Rh4CG454300

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000223
Physical Location & Seq
Forward (+)
68697176 .. 68703133
5958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG454300.1

Sequence Viewer

Length: 2943 bp
ATGGCCAATATGTGCTTCCAAAATGCACATGATACTTACTGGGAAAGAAGGTCAAAAGCCGGCAGTCTCAAAGTTATGGCTTATTGTATGCAAACATCAAATCCTGAAAAGGCTAAATCCATTCTTAGGGAAGCTGCTGAAATTTTTGAAGATATAGGGATGGCAAATTCTGCTGCCCAATGCTTTTTTGATTCAGGGGATTATGACGTAGCAGGTAGGATTTATTACCACAAATGTGGTAAACAAGCACGTGAAAGAGCTGCGGAATGCTTCTTTCTAGCAGAGCGCTATGAATCTGCTGCAGAAATATTTCAATCCATAGGCAAGGTAGAGTCTGCTGCAAGATGCTATTACGAATTGGGGCAGTATGAAAGGGCAGGGACTATTTATTTGGAAGACTGTGGTGAACCTGGATTGGAAAGAGCTGGGGAGTGTTTCTATCTAGCAGGATGCTATGAGCGTGCAGCTGACGCCTATGCTAGGGGAAATTTTTTATCCGATTGTCTTACTGTGTGTTTAAAGGGAAAGCTGTTTGACATAGGTTTGAAATATATTAAAAGTTGGAAGCAACACGCAAGAAAAGAGCATGATCTGGCTATAAGAGGAGAACTGGAGTTTCTTGAGAGCTGTGCATTTCACTATTATGAGGTTGAAGATACAAGATCCAAGATGAAATCTGTTAGAAGTGAAATGTTGTCCAGTCGAAAGATTTTAAATGCTCATCTCTCTTCAAGTCCAAAAATATATTTGTGGGATGACAAACTGATTTGTGATTTTCGTGATCTGAAAAATTATTTGAAAGTCAAACAATCTGAAAAGCAGTTTTCTGTAGATTCACTGGTGTACTTCTGGAATGTTTGGAAGGATATGGTAGTTCACTTGATTGAATATTTTGAATCTGTTAAAACCCATGCTGTTAATAGAAAGAGAACTTTCGGAGACTTCTTTCTGAATTACCTGGGAGTGTGGAGGCAGTTTCATGATGATCTGCGTTTTGTCTACACTGTACTTATCTCTGATGAAAATTGGGTAAGTGGAATGGACAAAAGGTCTTTTCAAATTAATGGGGAGCTGGTCACCATAGATGTTTGGCAGATAATTTCAGCCGCTCATAGCTATTGGACTTCAGAACTTCTTTCATTTGGCATTAGGATTTTGAATAAGCTTGAAGCGCTTTACAGGGTCAAATCTGATTCAGTTCTCTGCCAAAGCTGGTGTCTTACGCAGATTTATGTTGTTGCGAAGTGTCTCTTGGAATCCAAATATCTGAAGCTAAGGAACGAAGATTCCTATACACTACAGAATTTTGTTGAACTGTCAACTGAAGATATTGTTGCTTGTATATTTCCTCATGATTGGAGGAAATCTGTAAGAGAGAACATGATTACTCTTAGACAAAAGGGTACTTCTAAAAGTTTGCTCAAACAAGTTGTAGTTGATTTACTTACCAGCTCAAAGAAAAATCTTTCTTATGGCCAAGTTGGAAGGCTGGCAATGATTATTATTGGGTCTGGTAATTTTGATGATGATGAACTATACAAGAAACTTATGAAAAATCTGAAATGCAGTCCACCGTGGAAGGTGTTCATTCATAATCTGTGTGGGAGTATCATTGCAAAACAGAAAGGGTCTGCACTTATCAATACCAGTCAAGAAAAGAAAGATGTGTCTCTTGTCCAGGGCTTTCATCAGGCTTTGGCAGAAACTTATTATGCAAACTGGAGGGAGGTTAATGACTATATTTCACCTGATGGTTTCTTTTATCTTATTGAATGCCTTTTGATGTGGGTATCTTGCTTTCAAGGTTTTGTTATCACCACCAAATCATGTTTCATTGAATGGTTGATGCAGAAGGAAGTTACCAAACTCACTTCCAGTATACTGGCTGATGTGCTAATATCTTTTGAACCCATCCTTATGTTTCTGATCGCTGTGGTTCGGGAGGTTCTTTATGATAAGAAGACCATGGTTGAATGGATTCAAAGGTCTATCTCACAGTGGGAGGAGTGTCATTCGCTGCTGATCCTGAGATCGGTTGTTATCTTGTGTTTGCTTTATTTGAATTTTGGAATGGGGTATGATATACTCCTAGATCTACTGTGTAGGGAAGATATCACTGAACGACTCCCAAAGGATTTTTGCAATGCCTTGAGGAGAATGCATAAATGTTCTCTTAATGTAAATGTGAATGCTCTCGCTAAAGCTTTTAAGAAGATTGGTCATGATTTGTTGGTTGCAAGTTTTGGGGTTGATTGTTCAAGGTTCTTTTGTCCAGATTCCATTTATGTAGAGATGAAGGCCAACCTATGCAGTAATGAGATACTTAGAATATTGTTTCAAAGACCACATATTCTTGTTCAATATTCCCAAGGTCAAACAATTATCGGGGAAGCTTGCAGTCCTGTTCCTTCTGCTTATGATTCGGAGGAGACCAAGGTTATTGAGAGTCCTAAGCTTCTTCTACCCAACTCTGGTGTGGTGGAAGATGAGGTCCAACACACTGGAAACAGTAACAAAAGTGACCTTCCAATGGGTTTTGATGCTTTGTGGGACAAATTTGAAAGTTTTAAGTTGGTGGAGAAGGATGGTCAGAGGAGTTTACTTTCAGATGCCTCAGCATTTAAGTTGTTTGTGGGGAAAATTATTTTCCTTTTGACTGCTGTCTGGTTGGCAAGCTTTCCAAATGCTGTTGACAGAGAAGAACAAATAGTATCTCGAGAAGTGCTGAGCATGCTTGATGAGTTGATGCAACTTTATGCGGCCTTACATGGCAGTGAAAAGGAACTTGGGAACAAAATGTCTACCGTTGCAAAACTTTCTGCAAAGTTGCAAGTGAGGAGGCAAAGAATGGAGCCTATGTTTTTTAGGCCAGAGAAAAGGGAGGCCTATCTACAAGATCATCTACAGGATGCGGCTGCTACTGGAACACAAACCGGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

980

Amino Acids

112.59

Weight (kDa)

6.51

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 1109
AccI GTMKAC 3 cut(s) 999, 1879, 2801
AciI CCGC 4 cut(s) 263, 1107, 2759, 2912
AclWI GGATC 2 cut(s) 657, 2017
AcoI YGGCCR 2 cut(s) 3, 1474
AcsI RAATTY 6 cut(s) 141, 166, 487, 1303, 2062, 2555
AcuI CTGAAG 3 cut(s) 1110, 1289, 1344
AcvI CACGTG 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 471
AfaI GTAC 3 cut(s) 845, 1008, 1405
AfeI AGCGCT 2 cut(s) 287, 1173
AfiI CCNNNNNNNGG 5 cut(s) 126, 480, 2032, 2471, 2530
AhdI GACNNNNNGTC 1 cut(s) 1048
AjnI CCWGG 3 cut(s) 409, 957, 1677
AjuI GAANNNNNNNTTGG 7 cut(s) 31, 1235, 1267, 1814, 1846, 2769, 2801
AleI CACNNNNGTG 1 cut(s) 234
AloI GAACNNNNNNTCC 2 cut(s) 1271, 1303
Alw26I GTCTC 5 cut(s) 71, 933, 1253, 1674, 2423
AlwI GGATC 2 cut(s) 657, 2017
Ama87I CYCGRG 1 cut(s) 2715
Aor51HI AGCGCT 2 cut(s) 287, 1173
AoxI GGCC 6 cut(s) 3, 1474, 2298, 2760, 2867, 2883
ApeKI GCWGC 9 cut(s) 134, 173, 260, 299, 338, 464, 2017, 2915, 2937
ApoI RAATTY 6 cut(s) 141, 166, 487, 1303, 2062, 2555
ArsI GACNNNNNNTTYG 4 cut(s) 373, 405, 1201, 1233
AseI ATTAAT 1 cut(s) 1062
Asp700I GAANNNNTTC 3 cut(s) 309, 1583, 1977
AspLEI GCGC 2 cut(s) 288, 1174
