Rh4BG437800

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000223
Physical Location & Seq
Forward (+)
57858986 .. 57897229
38244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG437800.1

Sequence Viewer

Length: 3195 bp
ATGCGTTTTTTTAAAACCAAGAAAGAAGACCTTTTGAGGTCAATGGTCAAGAGGAGAGAGTTGAGAGTACGGACCAGCCAATTGACGCGAAGAACTTCGCCTCTAAGTAGAAAGCTCTGTGTTGAAGAAGGCAGAGAAGAAAAGCAAGAGTCTTTGGTGGAGATCATGGAGGTTTCAGGCAAGAAAAAGATCAAGCCTGACCCTTTTACTGATACTGTGTTTTCTTGGTCCCTGGAGAACATTTTCAATGAGGATCTTTACAAAGACAAGAAGCTGGTAACATTTTCGACTAGGGAGTATGTTGCTTACATCTTTCCTTTAGATTGGAGGAATTCGTTGAGACAGAATATGATTTCTCTTAGAAGAACTGATGCTTCAAAGAATGTGCTGAATCAAGTTATAGTTGAATATACCAGCTCGAAGAACGAGCTGTCTTATGGGCAGATTGGAAGGATCGCAATGATCATTCTCGGGTCAGGTAAGCTGCTGAATACTGAGCTCTCTCTTCAGCTTGTGAAAAAGCTTGAAATCAATACACCATGGAAGGCCTTCATTGAGAATCTCTGTGCGAGCGTGGGACCTGGACATACCCGTCAGGAACCAATAGAGGTGTCTGTCATGTGGCGGTTACATGAGGCTTTGGTTGAAACTTATAGTGTCAACTGGAGGAAGGTTTCCGACTACATATCACCTGGTTGCTTCTTGTATCTTGTGGAGCGCCATCTGTTTTCAGCAAGTTGCTTTCAAGGTTTTGTCATCACTACAAGTTCTTGCTTTATTGAGTGGCTGATATACCAGGATGAAGATACCAGCTTACGTTCCATAGTGACTGGTGGGCGTCCTTCTCTGGAAACGATTCTTCCATTTGTGATTACCGTGGTTCGCGAGTGTATTTTTAAGAAGAAGGATATGATTGAATGGATTGAGAAGTCTGACAGAAATTGGAGGAAGTACTATCAGTCACTCATGTTGCGGTTGGTTACTGTCTTGTGTTTGACTAATTTGAACTTTGGCTTGTGTTTGGATATAATCCATGATTTGCTGGGGAGGAACTTTATCACCGAACTCCTACCATGGGAGTTTTATGATGCACTTAGGAGGAGGAGGAAACACAATTCTCTCATTTTAAATGTGAATGTGCTTGCTGGAGCTCTCAAGAAGATTGATAATACTTTGGTGATTGCGAGTTTCGGGGCTAATTGTTCAAGGTTTTACTGTTCGGATGCCATCTTTGTCGACATGACGGCCAACCAATGCATGGATGACATATTGAGAAAATGGTTTCCAAAGCCGCCTGTCATTCAAGTTGCACAACATCAAGTTGCATCTGTTGAAGCTGAAGGTAGAAGTTCTTGCAGTCGTGCACTCTCTGCAACTGATTCTGAAGAAGAAGGCAGAGAAGAAAAGCAAGAGTCTTTGGTGGAGATCATGGAGGTTTCAGGCAAGAAAAAGATCAAGCCCGACCCTTTCACTGATACTGTGTTTTCTTGGTCCCTGGAGAACATTTTCAATGAGGATCTTTACAAAGACAAGCCAAGGCATCAAGATTACTTGACACTACAGAAGCTGGTAACATTTTCGACTGGGGAGTATGTTCCTTACATCTTTCCTTTAGATTGGAGGAATTCGTTGAGACAGAATATGATTTCTCTTAGAAGAACTGATGCTTCAAAGAATGTGCTGAATCAAGTTATAGTTGAATATACCAGCTCGAAGAAGGAGCTGTCTTATGGGCAGATTGGAAGGATCGCAATGATCATTCTCGGGTCAGGTATGCTGTTGAATACGGAGCTCTCTGTTCAGCTTGTGAAAAAGCTTGAATGCAATATACTATGGAAGGCCTTCATTGAGAATCTCTGTGCAAGCATTGGACCTGGACATACCCGTCAGGAACCAATAGAGGTGTCTGTCATGTTGCGGTTACATGAGGCTTTGGTTGAAACTTATAGTGTCAACTGGAGGAAGGTTTCCGACTACATATCACCTGGTTGCTTCTTGTATCTTGTGGAGCGCCTTCTGTTTTCAGCAAGTTGCTTTCAAGGTTTTGTCATCACTACAAGTTCTTGCTTTGTTGAATGGCTGATATACCAGGATGAAGATACCAGCTTACGTTCCATAGTGACTGGTGGGCTTCCTTCTCTGGGAACCATTCTTCCATTTGTGATTAGTGTGGTTCGCGATTGTATTTTTAAGAAGAAGGATATGATTGAATGGATTGAGAAGTCTGACAGAGATTGGAGGAAGTATTATCAGTCACTCATGTTGCGGTTGGTTACTGTCTTGTGTTTGATTAATTTGAACTTCCGCTTGTGTTTGGATATAATCCATCATTTGCTGGGGAGGAACTTTATCACTGAACTCCTACCATGGGAGTTTTATGATGCACTTAGGAGGAGGAGGAAACCCAATTCTCTCAGTTTAAATGTTAATGTGCTTGCTGGAGCTCTCAAGAAGATTGATAATACATTGGTGATTGCGAGTTTCGGGGCTGATTGTTCAAGGTTTTACTGTTCGGATGCCATCTTTGTCGACATGACGGCCAACCAATGCAAGGATGACATATTGAGAAAATGGTTTCCAAAGCCGCCTGTCATTCAAGTTGCACAACATCAAGTTGCATCTGTTGAAAAAGGTAGAAGTTCTTGCAGTCCTGCACTCTCTGCAACTGATTCTGAAGAAGGTAAGAATTCTAAACTTGCGCCTTCAGAATCCAGCTTGGTAAAAGAGACTGCTGTTGCAGCTGGTAAGCAGTGTGAAGCTGAAGACGGTCGCAGTAAAGATGAGGGTAATTGCATATCCAATGCATCAGATCAGCAGTGTCCAGGCCCAAACTCGGAGCAGCATGACGCCGAAGACAGCCACACAAAAGGCCGGAAGTCTTTGGGATCCTCCTTGACCAACTACTCAACGCATCCTCCACATTCTTCTGCAGGAACTGTATCTGCGCCATTATCAGCTTCACATCCCTTGCCTCCTTGGCCTTGTTCTCCTCCTCCGCCACCTGATCACGGCGTGGCCCTCGCCGGAGCGGTCCATCAGCAGAGCATTCTCGAACAAGGCCTCAAACGACAGTGGATTCGACTCGAGAATTTCCTCAAACTCCTGGCGTGCTCGCCGCTCTCGAGCTTCTGCTGCAGAAGCGACTTGAGGGCGTCGGAGTTGGAGCCGTGGAAATCGGACAACGGAGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

1064

Amino Acids

121.19

Weight (kDa)

8.24

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 591, 1884
AccB7I CCANNNNNTGG 1 cut(s) 1258
AccBSI CCGCTC 2 cut(s) 3029, 3118
AccI GTMKAC 2 cut(s) 1236, 2529
AccII CGCG 3 cut(s) 88, 885, 2178
AclWI GGATC 6 cut(s) 261, 461, 1524, 1754, 2880, 2893
AcoI YGGCCR 2 cut(s) 1245, 2538
AcsI RAATTY 4 cut(s) 331, 1624, 2686, 3088
AcuI CTGAAG 6 cut(s) 491, 1359, 1404, 2688, 2694, 2781
AcyI GRCGYC 3 cut(s) 838, 2847, 3152
AdeI CACNNNGTG 1 cut(s) 3013
AfaI GTAC 2 cut(s) 69, 953
AfiI CCNNNNNNNGG 7 cut(s) 1075, 1258, 2141, 2368, 2551, 2833, 3008
AloI GAACNNNNNNTCC 2 cut(s) 2137, 2169
Alw21I GWGCWC 6 cut(s) 501, 1153, 1366, 1794, 2446, 3113
Alw26I GTCTC 3 cut(s) 334, 1627, 2720
Alw44I GTGCAC 1 cut(s) 1362
AlwI GGATC 6 cut(s) 261, 461, 1524, 1754, 2880, 2893
AlwNI CAGNNNCTG 2 cut(s) 1567, 2936
Ama87I CYCGRG 4 cut(s) 470, 1763, 3083, 3121
AoxI GGCC 9 cut(s) 546, 1245, 1839, 2538, 2824, 2869, 2978, 3015, 3058
ApaLI GTGCAC 1 cut(s) 1362
ApeKI GCWGC 4 cut(s) 484, 2738, 2839, 3132
ApoI RAATTY 4 cut(s) 331, 1624, 2686, 3088
ArsI GACNNNNNNTTYG 2 cut(s) 3060, 3092
