Rh4CG454500

TPR and ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
68719961 .. 68722300
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG454500.1

Sequence Viewer

Length: 1899 bp
ATGGATAGGTTGGCTGTTTTGAAAAATCAAATCAATTCTTCTGAGAGACATAAGAGTATTAGAGGGGAAGTGTTATCAGCTAGAAAAATTTTGGATGCCCATCTTTCTCGAAGAACTGATAAGTATATATGGGAAACAGAATTGATTGGTGATCTTGTACAGCATTCAGAAGAGAAAATATCTAAAAATCAAGTTTCCATCGATTCACTCATCTACTTCTGGAATTCTTGGAAGGAGAAGATTCTTCACATAATTGAATCTGTAGGTTGTTTGGAAACACAAGACTACAAAGGTTATGTAGAGTTTGGTTTTACTTTCTTAGGAGTCTGGAGGCTGTATCGTAATCTGAGTCCAGTGTATGTTTTACTCATCTCTGATGCTGATTGGGTTAGAGGTCTGGACAAAAGACATTTCCAAAGTTATGAGAAGTTGGTCTCCATTGATGTTCACCAACTCATTCCAGCTGCTCAAAATTTTTGGTGTTCAGAACTGGTCTCTGTTGGCATTAAGGTTTTGGAAAAGCTTGAAGCACTTTTCAAGTTCCCAGTCAAGAGTCCTGATTCAATTTTCTTTCAAAGCAGGGCTCTTACTCTGATCTATGATGTTGGAAAATATCTTTTGGATTCCAAGTGTCTGAAGCAAAGGAATCAAGATACCATGACACTACAGAAGTTTGTAACCTTTTCGACTGAAAAATATATTACTTGCATATTTCCTTTAGATTGGAGGAATTCAGCAAGAGAGAATATGATTTCTCTTAGAAGAACTAATGCTTCCCAATCTATGCTGAAACAAGTAATAGTTGAATGTATCAGCGGGAAGAACAAGATGTCTTATGGGCAAATTGGAAAGGTCATCATGATCATTCTTGGGTCTGGCAAGCCAAGTAGTGAACTTCACAGCATGATTGTGCAAAAGCTGACCTGCAACCCGCCATGGATGTCATTCGTTGAGACTTTGTGTGAGAAGGATATGGGACCTTGGAGTCGTAGTGGAGAACCTAAACAGACGTCCGTTTTGTGGCGATTCTATGAAGCATTAGCCGAAACTTATAGTGCAAACTGGCGGGCTCTTCATGACTACATATCACCTGGTTGCTTCTTGTATCTTGTAGAGCGCCTTTTAACTTTGGCCTCTTGCTTTCATGGTTTTGTTATCTCCACGAGTTCAAGTTTTATAGAATGGCTGATATACAAGGATGGAGATACCATCATAAGCTCACCATCCCTGGGAGAGATTGCTGATTTTGTGACTGATGTTGTTCGAGATTGTATTTATAAAAGGGGGAATATGACTGATTGGATTAGAAAAACTGATGCAGATGGGAAGAGTTCTTATCCACTACTCATGTTGAGATTGGTTATTCTACTATGCTTGCTTCTTGTGAACTTTGGGAAGTCTTTAGATATGCTCTTTGATATTCTGGGGAAGAACTATGTCATTGGAGTACTGCCCAAGGAATTTGTTGAGGCCCTTAAGAAGGGGAGGAAAGACAGATCTGCTAGTGCCTGTGTGCTAGCTATAGCTACTGCTCTTAAGAAGATTGGTAATCCTTTAGTAATTGCAAGTTTCGGGTTCAATTGTTCAAGGTTCTTATGCACAGATGCCATTTATGTTGACATGGTATTAAACCCGAGCAAGGAGGACGTACTTGGGAAATTCTTCCCTAAACCACCTGTTGTCCCAGCTTCACAAAGCCGAATGAGACCTGTTGAAGGGGAAGGTAATAATCGTTATACTGTTCTGTCGGATGCTGAAGACACTCACAGTGAAGATGAGGAGATTTGCACTTCCAATGAGTCGAAGCCGAAGTGCCCAGAACCTGATGCTGCTTCTGCAACCCATGGGAAGAAAAAGGGCAATCCCAAGAAACACAAGGGGAAAAAGGGCCGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

632

Amino Acids

71.8

Weight (kDa)

8.87

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1278