AspS9I GGNCC 1 cut(s) 2491
AsuHPI GGTGA 4 cut(s) 416, 1069, 1737, 1807
AvaI CYCGRG 1 cut(s) 2715
AvaII GGWCC 1 cut(s) 2491
BalI TGGCCA 2 cut(s) 5, 1476
BbrPI CACGTG 1 cut(s) 251
BbsI GAAGAC 2 cut(s) 402, 1967
BbvCI CCTCAGC 1 cut(s) 2614
BbvI GCAGC 8 cut(s) 121, 160, 247, 286, 325, 476, 2004, 2902
BccI CCATC 4 cut(s) 154, 1745, 1919, 2579
BciT130I CCWGG 3 cut(s) 411, 959, 1679
BcoDI GTCTC 5 cut(s) 71, 933, 1253, 1674, 2423
BfaI CTAG 5 cut(s) 278, 443, 480, 2090, 2941
BfmI CTRYAG 4 cut(s) 300, 828, 1298, 2903
BfoI RGCGCY 2 cut(s) 289, 1175
BfuAI ACCTGC 1 cut(s) 203
BglII AGATCT 1 cut(s) 2092
BlpI GCTNAGC 1 cut(s) 2726
Bme1390I CCNGG 3 cut(s) 411, 959, 1679
Bme18I GGWCC 1 cut(s) 2491
BmeRI GACNNNNNGTC 1 cut(s) 1048
BmeT110I CYCGRG 1 cut(s) 2715
BmgT120I GGNCC 1 cut(s) 2491
BmiI GGNNCC 1 cut(s) 2853
BmrFI CCNGG 3 cut(s) 411, 959, 1679
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 7 cut(s) 335, 440, 1836, 2530, 2599, 2736, 2899
BmuI ACTGGG 1 cut(s) 49
BoxI GACNNNNGTC 1 cut(s) 2660
BpiI GAAGAC 2 cut(s) 402, 1967
BpmI CTGGAG 2 cut(s) 632, 1741
Bpu10I CCTNAGC 3 cut(s) 1274, 2451, 2614
Bpu1102I GCTNAGC 1 cut(s) 2726
BpuEI CTTGAG 2 cut(s) 641, 2170
BsaAI YACGTR 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 2423
BsaJI CCNNGG 6 cut(s) 958, 1574, 1678, 1965, 2368, 2433
BsaXI ACNNNNNCTCC 2 cut(s) 2843, 2873
Bsc4I CCNNNNNNNGG 5 cut(s) 126, 480, 2032, 2471, 2530
Bse118I RCCGGY 2 cut(s) 59, 2933
Bse3DI GCAATG 3 cut(s) 1500, 1611, 2149
BseBI CCWGG 3 cut(s) 411, 959, 1679
BseDI CCNNGG 6 cut(s) 958, 1574, 1678, 1965, 2368, 2433
BseGI GGATG 6 cut(s) 165, 455, 760, 1911, 2590, 2914
BseLI CCNNNNNNNGG 5 cut(s) 126, 480, 2032, 2471, 2530
BseMI GCAATG 3 cut(s) 1500, 1611, 2149
BseMII CTCAG 3 cut(s) 2018, 2628, 2717
BseRI GAGGAG 6 cut(s) 618, 2018, 2167, 2441, 2608, 2851
BseXI GCAGC 8 cut(s) 121, 160, 247, 286, 325, 476, 2004, 2902
BseYI CCCAGC 1 cut(s) 425
BsgI GTGCAG 2 cut(s) 483, 1617
BshFI GGCC 6 cut(s) 5, 1476, 2300, 2762, 2869, 2885
BsiHKCI CYCGRG 1 cut(s) 2715
BsiSI CCGG 2 cut(s) 60, 2934
BslFI GGGAC 2 cut(s) 394, 2564
BslI CCNNNNNNNGG 5 cut(s) 126, 480, 2032, 2471, 2530
BsmAI GTCTC 5 cut(s) 71, 933, 1253, 1674, 2423
BsmFI GGGAC 2 cut(s) 394, 2564