AseI ATTAAT 1 cut(s) 2292
Asp700I GAANNNNTTC 6 cut(s) 94, 242, 548, 855, 1505, 1841
AspLEI GCGC 4 cut(s) 720, 2013, 2701, 2947
AspS9I GGNCC 8 cut(s) 72, 228, 578, 1491, 1871, 2825, 3016, 3031
AsuHPI GGTGA 5 cut(s) 681, 1051, 1189, 1974, 2482
AvaI CYCGRG 4 cut(s) 470, 1763, 3083, 3121
AvaII GGWCC 6 cut(s) 72, 228, 578, 1491, 1871, 3031
BaeGI GKGCMC 1 cut(s) 1366
BamHI GGATCC 1 cut(s) 2885
BanII GRGCYC 4 cut(s) 501, 1153, 1794, 2446
BbsI GAAGAC 3 cut(s) 33, 2769, 2859
Bbv12I GWGCWC 6 cut(s) 501, 1153, 1366, 1794, 2446, 3113
BbvI GCAGC 4 cut(s) 471, 2750, 2851, 3119
BccI CCATC 5 cut(s) 729, 1235, 2334, 2528, 3042
BceAI ACGGC 4 cut(s) 1260, 2553, 3025, 3151
BclI TGATCA 3 cut(s) 462, 1755, 3004
BcoDI GTCTC 3 cut(s) 334, 1627, 2720
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 3 cut(s) 1559, 2928, 3133
BfoI RGCGCY 2 cut(s) 721, 2014
BglI GCCNNNNNGGC 1 cut(s) 2977
BisI GCNGC 7 cut(s) 485, 1292, 2585, 2739, 2840, 3116, 3133
BlsI GCNGC 7 cut(s) 486, 1293, 2586, 2740, 2841, 3117, 3134
BmcAI AGTACT 1 cut(s) 953
Bme18I GGWCC 6 cut(s) 72, 228, 578, 1491, 1871, 3031
BmeT110I CYCGRG 4 cut(s) 470, 1763, 3083, 3121
BmgT120I GGNCC 8 cut(s) 72, 228, 578, 1491, 1871, 2825, 3016, 3031
BmiI GGNNCC 8 cut(s) 230, 579, 600, 1493, 1893, 2146, 2887, 3165
BmrI ACTGGG 1 cut(s) 1593
BmuI ACTGGG 1 cut(s) 1593
BpiI GAAGAC 3 cut(s) 33, 2769, 2859
BpmI CTGGAG 6 cut(s) 254, 685, 1167, 1517, 1978, 2460
BpuEI CTTGAG 3 cut(s) 1139, 2432, 3166
BsaHI GRCGYC 3 cut(s) 838, 2847, 3152
BsaJI CCNNGG 9 cut(s) 231, 539, 876, 1073, 1494, 1535, 2366, 2975, 3167
BsaXI ACNNNNNCTCC 2 cut(s) 2899, 2929
Bsc4I CCNNNNNNNGG 7 cut(s) 1075, 1258, 2141, 2368, 2551, 2833, 3008
Bse1I ACTGG 5 cut(s) 668, 835, 1588, 1961, 2128
Bse3DI GCAATG 2 cut(s) 465, 1758
BseDI CCNNGG 9 cut(s) 231, 539, 876, 1073, 1494, 1535, 2366, 2975, 3167
BseGI GGATG 8 cut(s) 805, 1228, 1267, 2098, 2521, 2560, 2911, 2962
BseLI CCNNNNNNNGG 7 cut(s) 1075, 1258, 2141, 2368, 2551, 2833, 3008
BseMI GCAATG 2 cut(s) 465, 1758
BseMII CTCAG 2 cut(s) 486, 2428
BseNI ACTGG 5 cut(s) 668, 835, 1588, 1961, 2128
BseRI GAGGAG 7 cut(s) 67, 1114, 1117, 2407, 2410, 2979, 2982
BseSI GKGCMC 1 cut(s) 1366
BseXI GCAGC 4 cut(s) 471, 2750, 2851, 3119
BseYI CCCAGC 2 cut(s) 1042, 2335
BsgI GTGCAG 1 cut(s) 2637
Bsh1236I CGCG 3 cut(s) 88, 885, 2178
Bsh1285I CGRYCG 1 cut(s) 2770