AasI GACNNNNNNGTC 1 cut(s) 984
AatII GACGTC 1 cut(s) 1013
Acc36I ACCTGC 1 cut(s) 932
AciI CCGC 4 cut(s) 816, 932, 1066, 1891
AcsI RAATTY 6 cut(s) 87, 223, 472, 730, 1460, 1658
AcuI CTGAAG 2 cut(s) 656, 1776
AcyI GRCGYC 1 cut(s) 1010
AfaI GTAC 3 cut(s) 159, 1449, 1650
AfiI CCNNNNNNNGG 5 cut(s) 1020, 1229, 1480, 1639, 1715
AflII CTTAAG 2 cut(s) 1475, 1535
AjnI CCWGG 2 cut(s) 1090, 1227
AluBI AGCT 8 cut(s) 80, 464, 523, 919, 1218, 1520, 1526, 1688
AluI AGCT 8 cut(s) 80, 464, 523, 919, 1218, 1520, 1526, 1688
Alw26I GTCTC 5 cut(s) 40, 439, 499, 947, 1699
AlwNI CAGNNNCTG 1 cut(s) 1823
Ama87I CYCGRG 1 cut(s) 1633
AoxI GGCC 3 cut(s) 1131, 1470, 1888
ApeKI GCWGC 2 cut(s) 464, 1829
ApoI RAATTY 6 cut(s) 87, 223, 472, 730, 1460, 1658
ArsI GACNNNNNNTTYG 2 cut(s) 1000, 1032
Asp700I GAANNNNTTC 1 cut(s) 1661
AspLEI GCGC 1 cut(s) 1119
AspS9I GGNCC 3 cut(s) 977, 1471, 1888
AsuHPI GGTGA 4 cut(s) 161, 440, 1080, 1212
AsuNHI GCTAGC 1 cut(s) 1516
AvaI CYCGRG 1 cut(s) 1633
AvaII GGWCC 1 cut(s) 977
BaeGI GKGCMC 1 cut(s) 1817
BanII GRGCYC 2 cut(s) 586, 1072
BauI CACGAG 1 cut(s) 1162
BbsI GAAGAC 1 cut(s) 1764
BbvI GCAGC 2 cut(s) 451, 1816
BccI CCATC 6 cut(s) 108, 206, 1193, 1217, 1231, 1316
BciT130I CCWGG 2 cut(s) 1092, 1229
BclI TGATCA 1 cut(s) 861
BcoDI GTCTC 5 cut(s) 40, 439, 499, 947, 1699
BfaI CTAG 3 cut(s) 81, 1503, 1517
BfmI CTRYAG 3 cut(s) 261, 665, 1521
BfoI RGCGCY 1 cut(s) 1120
BfrI CTTAAG 2 cut(s) 1475, 1535
BfuAI ACCTGC 1 cut(s) 932
BglII AGATCT 1 cut(s) 1496
BisI GCNGC 3 cut(s) 465, 1830, 1891
BlsI GCNGC 3 cut(s) 466, 1831, 1892
BmcAI AGTACT 1 cut(s) 1449
Bme1390I CCNGG 2 cut(s) 1092, 1229
Bme18I GGWCC 1 cut(s) 977
BmeT110I CYCGRG 1 cut(s) 1633
BmgT120I GGNCC 3 cut(s) 977, 1471, 1888
BmiI GGNNCC 1 cut(s) 978
BmrFI CCNGG 2 cut(s) 1092, 1229
BmrI ACTGGG 1 cut(s) 539
BmsI GCATC 6 cut(s) 85, 367, 1306, 1594, 1741, 1816
BmtI GCTAGC 1 cut(s) 1520
BmuI ACTGGG 1 cut(s) 539
BpiI GAAGAC 1 cut(s) 1764
BpmI CTGGAG 1 cut(s) 349
Bsa29I ATCGAT 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 1010
BsaI GGTCTC 3 cut(s) 439, 499, 1699
BsaJI CCNNGG 6 cut(s) 935, 980, 1227, 1228, 1455, 1843
BsaXI ACNNNNNCTCC 2 cut(s) 976, 1006
Bsc4I CCNNNNNNNGG 5 cut(s) 1020, 1229, 1480, 1639, 1715