BsmI GAATGC 4 cut(s) 272, 1778, 2163, 2194
BsnI GGCC 6 cut(s) 5, 1476, 2300, 2762, 2869, 2885
Bso31I GGTCTC 1 cut(s) 2423
BsoBI CYCGRG 1 cut(s) 2715
Bsp143I GATC 9 cut(s) 589, 662, 781, 985, 1926, 2022, 2030, 2092, 2896
Bsp1720I GCTNAGC 1 cut(s) 2726
Bsp19I CCATGG 1 cut(s) 1965
BspACI CCGC 4 cut(s) 263, 1107, 2759, 2912
BspANI GGCC 6 cut(s) 5, 1476, 2300, 2762, 2869, 2885
BspCNI CTCAG 3 cut(s) 2019, 2627, 2718
BspHI TCATGA 3 cut(s) 979, 1351, 2221
BspLI GGNNCC 1 cut(s) 2853
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 203
BspPI GGATC 2 cut(s) 657, 2017
BspTNI GGTCTC 1 cut(s) 2423
BsrBI CCGCTC 1 cut(s) 1109
BsrDI GCAATG 3 cut(s) 1500, 1611, 2149
BsrFI RCCGGY 2 cut(s) 59, 2933
BssAI RCCGGY 2 cut(s) 59, 2933
BssECI CCNNGG 6 cut(s) 958, 1574, 1678, 1965, 2368, 2433
BssMI GATC 9 cut(s) 589, 662, 781, 985, 1926, 2022, 2030, 2092, 2896
BssNAI GTATAC 1 cut(s) 1880
BssNI GRCGYC 1 cut(s) 471
BssT1I CCWWGG 3 cut(s) 1965, 2368, 2433
Bst1107I GTATAC 1 cut(s) 1880
Bst2UI CCWGG 3 cut(s) 411, 959, 1679
Bst4CI ACNGT 9 cut(s) 401, 511, 1006, 1317, 1575, 1998, 2100, 2510, 2806
Bst6I CTCTTC 1 cut(s) 733
BstACI GRCGYC 1 cut(s) 471
BstAPI GCANNNNNTGC 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 6 cut(s) 61, 462, 1491, 2395, 2674, 2732
BstDEI CTNAG 8 cut(s) 125, 1274, 1391, 2027, 2324, 2451, 2614, 2726
BstDSI CCRYGG 2 cut(s) 1574, 1965
BstEII GGTNACC 1 cut(s) 1075
BstENI CCTNNNNNAGG 1 cut(s) 478
BstF5I GGATG 6 cut(s) 165, 455, 760, 1911, 2590, 2914
BstH2I RGCGCY 2 cut(s) 289, 1175
BstHHI GCGC 2 cut(s) 288, 1174
BstKTI GATC 9 cut(s) 592, 665, 784, 988, 1929, 2025, 2033, 2095, 2899
BstMAI GTCTC 5 cut(s) 71, 933, 1253, 1674, 2423
BstMBI GATC 9 cut(s) 589, 662, 781, 985, 1926, 2022, 2030, 2092, 2896
BstMWI GCNNNNNNNGC 4 cut(s) 170, 470, 1171, 2731
BstNI CCWGG 3 cut(s) 411, 959, 1679
BstNSI RCATGY 1 cut(s) 2734
BstPAI GACNNNNGTC 1 cut(s) 2660
BstPI GGTNACC 1 cut(s) 1075
BstSCI CCNGG 3 cut(s) 409, 957, 1677
BstSFI CTRYAG 4 cut(s) 300, 828, 1298, 2903
BstV1I GCAGC 8 cut(s) 121, 160, 247, 286, 325, 476, 2004, 2902
BstV2I GAAGAC 2 cut(s) 402, 1967
BstX2I RGATCY 2 cut(s) 662, 2092
BstXI CCANNNNNNTGG 3 cut(s) 236, 1882, 2501
BstYI RGATCY 2 cut(s) 662, 2092
BstZ17I GTATAC 1 cut(s) 1880
BsuRI GGCC 6 cut(s) 5, 1476, 2300, 2762, 2869, 2885
BtgI CCRYGG 2 cut(s) 1574, 1965
BtsCI GGATG 6 cut(s) 165, 455, 760, 1911, 2590, 2914
BtsI GCAGTG 1 cut(s) 2779
BtsIMutI CAGTG 6 cut(s) 836, 1002, 2003, 2115, 2499, 2779
BveI ACCTGC 1 cut(s) 203
Cac8I GCNNGC 6 cut(s) 61, 462, 1491, 2395, 2674, 2732
CciI TCATGA 3 cut(s) 979, 1351, 2221
CfoI GCGC 2 cut(s) 288, 1174
Cfr10I RCCGGY 2 cut(s) 59, 2933
Cfr13I GGNCC 1 cut(s) 2491
CseI GACGC 1 cut(s) 479
Csp6I GTAC 3 cut(s) 844, 1007, 1404
CviQI GTAC 3 cut(s) 844, 1007, 1404
DdeI CTNAG 8 cut(s) 125, 1274, 1391, 2027, 2324, 2451, 2614, 2726
DpnI GATC 9 cut(s) 591, 664, 783, 987, 1928, 2024, 2032, 2094, 2898
DpnII GATC 9 cut(s) 589, 662, 781, 985, 1926, 2022, 2030, 2092, 2896
DraI TTTAAA 2 cut(s) 519, 714
DriI GACNNNNNGTC 1 cut(s) 1048
EaeI YGGCCR 2 cut(s) 3, 1474
Eam1104I CTCTTC 1 cut(s) 733
Eam1105I GACNNNNNGTC 1 cut(s) 1048
EarI CTCTTC 1 cut(s) 733
Eco130I CCWWGG 3 cut(s) 1965, 2368, 2433
Eco147I AGGCCT 1 cut(s) 2885
Eco31I GGTCTC 1 cut(s) 2423
Eco32I GATATC 1 cut(s) 2113
Eco47I GGWCC 1 cut(s) 2491
Eco47III AGCGCT 2 cut(s) 287, 1173
Eco57I CTGAAG 3 cut(s) 1110, 1289, 1344
Eco72I CACGTG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 2715
Eco91I GGTNACC 1 cut(s) 1075
EcoNI CCTNNNNNAGG 1 cut(s) 478
EcoO65I GGTNACC 1 cut(s) 1075
EcoRII CCWGG 3 cut(s) 409, 957, 1677
EcoRV GATATC 1 cut(s) 2113
EcoT14I CCWWGG 3 cut(s) 1965, 2368, 2433
EcoT22I ATGCAT 1 cut(s) 2163
ErhI CCWWGG 3 cut(s) 1965, 2368, 2433
FalI AAGNNNNNCTT 2 cut(s) 1235, 1267
FaqI GGGAC 2 cut(s) 394, 2564
FblI GTMKAC 3 cut(s) 999, 1879, 2801
FokI GGATG 6 cut(s) 172, 462, 767, 1898, 2597, 2921
FspBI CTAG 5 cut(s) 278, 443, 480, 2090, 2941
GlaI GCGC 2 cut(s) 287, 1173
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 2 cut(s) 632, 1741
HaeII RGCGCY 2 cut(s) 289, 1175
HaeIII GGCC 6 cut(s) 5, 1476, 2300, 2762, 2869, 2885
HapII CCGG 2 cut(s) 60, 2934
HgaI GACGC 1 cut(s) 479
HhaI GCGC 2 cut(s) 288, 1174
Hin1I GRCGYC 1 cut(s) 471
Hin6I GCGC 2 cut(s) 286, 1172
HinP1I GCGC 2 cut(s) 286, 1172
HincII GTYRAC 2 cut(s) 1320, 2692
HindII GTYRAC 2 cut(s) 1320, 2692
HindIII AAGCTT 5 cut(s) 1163, 2202, 2391, 2453, 2674
HpaII CCGG 2 cut(s) 60, 2934
HphI GGTGA 4 cut(s) 416, 1069, 1737, 1807