BshFI GGCC 9 cut(s) 548, 1247, 1841, 2540, 2826, 2871, 2980, 3017, 3060
BsiEI CGRYCG 1 cut(s) 2770
BsiHKAI GWGCWC 6 cut(s) 501, 1153, 1366, 1794, 2446, 3113
BsiHKCI CYCGRG 4 cut(s) 470, 1763, 3083, 3121
BsiSI CCGG 2 cut(s) 2872, 3024
BslFI GGGAC 3 cut(s) 214, 591, 1477
BslI CCNNNNNNNGG 7 cut(s) 1075, 1258, 2141, 2368, 2551, 2833, 3008
BsmAI GTCTC 3 cut(s) 334, 1627, 2720
BsmFI GGGAC 3 cut(s) 214, 591, 1477
BsmI GAATGC 2 cut(s) 1826, 3045
BsnI GGCC 9 cut(s) 548, 1247, 1841, 2540, 2826, 2871, 2980, 3017, 3060
BsoBI CYCGRG 4 cut(s) 470, 1763, 3083, 3121
Bsp1286I GDGCHC 6 cut(s) 501, 1153, 1366, 1794, 2446, 3113
Bsp19I CCATGG 3 cut(s) 539, 1073, 2366
Bsp68I TCGCGA 2 cut(s) 885, 2178
BspANI GGCC 9 cut(s) 548, 1247, 1841, 2540, 2826, 2871, 2980, 3017, 3060
BspCNI CTCAG 2 cut(s) 487, 2427
BspFNI CGCG 3 cut(s) 88, 885, 2178
BspLI GGNNCC 8 cut(s) 230, 579, 600, 1493, 1893, 2146, 2887, 3165
BspMAI CTGCAG 2 cut(s) 2932, 3137
BspPI GGATC 6 cut(s) 261, 461, 1524, 1754, 2880, 2893
BsrBI CCGCTC 2 cut(s) 3029, 3118
BsrDI GCAATG 2 cut(s) 465, 1758
BsrI ACTGG 5 cut(s) 668, 835, 1588, 1961, 2128
BssECI CCNNGG 9 cut(s) 231, 539, 876, 1073, 1494, 1535, 2366, 2975, 3167
BssNI GRCGYC 3 cut(s) 838, 2847, 3152
BssT1I CCWWGG 5 cut(s) 539, 1073, 1535, 2366, 2975
Bst6I CTCTTC 1 cut(s) 510
BstACI GRCGYC 3 cut(s) 838, 2847, 3152
BstAPI GCANNNNNTGC 2 cut(s) 1370, 2660
BstC8I GCNNGC 6 cut(s) 571, 1143, 1864, 2436, 3109, 3113
BstDEI CTNAG 7 cut(s) 104, 359, 495, 1094, 1652, 2387, 2414
BstDSI CCRYGG 5 cut(s) 539, 876, 1073, 2366, 3167
BstF5I GGATG 8 cut(s) 805, 1228, 1267, 2098, 2521, 2560, 2911, 2962
BstFNI CGCG 3 cut(s) 88, 885, 2178
BstH2I RGCGCY 2 cut(s) 721, 2014
BstHHI GCGC 4 cut(s) 720, 2013, 2701, 2947
BstMAI GTCTC 3 cut(s) 334, 1627, 2720
BstMCI CGRYCG 1 cut(s) 2770
BstMWI GCNNNNNNNGC 6 cut(s) 1370, 2660, 2738, 2977, 3132, 3138
BstSFI CTRYAG 3 cut(s) 1559, 2928, 3133
BstSLI GKGCMC 1 cut(s) 1366
BstUI CGCG 3 cut(s) 88, 885, 2178
BstV1I GCAGC 4 cut(s) 471, 2750, 2851, 3119
BstV2I GAAGAC 3 cut(s) 33, 2769, 2859
BstX2I RGATCY 3 cut(s) 253, 1516, 2885
BstYI RGATCY 3 cut(s) 253, 1516, 2885
BsuRI GGCC 9 cut(s) 548, 1247, 1841, 2540, 2826, 2871, 2980, 3017, 3060
BtgI CCRYGG 5 cut(s) 539, 876, 1073, 2366, 3167
BtsCI GGATG 8 cut(s) 805, 1228, 1267, 2098, 2521, 2560, 2911, 2962