Bse1I ACTGG 4 cut(s) 353, 495, 545, 1067
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 2 cut(s) 1092, 1229
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 6 cut(s) 935, 980, 1227, 1228, 1455, 1843
BseGI GGATG 5 cut(s) 100, 945, 1204, 1223, 1756
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 5 cut(s) 1020, 1229, 1480, 1639, 1715
BseMII CTCAG 2 cut(s) 33, 338
BseNI ACTGG 4 cut(s) 353, 495, 545, 1067
BseRI GAGGAG 1 cut(s) 1793
BseSI GKGCMC 1 cut(s) 1817
BseXI GCAGC 2 cut(s) 451, 1816
BseYI CCCAGC 1 cut(s) 1684
BshFI GGCC 3 cut(s) 1133, 1472, 1890
BshVI ATCGAT 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 1633
BslFI GGGAC 2 cut(s) 990, 1667
BslI CCNNNNNNNGG 5 cut(s) 1020, 1229, 1480, 1639, 1715
BsmAI GTCTC 5 cut(s) 40, 439, 499, 947, 1699
BsmFI GGGAC 2 cut(s) 990, 1667
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 3 cut(s) 1133, 1472, 1890
Bso31I GGTCTC 3 cut(s) 439, 499, 1699
BsoBI CYCGRG 1 cut(s) 1633
Bsp1286I GDGCHC 3 cut(s) 586, 1072, 1817
Bsp1407I TGTACA 1 cut(s) 157
Bsp143I GATC 4 cut(s) 151, 594, 861, 1496
Bsp19I CCATGG 2 cut(s) 935, 1843
BspACI CCGC 4 cut(s) 816, 932, 1066, 1891
BspANI GGCC 3 cut(s) 1133, 1472, 1890
BspCNI CTCAG 2 cut(s) 34, 339
BspDI ATCGAT 1 cut(s) 201
BspHI TCATGA 2 cut(s) 858, 1075
BspLI GGNNCC 1 cut(s) 978
BspMI ACCTGC 1 cut(s) 932
BspOI GCTAGC 1 cut(s) 1520
BspQI GCTCTTC 1 cut(s) 1077
BspTI CTTAAG 2 cut(s) 1475, 1535
BspTNI GGTCTC 3 cut(s) 439, 499, 1699
BsrGI TGTACA 1 cut(s) 157
BsrI ACTGG 4 cut(s) 353, 495, 545, 1067
BssECI CCNNGG 6 cut(s) 935, 980, 1227, 1228, 1455, 1843
BssMI GATC 4 cut(s) 151, 594, 861, 1496
BssNI GRCGYC 1 cut(s) 1010
BssSI CACGAG 1 cut(s) 1162
BssT1I CCWWGG 4 cut(s) 935, 980, 1455, 1843
Bst2BI CACGAG 1 cut(s) 1162
Bst2UI CCWGG 2 cut(s) 1092, 1229
Bst4CI ACNGT 2 cut(s) 1741, 1769
Bst6I CTCTTC 3 cut(s) 165, 1077, 1322
BstACI GRCGYC 1 cut(s) 1010
BstAFI CTTAAG 2 cut(s) 1475, 1535
BstAUI TGTACA 1 cut(s) 157
BstC8I GCNNGC 4 cut(s) 881, 1068, 1376, 1518
BstDEI CTNAG 4 cut(s) 42, 319, 347, 758
BstDSI CCRYGG 2 cut(s) 935, 1843
BstENI CCTNNNNNAGG 2 cut(s) 1478, 1713
BstF5I GGATG 5 cut(s) 100, 945, 1204, 1223, 1756
BstH2I RGCGCY 1 cut(s) 1120
BstHHI GCGC 1 cut(s) 1119
BstKTI GATC 4 cut(s) 154, 597, 864, 1499