HpyAV CCTTC 9 cut(s) 42, 856, 1479, 1573, 1846, 2290, 2418, 2534, 2575
HpyCH4III ACNGT 9 cut(s) 401, 511, 1006, 1317, 1575, 1998, 2100, 2510, 2806
HpyCH4IV ACGT 2 cut(s) 207, 250
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 470, 1171, 2731
HpyF3I CTNAG 8 cut(s) 125, 1274, 1391, 2027, 2324, 2451, 2614, 2726
HpySE526I ACGT 2 cut(s) 207, 250
Hsp92I GRCGYC 1 cut(s) 471
HspAI GCGC 2 cut(s) 286, 1172
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 9 cut(s) 589, 662, 781, 985, 1926, 2022, 2030, 2092, 2896
LmnI GCTCC 2 cut(s) 1069, 2851
Lsp1109I GCAGC 8 cut(s) 121, 160, 247, 286, 325, 476, 2004, 2902
LweI GCATC 7 cut(s) 335, 440, 1836, 2530, 2599, 2736, 2899
MaeI CTAG 5 cut(s) 278, 443, 480, 2090, 2941
MaeII ACGT 2 cut(s) 207, 250
MaeIII GTNAC 4 cut(s) 1075, 1858, 2510, 2519
MalI GATC 9 cut(s) 591, 664, 783, 987, 1928, 2024, 2032, 2094, 2898
MbiI CCGCTC 1 cut(s) 1109
MboI GATC 9 cut(s) 589, 662, 781, 985, 1926, 2022, 2030, 2092, 2896
MflI RGATCY 2 cut(s) 662, 2092
MlsI TGGCCA 2 cut(s) 5, 1476
MluNI TGGCCA 2 cut(s) 5, 1476
MlyI GAGTC 3 cut(s) 341, 2118, 2455
MmeI TCCRAC 3 cut(s) 542, 1462, 2518
Mox20I TGGCCA 2 cut(s) 5, 1476
Mph1103I ATGCAT 1 cut(s) 2163
MroNI GCCGGC 1 cut(s) 59
MroXI GAANNNNTTC 3 cut(s) 309, 1583, 1977
MscI TGGCCA 2 cut(s) 5, 1476
MslI CAYNNNNRTG 4 cut(s) 234, 642, 1916, 2772
Msp20I TGGCCA 2 cut(s) 5, 1476
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 2 cut(s) 60, 2934
MspR9I CCNGG 3 cut(s) 411, 959, 1679
Mva1269I GAATGC 4 cut(s) 272, 1778, 2163, 2194
MvaI CCWGG 3 cut(s) 411, 959, 1679
MwoI GCNNNNNNNGC 4 cut(s) 170, 470, 1171, 2731
NaeI GCCGGC 1 cut(s) 61
NcoI CCATGG 1 cut(s) 1965
NdeII GATC 9 cut(s) 589, 662, 781, 985, 1926, 2022, 2030, 2092, 2896
NgoMIV GCCGGC 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 2853
NmuCI GTSAC 2 cut(s) 1075, 2519
NsiI ATGCAT 1 cut(s) 2163
NspI RCATGY 1 cut(s) 2734
OliI CACNNNNGTG 1 cut(s) 234
PaeI GCATGC 1 cut(s) 2734
PaeR7I CTCGAG 1 cut(s) 2715
PagI TCATGA 3 cut(s) 979, 1351, 2221
PceI AGGCCT 1 cut(s) 2885
PctI GAATGC 4 cut(s) 272, 1778, 2163, 2194
PdiI GCCGGC 1 cut(s) 61
PdmI GAANNNNTTC 3 cut(s) 309, 1583, 1977
PleI GAGTC 3 cut(s) 340, 2118, 2454
PmaCI CACGTG 1 cut(s) 251
PmlI CACGTG 1 cut(s) 251