BtsI GCAGTG 2 cut(s) 2756, 2822
BtsIMutI CAGTG 5 cut(s) 1470, 2352, 2756, 2822, 3077
BtuMI TCGCGA 2 cut(s) 885, 2178
Cac8I GCNNGC 6 cut(s) 571, 1143, 1864, 2436, 3109, 3113
CaiI CAGNNNCTG 2 cut(s) 1567, 2936
CfoI GCGC 4 cut(s) 720, 2013, 2701, 2947
Cfr13I GGNCC 8 cut(s) 72, 228, 578, 1491, 1871, 2825, 3016, 3031
CseI GACGC 4 cut(s) 94, 827, 2855, 3141
CsiI ACCWGGT 2 cut(s) 691, 1984
Csp6I GTAC 2 cut(s) 68, 952
CviQI GTAC 2 cut(s) 68, 952
DdeI CTNAG 7 cut(s) 104, 359, 495, 1094, 1652, 2387, 2414
DraI TTTAAA 3 cut(s) 13, 1128, 2421
DraIII CACNNNGTG 1 cut(s) 3013
DrdI GACNNNNNNGTC 2 cut(s) 591, 1884
DseDI GACNNNNNNGTC 2 cut(s) 591, 1884
EaeI YGGCCR 2 cut(s) 1245, 2538
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
EciI GGCGGA 1 cut(s) 2985
Ecl136II GAGCTC 4 cut(s) 499, 1151, 1792, 2444
Eco130I CCWWGG 5 cut(s) 539, 1073, 1535, 2366, 2975
Eco147I AGGCCT 3 cut(s) 548, 1841, 3060
Eco24I GRGCYC 4 cut(s) 501, 1153, 1794, 2446
Eco47I GGWCC 6 cut(s) 72, 228, 578, 1491, 1871, 3031
Eco53kI GAGCTC 4 cut(s) 499, 1151, 1792, 2444
Eco57I CTGAAG 6 cut(s) 491, 1359, 1404, 2688, 2694, 2781
Eco88I CYCGRG 4 cut(s) 470, 1763, 3083, 3121
EcoICRI GAGCTC 4 cut(s) 499, 1151, 1792, 2444
EcoO109I RGGNCCY 1 cut(s) 578
EcoRI GAATTC 3 cut(s) 331, 1624, 2686
EcoT14I CCWWGG 5 cut(s) 539, 1073, 1535, 2366, 2975
EcoT22I ATGCAT 2 cut(s) 1259, 2806
EcoT38I GRGCYC 4 cut(s) 501, 1153, 1794, 2446
ErhI CCWWGG 5 cut(s) 539, 1073, 1535, 2366, 2975
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FaqI GGGAC 3 cut(s) 214, 591, 1477
FbaI TGATCA 3 cut(s) 462, 1755, 3004
FblI GTMKAC 2 cut(s) 1236, 2529
Fnu4HI GCNGC 7 cut(s) 485, 1292, 2585, 2739, 2840, 3116, 3133
FokI GGATG 8 cut(s) 812, 1235, 1274, 2105, 2528, 2567, 2898, 2949
FriOI GRGCYC 4 cut(s) 501, 1153, 1794, 2446
Fsp4HI GCNGC 7 cut(s) 485, 1292, 2585, 2739, 2840, 3116, 3133
FspBI CTAG 1 cut(s) 291
GlaI GCGC 4 cut(s) 719, 2012, 2700, 2946
GluI GCNGC 7 cut(s) 485, 1292, 2585, 2739, 2840, 3116, 3133
GsaI CCCAGC 2 cut(s) 1046, 2339
GsuI CTGGAG 6 cut(s) 254, 685, 1167, 1517, 1978, 2460
HaeII RGCGCY 2 cut(s) 721, 2014
HaeIII GGCC 9 cut(s) 548, 1247, 1841, 2540, 2826, 2871, 2980, 3017, 3060
HapII CCGG 2 cut(s) 2872, 3024
HgaI GACGC 4 cut(s) 94, 827, 2855, 3141
HhaI GCGC 4 cut(s) 720, 2013, 2701, 2947
Hin1I GRCGYC 3 cut(s) 838, 2847, 3152