BstMAI GTCTC 5 cut(s) 40, 439, 499, 947, 1699
BstMBI GATC 4 cut(s) 151, 594, 861, 1496
BstMWI GCNNNNNNNGC 1 cut(s) 1835
BstNI CCWGG 2 cut(s) 1092, 1229
BstSCI CCNGG 2 cut(s) 1090, 1227
BstSFI CTRYAG 3 cut(s) 261, 665, 1521
BstSLI GKGCMC 1 cut(s) 1817
BstV1I GCAGC 2 cut(s) 451, 1816
BstV2I GAAGAC 1 cut(s) 1764
BstX2I RGATCY 1 cut(s) 1496
BstYI RGATCY 1 cut(s) 1496
Bsu15I ATCGAT 1 cut(s) 201
BsuRI GGCC 3 cut(s) 1133, 1472, 1890
BsuTUI ATCGAT 1 cut(s) 201
BtgI CCRYGG 2 cut(s) 935, 1843
BtsCI GGATG 5 cut(s) 100, 945, 1204, 1223, 1756
BtsIMutI CAGTG 2 cut(s) 360, 1774
BveI ACCTGC 1 cut(s) 932
Cac8I GCNNGC 4 cut(s) 881, 1068, 1376, 1518
CaiI CAGNNNCTG 1 cut(s) 1823
CciI TCATGA 2 cut(s) 858, 1075
CfoI GCGC 1 cut(s) 1119
Cfr13I GGNCC 3 cut(s) 977, 1471, 1888
ClaI ATCGAT 1 cut(s) 201
CsiI ACCWGGT 1 cut(s) 1090
Csp6I GTAC 3 cut(s) 158, 1448, 1649
CviAII CATG 9 cut(s) 658, 859, 904, 936, 1076, 1145, 1348, 1621, 1844
CviQI GTAC 3 cut(s) 158, 1448, 1649
DdeI CTNAG 4 cut(s) 42, 319, 347, 758
DpnI GATC 4 cut(s) 153, 596, 863, 1498
DpnII GATC 4 cut(s) 151, 594, 861, 1496
DrdI GACNNNNNNGTC 1 cut(s) 984
DseDI GACNNNNNNGTC 1 cut(s) 984
Eam1104I CTCTTC 3 cut(s) 165, 1077, 1322
EarI CTCTTC 3 cut(s) 165, 1077, 1322
Eco130I CCWWGG 4 cut(s) 935, 980, 1455, 1843
Eco24I GRGCYC 2 cut(s) 586, 1072
Eco31I GGTCTC 3 cut(s) 439, 499, 1699
Eco47I GGWCC 1 cut(s) 977
Eco57I CTGAAG 2 cut(s) 656, 1776
Eco88I CYCGRG 1 cut(s) 1633
EcoNI CCTNNNNNAGG 2 cut(s) 1478, 1713
EcoO109I RGGNCCY 2 cut(s) 977, 1471
EcoRI GAATTC 2 cut(s) 223, 730
EcoRII CCWGG 2 cut(s) 1090, 1227
EcoT14I CCWWGG 4 cut(s) 935, 980, 1455, 1843
EcoT38I GRGCYC 2 cut(s) 586, 1072
ErhI CCWWGG 4 cut(s) 935, 980, 1455, 1843
FaeI CATG 9 cut(s) 661, 862, 907, 939, 1079, 1148, 1351, 1624, 1847
FaqI GGGAC 2 cut(s) 990, 1667
FatI CATG 9 cut(s) 657, 858, 903, 935, 1075, 1144, 1347, 1620, 1843
FauI CCCGC 3 cut(s) 809, 939, 1059
FbaI TGATCA 1 cut(s) 861
Fnu4HI GCNGC 3 cut(s) 465, 1830, 1891
FokI GGATG 5 cut(s) 107, 952, 1210, 1211, 1763
FriOI GRGCYC 2 cut(s) 586, 1072
Fsp4HI GCNGC 3 cut(s) 465, 1830, 1891
FspBI CTAG 3 cut(s) 81, 1503, 1517
GlaI GCGC 1 cut(s) 1118
GluI GCNGC 3 cut(s) 465, 1830, 1891
GsaI CCCAGC 1 cut(s) 1688
GsuI CTGGAG 1 cut(s) 349
HaeII RGCGCY 1 cut(s) 1120
