6I CCWGG 4 cut(s) 162, 952, 1500, 2220
PspCI CACGTG 1 cut(s) 794
PspEI GGTNACC 2 cut(s) 947, 1618
PspFI CCCAGC 1 cut(s) 968
PspGI CCWGG 4 cut(s) 162, 952, 1500, 2220
PspPI GGNCC 1 cut(s) 2224
PspXI VCTCGAGB 1 cut(s) 155
PstI CTGCAG 1 cut(s) 847
PstNI CAGNNNCTG 2 cut(s) 878, 2140
PsuI RGATCY 1 cut(s) 1205
PvuII CAGCTG 1 cut(s) 1010
RsaI GTAC 8 cut(s) 171, 179, 352, 435, 1388, 1551, 2178, 2424
RsaNI GTAC 8 cut(s) 170, 178, 351, 434, 1387, 1550, 2177, 2423
RseI CAYNNNNRTG 5 cut(s) 68, 777, 866, 1185, 2459
SaqAI TTAA 7 cut(s) 203, 1061, 1098, 1256, 1461, 1605, 2274
SatI GCNGC 8 cut(s) 678, 717, 804, 843, 882, 1008, 1650, 2561
Sau3AI GATC 9 cut(s) 3, 1132, 1205, 1324, 1528, 1554, 2469, 2565, 2573
Sau96I GGNCC 1 cut(s) 2224
SchI GAGTC 1 cut(s) 884
ScrFI CCNGG 4 cut(s) 164, 954, 1502, 2222
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 6 cut(s) 67, 878, 983, 1003, 1552, 2379
SfcI CTRYAG 3 cut(s) 843, 1371, 1841
Sfr274I CTCGAG 1 cut(s) 155
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 5 cut(s) 68, 777, 866, 1185, 2459
SmlI CTYRAG 2 cut(s) 155, 1163
SmoI CTYRAG 2 cut(s) 155, 1163
SnaBI TACGTA 1 cut(s) 269
SsiI CCGC 3 cut(s) 806, 1647, 1650
SspI AATATT 2 cut(s) 852, 1433
SspMI CTAG 3 cut(s) 821, 986, 1275
StyD4I CCNGG 4 cut(s) 162, 952, 1500, 2220
TaaI ACNGT 5 cut(s) 85, 944, 1860, 2118, 2541
TaiI ACGT 3 cut(s) 271, 352, 796
TaqI TCGA 4 cut(s) 156, 275, 1246, 2472
TatI WGTACW 7 cut(s) 169, 177, 433, 1386, 1549, 2176, 2422
TauI GCSGC 1 cut(s) 1652
Tru1I TTAA 7 cut(s) 203, 1061, 1098, 1256, 1461, 1605, 2274
Tru9I TTAA 7 cut(s) 203, 1061, 1098, 1256, 1461, 1605, 2274
TscAI CASTG 6 cut(s) 493, 1386, 2121, 2419, 2425, 2546
TseFI GTSAC 2 cut(s) 947, 1618
TseI GCWGC 7 cut(s) 677, 716, 803, 842, 881, 1007, 2560
Tsp45I GTSAC 2 cut(s) 947, 1618
TspGWI ACGGA 1 cut(s) 1494
TspRI CASTG 6 cut(s) 493, 1386, 2121, 2419, 2425, 2546
XagI CCTNNNNNAGG 2 cut(s) 1021, 2231
XapI RAATTY 5 cut(s) 684, 709, 1030, 1846, 2605
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 1542
XmnI GAANNNNTTC 3 cut(s) 852, 2126, 2520
XspI CTAG 3 cut(s) 821, 986, 1275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.