Hin6I GCGC 4 cut(s) 718, 2011, 2699, 2945
HinP1I GCGC 4 cut(s) 718, 2011, 2699, 2945
HincII GTYRAC 4 cut(s) 661, 1237, 1954, 2530
HindII GTYRAC 4 cut(s) 661, 1237, 1954, 2530
HindIII AAGCTT 2 cut(s) 521, 1814
HpaII CCGG 2 cut(s) 2872, 3024
HphI GGTGA 5 cut(s) 681, 1051, 1189, 1974, 2482
Hpy166II GTNNAC 5 cut(s) 661, 1237, 1364, 1954, 2530
Hpy8I GTNNAC 5 cut(s) 661, 1237, 1364, 1954, 2530
Hpy99I CGWCG 1 cut(s) 3157
HpyCH4IV ACGT 2 cut(s) 817, 2110
HpyF10VI GCNNNNNNNGC 6 cut(s) 1370, 2660, 2738, 2977, 3132, 3138
HpyF3I CTNAG 7 cut(s) 104, 359, 495, 1094, 1652, 2387, 2414
HpySE526I ACGT 2 cut(s) 817, 2110
Hsp92I GRCGYC 3 cut(s) 838, 2847, 3152
HspAI GCGC 4 cut(s) 718, 2011, 2699, 2945
Ksp22I TGATCA 3 cut(s) 462, 1755, 3004
LmnI GCTCC 9 cut(s) 715, 1148, 1720, 1789, 2008, 2441, 2836, 3026, 3163
Lsp1109I GCAGC 4 cut(s) 471, 2750, 2851, 3119
MabI ACCWGGT 2 cut(s) 691, 1984
MaeI CTAG 1 cut(s) 291
MaeII ACGT 2 cut(s) 817, 2110
MbiI CCGCTC 2 cut(s) 3029, 3118
MfeI CAATTG 1 cut(s) 80
MflI RGATCY 3 cut(s) 253, 1516, 2885
MhlI GDGCHC 6 cut(s) 501, 1153, 1366, 1794, 2446, 3113
MlyI GAGTC 3 cut(s) 158, 1421, 3075
MmeI TCCRAC 4 cut(s) 702, 1995, 3135, 3141
Mph1103I ATGCAT 2 cut(s) 1259, 2806
MroXI GAANNNNTTC 6 cut(s) 94, 242, 548, 855, 1505, 1841
MseI TTAA 7 cut(s) 12, 897, 1127, 2190, 2292, 2420, 2427
MspA1I CMGCKG 1 cut(s) 2741
MspI CCGG 2 cut(s) 2872, 3024
MunI CAATTG 1 cut(s) 80
Mva1269I GAATGC 2 cut(s) 1826, 3045
MvnI CGCG 3 cut(s) 88, 885, 2178
MwoI GCNNNNNNNGC 6 cut(s) 1370, 2660, 2738, 2977, 3132, 3138
NcoI CCATGG 3 cut(s) 539, 1073, 2366
NlaIV GGNNCC 8 cut(s) 230, 579, 600, 1493, 1893, 2146, 2887, 3165
NmuCI GTSAC 4 cut(s) 826, 960, 2119, 2253
NruI TCGCGA 2 cut(s) 885, 2178
NsiI ATGCAT 2 cut(s) 1259, 2806
PaeR7I CTCGAG 2 cut(s) 3083, 3121
PceI AGGCCT 3 cut(s) 548, 1841, 3060
PcsI WCGNNNNNNNCGW 1 cut(s) 3119
PctI GAATGC 2 cut(s) 1826, 3045
PdmI GAANNNNTTC 6 cut(s) 94, 242, 548, 855, 1505, 1841
PfeI GAWTC 9 cut(s) 391, 559, 856, 1379, 1684, 1852, 2669, 2708, 3076
PflMI CCANNNNNTGG 1 cut(s) 1258
PkrI GCNGC 7 cut(s) 486, 1293, 2586, 2740, 2841, 3117, 3134
PleI GAGTC 3 cut(s) 157, 1420, 3075
PpsI GAGTC 3 cut(s) 157, 1420, 3075
PpuMI RGGWCCY 1 cut(s) 578
PshBI ATTAAT 1 cut(s) 2292
Psp124BI GAGCTC 4 cut(s) 501, 1153, 1794, 2446
Psp5II RGGWCCY 1 cut(s) 578
PspFI CCCAGC 2 cut(s) 1042, 2335
