Rmu_sc0024967.1_g000001

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024967.1
OG0000223
Physical Location & Seq
Reverse (-)
1 .. 2709
2709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024967.1_g000001.1.cds

Sequence Viewer

Length: 873 bp
atgcgtggggtggtacagcaactccagatagttctgatgatggtggagagggtggaagcggaacaggtggtggaggtgaaagatatgaatatggacaatcttctgtggatgaaggattccaatttacctgtgaaagtaattttgatcatgccacccaagatcaagaccacgaagctctgtgttgaagaaggcagagaaggaaagcaagagtcttcggtggagatcatggaggtttcaggcaagaaaaagatcaagcctgaccctttcactgatactgtgttttcttggtccctggaggacattttcaatgaggatctttacaaagacaaggtgaaaaagattcctgaatcatttcaatcggctcagcattactttcggtcttatatatatcctttactagaagaaacccgagcagaattgcattcaagtatggaaactcttaatagagcaccgtttgctgaagtagtgggttttgaagaagccaagccatatggaacaaagcaatatgatgtcaaggttgattgctggcgaaacaggttcattgatagtggcaaggagccatataaaactttgcccggtgatctttttgttttagctgatgctaaacctgaaactgtttctgacttacaaagagtagggaggtcatgggcttttgcttcggccacttatgtcccaggatgtgagaataaagatgacagtacctctctttatttcaaagtcaaggcatcaaaagagattgaagtcgaaaatagcaggacatcattttttatagttttcttggtgagtttagtccgtgatggaagaatttggaaagcgttgcacatgtccagaaatctgaagattatcaacgaagttctatgcactgattctatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

291

Amino Acids

33.55

Weight (kDa)