HaeIII GGCC 3 cut(s) 1133, 1472, 1890
HhaI GCGC 1 cut(s) 1119
Hin1I GRCGYC 1 cut(s) 1010
Hin1II CATG 9 cut(s) 661, 862, 907, 939, 1079, 1148, 1351, 1624, 1847
Hin6I GCGC 1 cut(s) 1117
HinP1I GCGC 1 cut(s) 1117
HincII GTYRAC 1 cut(s) 1618
HindII GTYRAC 1 cut(s) 1618
HindIII AAGCTT 1 cut(s) 521
HphI GGTGA 4 cut(s) 161, 440, 1080, 1212
Hpy166II GTNNAC 4 cut(s) 448, 893, 1387, 1618
Hpy188I TCNGA 8 cut(s) 43, 169, 348, 376, 487, 594, 636, 1750
Hpy8I GTNNAC 4 cut(s) 448, 893, 1387, 1618
HpyAV CCTTC 5 cut(s) 226, 961, 1474, 1709, 1715
HpyCH4III ACNGT 2 cut(s) 1741, 1769
HpyCH4IV ACGT 2 cut(s) 1010, 1647
HpyCH4V TGCA 9 cut(s) 708, 913, 927, 1058, 1319, 1565, 1599, 1788, 1838
HpyF10VI GCNNNNNNNGC 1 cut(s) 1835
HpyF3I CTNAG 4 cut(s) 42, 319, 347, 758
HpySE526I ACGT 2 cut(s) 1010, 1647
Hsp92I GRCGYC 1 cut(s) 1010
Hsp92II CATG 9 cut(s) 661, 862, 907, 939, 1079, 1148, 1351, 1624, 1847
HspAI GCGC 1 cut(s) 1117
Ksp22I TGATCA 1 cut(s) 861
Kzo9I GATC 4 cut(s) 151, 594, 861, 1496
LguI GCTCTTC 1 cut(s) 1077
Lsp1109I GCAGC 2 cut(s) 451, 1816
LweI GCATC 6 cut(s) 85, 367, 1306, 1594, 1741, 1816
MabI ACCWGGT 1 cut(s) 1090
MaeI CTAG 3 cut(s) 81, 1503, 1517
MaeII ACGT 2 cut(s) 1010, 1647
MaeIII GTNAC 2 cut(s) 676, 1249
MalI GATC 4 cut(s) 153, 596, 863, 1498
MboI GATC 4 cut(s) 151, 594, 861, 1496
MfeI CAATTG 1 cut(s) 1579
MflI RGATCY 1 cut(s) 1496
MhlI GDGCHC 3 cut(s) 586, 1072, 1817
MlyI GAGTC 5 cut(s) 333, 358, 562, 994, 1808
MmeI TCCRAC 2 cut(s) 586, 1728
MnlI CCTC 9 cut(s) 56, 324, 386, 720, 1144, 1462, 1479, 1636, 1771
MroXI GAANNNNTTC 1 cut(s) 1661
MseI TTAA 5 cut(s) 507, 1124, 1476, 1536, 1628
MslI CAYNNNNRTG 1 cut(s) 908
MspA1I CMGCKG 2 cut(s) 464, 816
MspCI CTTAAG 2 cut(s) 1475, 1535
MspR9I CCNGG 2 cut(s) 1092, 1229
MunI CAATTG 1 cut(s) 1579
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 2 cut(s) 1092, 1229
MwoI GCNNNNNNNGC 1 cut(s) 1835
NcoI CCATGG 2 cut(s) 935, 1843
NdeII GATC 4 cut(s) 151, 594, 861, 1496
NheI GCTAGC 1 cut(s) 1516
NlaIII CATG 9 cut(s) 661, 862, 907, 939, 1079, 1148, 1351, 1624, 1847
NlaIV GGNNCC 1 cut(s) 978
NmuCI GTSAC 1 cut(s) 1249
PagI TCATGA 2 cut(s) 858, 1075
PasI CCCWGGG 1 cut(s) 1228
PciSI GCTCTTC 1 cut(s) 1077
PctI GAATGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 1661
