Rmu_sc0009534.1_g000001

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009534.1
OG0000223
Physical Location & Seq
Forward (+)
108 .. 572
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009534.1_g000001.1.cds

Sequence Viewer

Length: 465 bp
atgattactcttagacaaaaggatacttctaaaagtttgctcaaacaagttgtagttgatttacttaccagctcaaagaaaaatctttcctatggccaagttggaaggctggcaatgattattcttgggtctggtaattttgatgatgatgaactatacaagaaacttatgaaaaatctgaaatgcagtccactgtggaaggtgttcattcagaatctgtgtgggagtatcatcgcaagacagaaagggtctgtacttatcaataccagtcaagaaaagaaagatgtgtctcttgtccagggccttcatcaggctttggcagaaacttattatgcaaactggagggaggttaatgattatatttcacctgatagtttcttttatcttattgaatgccttctgatgtgggtatcttgctttcaaggttttgtatcaccaccaaatcatgtttcattgaatggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

154

Amino Acids

17.43

Weight (kDa)

8.87

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 94
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 3 cut(s) 392, 422, 457
AjnI CCWGG 1 cut(s) 297
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 294
AlwNI CAGNNNCTG 1 cut(s) 217
AoxI GGCC 2 cut(s) 94, 301
Asp700I GAANNNNTTC 2 cut(s) 203, 396
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 357, 426
BalI TGGCCA 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 299
BciVI GTATCC 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 294
BfuI GTATCC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 2 cut(s) 267, 344
Bse3DI GCAATG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 267, 344
BshFI GGCC 2 cut(s) 96, 303
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 294
BsmI GAATGC 1 cut(s) 398
BsnI GGCC 2 cut(s) 96, 303
BspANI GGCC 2 cut(s) 96, 303
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 2 cut(s) 267, 344
BssECI CCNNGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 11
BstENI CCTNNNNNAGG 1 cut(s) 308
BstMAI GTCTC 1 cut(s) 294
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 96, 303
BtgZI GCGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 254
CviAII CATG 1 cut(s) 446
CviJI RGCY 5 cut(s) 72, 96, 109, 303, 314
CviKI_1 RGCY 5 cut(s) 72, 96, 109, 303, 314
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 94
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 449
FaiI YATR 6 cut(s) 93, 157, 170, 333, 360, 447
FatI CATG 1 cut(s) 445
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 2 cut(s) 96, 303
Hin1II CATG 1 cut(s) 449
HinfI GANTC 1 cut(s) 214
HphI GGTGA 2 cut(s) 357, 426
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 3 cut(s) 180, 213, 402
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 4 cut(s) 99, 193, 314, 407
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 186, 335
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 1 cut(s) 449
LpnPI CCDG 9 cut(s) 82, 95, 117, 280, 284, 296, 311, 325, 381
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 1 cut(s) 136
MluNI TGGCCA 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 2 cut(s) 336, 340
Mox20I TGGCCA 1 cut(s) 96
MroXI GAANNNNTTC 2 cut(s) 203, 396
MscI TGGCCA 1 cut(s) 96
MseI TTAA 1 cut(s) 351
Msp20I TGGCCA 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 398
MvaI CCWGG 1 cut(s) 299
NlaIII CATG 1 cut(s) 449
PctI GAATGC 1 cut(s) 398
PdmI GAANNNNTTC 2 cut(s) 203, 396
PfeI GAWTC 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspPI GGNCC 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 217
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SaqAI TTAA 1 cut(s) 351
Sau96I GGNCC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 299
SetI ASST 5 cut(s) 74, 204, 351, 370, 427
Sse9I AATT 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 195
TasI AATT 1 cut(s) 136
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 198
TspDTI ATGAA 5 cut(s) 165, 185, 196, 296, 441
TspRI CASTG 1 cut(s) 198
XagI CCTNNNNNAGG 1 cut(s) 308
XmnI GAANNNNTTC 2 cut(s) 203, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.