PpsI GAGTC 3 cut(s) 340, 2118, 2454
Ppu21I YACGTR 1 cut(s) 251
PshAI GACNNNNGTC 1 cut(s) 2660
PshBI ATTAAT 1 cut(s) 1062
Psp6I CCWGG 3 cut(s) 409, 957, 1677
PspCI CACGTG 1 cut(s) 251
PspEI GGTNACC 1 cut(s) 1075
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 3 cut(s) 409, 957, 1677
PspN4I GGNNCC 1 cut(s) 2853
PspPI GGNCC 1 cut(s) 2491
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 2 cut(s) 662, 2092
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 3 cut(s) 845, 1008, 1405
RsaNI GTAC 3 cut(s) 844, 1007, 1404
RseI CAYNNNNRTG 4 cut(s) 234, 642, 1916, 2772
Sau3AI GATC 9 cut(s) 589, 662, 781, 985, 1926, 2022, 2030, 2092, 2896
Sau96I GGNCC 1 cut(s) 2491
SchI GAGTC 3 cut(s) 341, 2118, 2455
ScrFI CCNGG 3 cut(s) 411, 959, 1679
SfaNI GCATC 7 cut(s) 335, 440, 1836, 2530, 2599, 2736, 2899
SfcI CTRYAG 4 cut(s) 300, 828, 1298, 2903
Sfr274I CTCGAG 1 cut(s) 2715
SinI GGWCC 1 cut(s) 2491
SlaI CTCGAG 1 cut(s) 2715
SmiMI CAYNNNNRTG 4 cut(s) 234, 642, 1916, 2772
SmlI CTYRAG 3 cut(s) 620, 2149, 2715
SmoI CTYRAG 3 cut(s) 620, 2149, 2715
SphI GCATGC 1 cut(s) 2734
SseBI AGGCCT 1 cut(s) 2885
SsiI CCGC 4 cut(s) 263, 1107, 2759, 2912
SspI AATATT 4 cut(s) 309, 890, 2331, 2363
SspMI CTAG 5 cut(s) 278, 443, 480, 2090, 2941
StuI AGGCCT 1 cut(s) 2885
StyD4I CCNGG 3 cut(s) 409, 957, 1677
StyI CCWWGG 3 cut(s) 1965, 2368, 2433
TaaI ACNGT 9 cut(s) 401, 511, 1006, 1317, 1575, 1998, 2100, 2510, 2806
TaiI ACGT 2 cut(s) 210, 253
TaqI TCGA 2 cut(s) 703, 2716
TatI WGTACW 2 cut(s) 843, 1006
TauI GCSGC 3 cut(s) 1109, 2762, 2915
TscAI CASTG 6 cut(s) 843, 1009, 2003, 2122, 2506, 2779
TseFI GTSAC 2 cut(s) 1075, 2519
TseI GCWGC 9 cut(s) 134, 173, 260, 299, 338, 464, 2017, 2915, 2937
Tsp45I GTSAC 2 cut(s) 1075, 2519
TspRI CASTG 6 cut(s) 843, 1009, 2003, 2122, 2506, 2779
VpaK11BI GGWCC 1 cut(s) 2491
VspI ATTAAT 1 cut(s) 1062
XagI CCTNNNNNAGG 1 cut(s) 478
XapI RAATTY 6 cut(s) 141, 166, 487, 1303, 2062, 2555
XceI RCATGY 1 cut(s) 2734
XcmI CCANNNNNNNNNTGG 1 cut(s) 2473
XhoI CTCGAG 1 cut(s) 2715
XmiI GTMKAC 3 cut(s) 999, 1879, 2801
XmnI GAANNNNTTC 3 cut(s) 309, 1583, 1977
XspI CTAG 5 cut(s) 278, 443, 480, 2090, 2941
Zsp2I ATGCAT 1 cut(s) 2163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.