PfeI GAWTC 7 cut(s) 203, 241, 257, 560, 623, 646, 1026
PkrI GCNGC 3 cut(s) 466, 1831, 1892
PleI GAGTC 5 cut(s) 332, 357, 561, 993, 1807
PpsI GAGTC 5 cut(s) 332, 357, 561, 993, 1807
PpuMI RGGWCCY 1 cut(s) 977
PsiI TTATAA 1 cut(s) 1278
Psp5II RGGWCCY 1 cut(s) 977
Psp6I CCWGG 2 cut(s) 1090, 1227
PspFI CCCAGC 1 cut(s) 1684
PspGI CCWGG 2 cut(s) 1090, 1227
PspN4I GGNNCC 1 cut(s) 978
PspPI GGNCC 3 cut(s) 977, 1471, 1888
PspPPI RGGWCCY 1 cut(s) 977
PstNI CAGNNNCTG 1 cut(s) 1823
PsuI RGATCY 1 cut(s) 1496
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 3 cut(s) 159, 1449, 1650
RsaNI GTAC 3 cut(s) 158, 1448, 1649
RseI CAYNNNNRTG 1 cut(s) 908
SapI GCTCTTC 1 cut(s) 1077
SaqAI TTAA 5 cut(s) 507, 1124, 1476, 1536, 1628
SatI GCNGC 3 cut(s) 465, 1830, 1891
Sau3AI GATC 4 cut(s) 151, 594, 861, 1496
Sau96I GGNCC 3 cut(s) 977, 1471, 1888
ScaI AGTACT 1 cut(s) 1449
SchI GAGTC 5 cut(s) 333, 358, 562, 994, 1808
ScrFI CCNGG 2 cut(s) 1092, 1229
SduI GDGCHC 3 cut(s) 586, 1072, 1817
SexAI ACCWGGT 1 cut(s) 1090
SfaNI GCATC 6 cut(s) 85, 367, 1306, 1594, 1741, 1816
SfcI CTRYAG 3 cut(s) 261, 665, 1521
SinI GGWCC 1 cut(s) 977
SmiMI CAYNNNNRTG 1 cut(s) 908
SmlI CTYRAG 2 cut(s) 1475, 1535
SmoI CTYRAG 2 cut(s) 1475, 1535
SsiI CCGC 4 cut(s) 816, 932, 1066, 1891
SspMI CTAG 3 cut(s) 81, 1503, 1517
StyD4I CCNGG 2 cut(s) 1090, 1227
StyI CCWWGG 4 cut(s) 935, 980, 1455, 1843
TaaI ACNGT 2 cut(s) 1741, 1769
TaiI ACGT 2 cut(s) 1013, 1650
TaqI TCGA 5 cut(s) 109, 201, 686, 1264, 1802
TatI WGTACW 2 cut(s) 157, 1447
TauI GCSGC 1 cut(s) 1893
TfiI GAWTC 7 cut(s) 203, 241, 257, 560, 623, 646, 1026
Tru1I TTAA 5 cut(s) 507, 1124, 1476, 1536, 1628
Tru9I TTAA 5 cut(s) 507, 1124, 1476, 1536, 1628
TscAI CASTG 2 cut(s) 360, 1774
TseFI GTSAC 1 cut(s) 1249
TseI GCWGC 2 cut(s) 464, 1829
Tsp45I GTSAC 1 cut(s) 1249
TspDTI ATGAA 3 cut(s) 1047, 1064, 1133
TspGWI ACGGA 1 cut(s) 1003
TspRI CASTG 2 cut(s) 360, 1774
Vha464I CTTAAG 2 cut(s) 1475, 1535
VpaK11BI GGWCC 1 cut(s) 977
XagI CCTNNNNNAGG 2 cut(s) 1478, 1713
XapI RAATTY 6 cut(s) 87, 223, 472, 730, 1460, 1658
XmnI GAANNNNTTC 1 cut(s) 1661
XspI CTAG 3 cut(s) 81, 1503, 1517
ZraI GACGTC 1 cut(s) 1011
ZrmI AGTACT 1 cut(s) 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.