PspN4I GGNNCC 8 cut(s) 230, 579, 600, 1493, 1893, 2146, 2887, 3165
PspPI GGNCC 8 cut(s) 72, 228, 578, 1491, 1871, 2825, 3016, 3031
PspPPI RGGWCCY 1 cut(s) 578
PstI CTGCAG 2 cut(s) 2932, 3137
PstNI CAGNNNCTG 2 cut(s) 1567, 2936
PsuI RGATCY 3 cut(s) 253, 1516, 2885
PvuII CAGCTG 1 cut(s) 2741
RruI TCGCGA 2 cut(s) 885, 2178
RsaI GTAC 2 cut(s) 69, 953
RsaNI GTAC 2 cut(s) 68, 952
SacI GAGCTC 4 cut(s) 501, 1153, 1794, 2446
SalI GTCGAC 2 cut(s) 1235, 2528
SaqAI TTAA 7 cut(s) 12, 897, 1127, 2190, 2292, 2420, 2427
SatI GCNGC 7 cut(s) 485, 1292, 2585, 2739, 2840, 3116, 3133
Sau96I GGNCC 8 cut(s) 72, 228, 578, 1491, 1871, 2825, 3016, 3031
ScaI AGTACT 1 cut(s) 953
SchI GAGTC 3 cut(s) 158, 1421, 3075
SduI GDGCHC 6 cut(s) 501, 1153, 1366, 1794, 2446, 3113
SexAI ACCWGGT 2 cut(s) 691, 1984
SfcI CTRYAG 3 cut(s) 1559, 2928, 3133
Sfr274I CTCGAG 2 cut(s) 3083, 3121
SinI GGWCC 6 cut(s) 72, 228, 578, 1491, 1871, 3031
SlaI CTCGAG 2 cut(s) 3083, 3121
SmlI CTYRAG 5 cut(s) 1154, 2447, 3083, 3121, 3145
SmoI CTYRAG 5 cut(s) 1154, 2447, 3083, 3121, 3145
SseBI AGGCCT 3 cut(s) 548, 1841, 3060
SspMI CTAG 1 cut(s) 291
SstI GAGCTC 4 cut(s) 501, 1153, 1794, 2446
StuI AGGCCT 3 cut(s) 548, 1841, 3060
StyI CCWWGG 5 cut(s) 539, 1073, 1535, 2366, 2975
TaiI ACGT 2 cut(s) 820, 2113
TatI WGTACW 1 cut(s) 951
TauI GCSGC 3 cut(s) 1294, 2587, 3118
TfiI GAWTC 9 cut(s) 391, 559, 856, 1379, 1684, 1852, 2669, 2708, 3076
Tru1I TTAA 7 cut(s) 12, 897, 1127, 2190, 2292, 2420, 2427
Tru9I TTAA 7 cut(s) 12, 897, 1127, 2190, 2292, 2420, 2427
TscAI CASTG 5 cut(s) 1477, 2359, 2756, 2822, 3077
TseFI GTSAC 4 cut(s) 826, 960, 2119, 2253
TseI GCWGC 4 cut(s) 484, 2738, 2839, 3132
Tsp45I GTSAC 4 cut(s) 826, 960, 2119, 2253
TspDTI ATGAA 4 cut(s) 541, 816, 1834, 2109
TspGWI ACGGA 2 cut(s) 85, 1802
TspRI CASTG 5 cut(s) 1477, 2359, 2756, 2822, 3077
Van91I CCANNNNNTGG 1 cut(s) 1258
VneI GTGCAC 1 cut(s) 1362
VpaK11BI GGWCC 6 cut(s) 72, 228, 578, 1491, 1871, 3031
VspI ATTAAT 1 cut(s) 2292
XapI RAATTY 4 cut(s) 331, 1624, 2686, 3088
XcmI CCANNNNNNNNNTGG 1 cut(s) 1255
XhoI CTCGAG 2 cut(s) 3083, 3121
XmiI GTMKAC 2 cut(s) 1236, 2529
XmnI GAANNNNTTC 6 cut(s) 94, 242, 548, 855, 1505, 1841
XspI CTAG 1 cut(s) 291
ZrmI AGTACT 1 cut(s) 953
Zsp2I ATGCAT 2 cut(s) 1259, 2806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.