5.66

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AclWI GGATC 1 cut(s) 321
AcoI YGGCCR 1 cut(s) 660
AcsI RAATTY 1 cut(s) 804
AcuI CTGAAG 2 cut(s) 480, 857
AfaI GTAC 2 cut(s) 15, 700
AflIII ACRYGT 1 cut(s) 822
AgsI TTSAA 7 cut(s) 185, 307, 356, 426, 476, 715, 740
AjnI CCWGG 2 cut(s) 291, 673
AluBI AGCT 2 cut(s) 175, 596
AluI AGCT 2 cut(s) 175, 596
Alw21I GWGCWC 1 cut(s) 451
AlwI GGATC 1 cut(s) 321
Ama87I CYCGRG 1 cut(s) 408
AoxI GGCC 1 cut(s) 660
ApoI RAATTY 1 cut(s) 804
Asp700I GAANNNNTTC 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 288
AsuC2I CCSGG 1 cut(s) 576
AsuHPI GGTGA 4 cut(s) 88, 343, 590, 793
AvaI CYCGRG 1 cut(s) 408
AvaII GGWCC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 451
BccI CCATC 2 cut(s) 34, 791
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 2 cut(s) 293, 675
BclI TGATCA 1 cut(s) 144
BcnI CCSGG 1 cut(s) 576
BfaI CTAG 1 cut(s) 398
BlpI GCTNAGC 1 cut(s) 363
Bme1390I CCNGG 3 cut(s) 293, 576, 675
Bme18I GGWCC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 2 cut(s) 290, 558
BmrFI CCNGG 3 cut(s) 293, 576, 675
BmsI GCATC 2 cut(s) 589, 734
BpiI GAAGAC 1 cut(s) 204
BpmI CTGGAG 2 cut(s) 8, 314
Bpu1102I GCTNAGC 1 cut(s) 363
BpuMI CCSGG 1 cut(s) 576
BsaJI CCNNGG 2 cut(s) 291, 673
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
BseBI CCWGG 2 cut(s) 293, 675
BseDI CCNNGG 2 cut(s) 291, 673
BseGI GGATG 2 cut(s) 114, 683
BseMII CTCAG 1 cut(s) 377
BshFI GGCC 1 cut(s) 662
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 408
BsiSI CCGG 1 cut(s) 576
BslFI GGGAC 2 cut(s) 274, 656
BsmFI GGGAC 2 cut(s) 274, 656
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 1 cut(s) 662
BsoBI CYCGRG 1 cut(s) 408
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 6 cut(s) 144, 159, 222, 249, 313, 580
Bsp1720I GCTNAGC 1 cut(s) 363
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 662
BspCNI CTCAG 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 290, 558
BspPI GGATC 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 291, 673
BssMI GATC 6 cut(s) 144, 159, 222, 249, 313, 580
Bst2UI CCWGG 2 cut(s) 293, 675
Bst4CI ACNGT 4 cut(s) 277, 453, 616, 698
BstAPI GCANNNNNTGC 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 114, 683
BstKTI GATC 6 cut(s) 147, 162, 225, 252, 316, 583
BstMBI GATC 6 cut(s) 144, 159, 222, 249, 313, 580
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 2 cut(s) 293, 675
BstNSI RCATGY 1 cut(s) 826
BstSCI CCNGG 3 cut(s) 291, 574, 673
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 1 cut(s) 662
BtsCI GGATG 2 cut(s) 114, 683
BtsIMutI CAGTG 2 cut(s) 267, 861
Cac8I GCNNGC 1 cut(s) 527
Cfr13I GGNCC 1 cut(s) 288
Csp6I GTAC 2 cut(s) 14, 699
CviAII CATG 4 cut(s) 148, 226, 645, 823
CviJI RGCY 9 cut(s) 175, 256, 362, 482, 487, 559, 596, 650, 662
CviKI_1 RGCY 9 cut(s) 175, 256, 362, 482, 487, 559, 596, 650, 662
CviQI GTAC 2 cut(s) 14, 699
DdeI CTNAG 1 cut(s) 363
DpnI GATC 6 cut(s) 146, 161, 224, 251, 315, 582
DpnII GATC 6 cut(s) 144, 159, 222, 249, 313, 580
EaeI YGGCCR 1 cut(s) 660
Eco47I GGWCC 1 cut(s) 288
Eco57I CTGAAG 2 cut(s) 480, 857
Eco88I CYCGRG 1 cut(s) 408
EcoRII CCWGG 2 cut(s) 291, 673
FaeI CATG 4 cut(s) 151, 229, 648, 826
FaqI GGGAC 2 cut(s) 274, 656
FatI CATG 4 cut(s) 147, 225, 644, 822
FauNDI CATATG 1 cut(s) 490
FbaI TGATCA 1 cut(s) 144
FokI GGATG 2 cut(s) 121, 690
FspBI CTAG 1 cut(s) 398
GsuI CTGGAG 2 cut(s) 8, 314
HaeIII GGCC 1 cut(s) 662
HapII CCGG 1 cut(s) 576
Hin1II CATG 4 cut(s) 151, 229, 648, 826
HinfI GANTC 5 cut(s) 116, 209, 340, 347, 866
HpaII CCGG 1 cut(s) 576
HphI GGTGA 4 cut(s) 88, 343, 590, 793
Hpy188I TCNGA 3 cut(s) 36, 622, 837
Hpy188III TCNNGA 4 cut(s) 25, 163, 344, 828
HpyAV CCTTC 3 cut(s) 106, 182, 191
HpyCH4III ACNGT 4 cut(s) 277, 453, 616, 698
HpyCH4V TGCA 3 cut(s) 421, 820, 861
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 1 cut(s) 363
Hsp92II CATG 4 cut(s) 151, 229, 648, 826
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 6 cut(s) 144, 159, 222, 249, 313, 580
LmnI GCTCC 1 cut(s) 556
LweI GCATC 2 cut(s) 589, 734
MaeI CTAG 1 cut(s) 398
MalI GATC 6 cut(s) 146, 161, 224, 251, 315, 582
MboI GATC 6 cut(s) 144, 159, 222, 249, 313, 580
MboII GAAGA 7 cut(s) 92, 197, 204, 413, 488, 813, 850
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 4 cut(s) 121, 138, 416, 804
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 7 cut(s) 42, 67, 223, 289, 304, 633, 712
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 1 cut(s) 441
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 3 cut(s) 293, 576, 675
Mva1269I GAATGC 1 cut(s) 421
MvaI CCWGG 2 cut(s) 293, 675
MwoI GCNNNNNNNGC 1 cut(s) 455
NciI CCSGG 1 cut(s) 576
NdeI CATATG 1 cut(s) 490
NdeII GATC 6 cut(s) 144, 159, 222, 249, 313, 580
NlaIII CATG 4 cut(s) 151, 229, 648, 826
NlaIV GGNNCC 2 cut(s) 290, 558
NspI RCATGY 1 cut(s) 826
PciI ACATGT 1 cut(s) 822
PctI GAATGC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 4 cut(s) 116, 340, 347, 866
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PscI ACATGT 1 cut(s) 822
Psp6I CCWGG 2 cut(s) 291, 673
PspGI CCWGG 2 cut(s) 291, 673
PspN4I GGNNCC 2 cut(s) 290, 558
PspPI GGNCC 1 cut(s) 288
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 2 cut(s) 15, 700
RsaNI GTAC 2 cut(s) 14, 699
SaqAI TTAA 1 cut(s) 441
Sau3AI GATC 6 cut(s) 144, 159, 222, 249, 313, 580
Sau96I GGNCC 1 cut(s) 288
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 3 cut(s) 293, 576, 675
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 2 cut(s) 589, 734
SinI GGWCC 1 cut(s) 288
Sse9I AATT 4 cut(s) 121, 138, 416, 804
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 3 cut(s) 291, 574, 673
TaaI ACNGT 4 cut(s) 277, 453, 616, 698
TaqI TCGA 1 cut(s) 744
TaqII GACCGA 1 cut(s) 366
TasI AATT 4 cut(s) 121, 138, 416, 804
TfiI GAWTC 4 cut(s) 116, 340, 347, 866
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 2 cut(s) 274, 868
TspDTI ATGAA 3 cut(s) 101, 125, 529
TspGWI ACGGA 1 cut(s) 782
TspRI CASTG 2 cut(s) 274, 868
VpaK11BI GGWCC 1 cut(s) 288
XapI RAATTY 1 cut(s) 804
XceI RCATGY 1 cut(s) 826
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.