Rh4DG436600

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000223
Physical Location & Seq
Forward (+)
63991124 .. 64004866
13743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG436600.1

Sequence Viewer

Length: 8766 bp
ATGATGGAGGTTTCAGGCAAGAAAAAGATCAAGCCTGACCCTTTCACTGATATTGTGTTTTCTTGGTCCCTGGAGGACATTTTCAATGAGGATCTTTACAAAGACAAGGTGAAAAAGATTCCTGAATCATTTCAATCGGCTCAACATTACTTTCGGTCTTATATATATCCTTTACTGGAAGAAACCCGAGCAGAATTGCATTCAAATATGAAAACTCTTAATAGAGCACCGTTTGCTCAAGTAGTGGGTTTTGAAGAAGCCCAGCCATATGGAACAAAGCTATATGATGTCAAGGTTGATTACTGGCATAACAGGTTCATTGATAGTGGCAAGGAGCCATATAAAACTTTGCCCGGTGATCTTTTTGTTTTAGCTGATGCTAAACCTGAAACTGTTTCCGATTTACAAAGAGTAGGGAGGTCATGGGCTTTTGCATCGGCCACTAATTATGTCCCAGAAAGTGAGAATGAAGATGACAGTACCTCTCTTTATTTCAAAGTCATGGCATCAAAAGAGTTTGAAGTCAAAAATAGCACGACATCACTTTTTATAGTTTTCTTGGGGAGTTTAATCCGTGATGGAAGAATTTGGAAAGCGTTGCACATGTCCAGAAATCTGAATATTATCAACGAAGTTCTATGCACTGATTCTATGCCGCTTGCGGCTGCAGAAGGCATCTTATCATCTTTTATCAATATATTGAGATTATTCTCTTTTATCTCTGGTGGACTCCAGAATCGTTTGCTTAGGTTTATTGCTGGTAAACCTAGTTTATCATTCCGACTGCGTCATTTATCATCTGGATTGAATGAATCCCAAACTGGGGCAGTGTTGGCCTGCCTTGAAATGCTGCATTCTGGTGAAAAGTCTGCCGTGCAACTTATCTGGGGTCCTCCTGGTACTGGAAAAACAAAAACCACAGTTACTCTGCTTTCAACCCTGCTACAGATGAATTGTAGGACTCTTATTTGTGCTCCAACAAATGTTGCAATAACTGGAGTTGCTTCTCGTCTTGTGAAGATGGTGAGTAAAGCAGAGCCAAATGATTTGTTTTGTTCTTTAGGAGAAATTCTTCTGTTTGGGAATAAGGAGCGACTCAAAATTGGTGCAGACATTGAAGAAATTTATATGGATTGCCGTGTCAAAAGGCTTGAAGATTTTTTGGGGCCAAAGACTGGTTGGAGGGATTGCTTTGCTTCCATGATAGGTTTACTTGAGGATTGTGTTTCTGATTACCATATTTTCTTGGAAAATGAGTTCATGAAAGAGGCAGAACTAAAGAATGTCAGTGAAACAAAAGATAAAGAATGCAGAAGAGGTGCTCAAGTTAAAAAGGAGAAATGCAAAACATTTGTTGAATTTTTGAGAGATGGATTTGGGTCTACTGCAACGCCGTTAAGATATTGCATTTCTGTGTTCTGTACTCATATAGGGAAAAATTATATTTCGGTAGACAATTTCCAAGCCTTGTTGCTTTATGTGGTGAAAAAGATTCCTGAATCATTTCAATCGGCTCAGCATTACTTTGGGTCTTATATATATCCTTTACTAGAAGAAACCCGAGCAGAATTGCATTCAAGTATGGAAACTCTTAATAGAGCACCGTTTGCTGAAGTAGTGGGTTTTGAAGAAGCCAAGCCATATGGAACAAAGCAATATGATGTCAAGGTTGATTGCTGGCGAAACAGGTTCATTGATAGTGGCAAGGAGCCATATAAAACTTTGCCCGGTGATCTTTTTGTTTTAGCTGATGCTAAACCTGAAACTGTTTCTGACTTACAAAGAGTAGGGAGGTCATGGGCTTTTGCTTCGGCCACTTATGTCCCAGGATGTGAGAATGAAGATGACAGTACCTCTCTTTATTTCAAAGTCAAGGCATCAAAAGAGATTGAAGTCGAAAATAGCAGGACATCACTTTTTATAGTTTTCTTGGTGAGTTTGGTCCGTGATGGAAGAATTTGGAAAGCGTTGCACATGTCCAGAAATCTGAAGATTATCAACGAAGTTCTATGCACTGATTCTATGGTTCAGAAAGATTTCTGCTCTGAAAGGAAAAATGACATCTGGAATCAGAGTATAGTTGAGAGTTTATCATCTGGATTGAATGAATCCCAAACTGGGGCAGTGTTGGCCTGCCATGAAATGCTGCATTCTGGTGAAAAGTCTGCTGTGGAACTTATCTGGGGTCCTCCTGGTACTGGAAAAACAAAAACCACAGTCACTCTGCTTTCAACCCTGCTACAGATGAATTGTAGGACTCTTATTTGTGCTCCAACAAATGTTGCAATAACTGGAGTTGCTTCTCGTCTTGTGAAGATGGTGAGTAAAGCAGAGCCAAATGATTTGTTTTGTTCTTTAGGAGAAATTCTTCTGTTTGGTAATAAGGAGCGACTCAAAATTGGTGCAGACATTGAAGAAATTTATATGGATTGCCGTGTCAAAAGGCTTGTAGATTGTTTTGGGCCAAGGACTGGTTGGAGGCCTTGCTTTTCTTCCATGATCGGTTTACTTGAGGATTGCGTTTCTGATTACCATATTTTCTTGGGAAATGAGTTCACGAAAGAGACAGAACTAAAGAATGTCAGTGAAACAAAATATAAAGAATGCAGAAGAGGTGCTCAAGTTATAAAGGAGAAACGCAAAACATTTGTTCAATTTTTGAGAGAGAGATTTTTGTCTACTGCAACGCCATTAAGATATTGCATTTCTGTGCTCTGTACTCATATAGGGAAAAATTATATTTCTGTAGACAATTTCCAAGACTTGATTTCGCTTATCCGGTTAGTTGATTCCTTTGAGTTACTGTTGTCTCAAGATAATGTTGATTCTGAAGCTTTGGAAGAACTCTTTTCTCATTCGGATGTTGAAGATGTGTCCGAGTCGTTTGTAGGTTACTCCTTTGATCTTTGTATGATAAGAAGGGATTGCCTTTCAGCTTTACGCACTCTACGGGATTCTCTTAGTCAACTTAAACTTCCAAATATTAAGAATGAGGAATCTATACGGAAGTTCTGTTTTCAAAGAGCATCTCTAATATTTTGCACTGCATCTACTTCGTATAAGCTGCATAGAGTGGCAATGGAACCACTAAGCATTGTTGTTATTGACGAGGCTGCACAGCTAAAAGAGTGTGAGTCAACAATACCCCTGCAACTTCCAGGTGTGAAGCATGCTGTTCTTGTTGGTGATGAATGTCAGTTACCAGCTACGGTAATAAGCAAGGTTTCTGATGAAGCTGGTTTTGCAAGAAGCTTGTTTGAGAGGTTGAGCTTAATGGGTCATTCAAAACATATTTTAAATATGCAATACAGAATGCATCCATCAATAAGTTTATTCCCAAATTCAAATTTCTATAAAGACTTGATCCAGGATGCTCCAAATGTAAAACGAAGAAGCTATGAGAAGCACTATCTTCCAGGAGCAATGTTTGGTCCTTATTCTTTTATAAATGTGATTGATGGAAGAGAGGAAAAAGAAGAGGATGGACCCAGTCGGAAAAATATAGTGGAGGTTGCTATTGTTTCAAAAATACTGCGGAATCTGTACAAAGGATGGGTTGAATCAAAACAGAGACTCAGTATTGGTATAGTGTCTCCCTATGCTGCTCAAGTAATCACAATTAAGGACAGAGTGGGTAAGAAATATGATAAGCTTGATGGCTTTGAAGTGAAGGTAAAAACAGTTGATGGGTTTCAAGGTGGGGAAGAGGACATAATTATAATGTCCACCGTACGATCCAACAGCCATCAATCACTTCAGTTCATTTCAAAATCGCAGAGAGTTAATGTCTCTCTTACAAGGGCTAGGCACTGTTTGTGGATTTTGGGGAATGAAAGAACGCTTTGCAATGGTGAATCTGTTTGGAATGACTTGGTCCTTGAGGCCAAAAGTCGTCGATGCTTCTTTAATGCCGATGAAGACAAGGATTTAGCCAAGGCCATATTAGGGTTAAAGAAAGAGTTTGATCAATTTGATGATTTGCTCAATGCCAACAGCATAGTTTTTAGAAGCGCTAGATGGAAGGTACTTTTCAGTGAATACTTTCTGAAGTCATTCAAGAAACTGACATCAGTCCGCTTGAAGAAGTCGGCGCTAAATCTTCTACTGAAGCTTTCCAGTGGTTGGAGACCAAAGAGGCGAAGTGTTGAGACACATTCTGGTAGCTCTTCCATGATCTTGAAGAAATTTAAAGTTGAAGGTCTGTACATTGTTTGCACTAATGACATCTCAAAGAACCTACAATACGTTCAAGTATTAAAGATCTGGGACATATTGCCTCTGGAGGATATCCCAAAGTTGATAAACCGCCTGGATGGTATTTTCAACAGATATACTGATAACTTTATCAATCTTTGCAAGGAGAAGTGTCTCCATGGTGATCTAGAGGTTCCAAAAAGCTGGTCACCGTCTTTGGAATTTTCCCAGTTTAAGGATCTTATCATTAGTGAAGCTCAGAGTGATTTAGTTGGTGACACTTCTGATTGTAGAAGCTATGTTGAGAATTCACAGGTTAGCGAGAGTTTGTTGCTGATGAAATTTTATTCCTTATCATCTGGGGCAGTAAACCACTTGCTGTCAGACCGTGAGGGTAGAGAACTAGATCTTCCATTTGAAGTTACAGATGAAGAGATGGATATTATCCTTTATCGTAGAAGTTCCTTTATAGTGGGACGATCGGGAACTGGGAAAACTACAGTTTTAACCATGAAATTGTTTAAAAAAGAACAGTGCCACCAATTTGCAGTTGAAGGATGCTATAGTAGTCAAGATACTAGCAAGGTTGAGCAGAGTTCTGCAGCTACTGAAGGGAATGTTCTGCGCCAGCTTTTTGTGACAGTGAGTCCTAAGCTATGTTTTGCCATCAAGCGACATGTTTCACACTTGAAAAGTTTTGCATGTGGCGGAGGTAACTCAACTGAAAGAGGTTTAATTGATATGGCTGATTTTGATGAGGAGGAAAACCAATTCAAGGATTTCCAAGATTCATTTCATGATATTCCTCCGAGTTCTTACCCACTTGTCATTACATTTCATAAGTTTCTGATGATGCTCGATGGAACATTGAGTAACTCATACTTTGAAAGATTCCTTGATGTGAAAGCTACTGTTGGCCATTTTAAGAGTTCGAGATCAGTTGCATTTCAGAGCTTTATAAGGACGAAAGAAGTTAATTATGAGAGGTTTAGCTCTTTGTATTGGCCCCGTTTTAATACTAAGATAACAAAGAAGCTTGACATTTCAAGAGTCTTTATAGAGATTATTTCTTACATAAAAGGTGGCTTAGGAGCTATAGATGCATGTGATGGTAAACTCAGCCGGGAGGATTATGTTCAACTGTGCGAGGGCCGGGGTTCTAATTTGAGCAAGCAAAAGAGAGAAGCAATATACGATGTTTTTCAGGCTTATGAAAAGTTGAAGAAGGAAAATGGTGAATTTGATCTGGCTGATTTTGTAATTGATCTTCACCGTCGGCTCAAGCATGAAAAATATAAGGGTGATCTGATGGAATTTGTTTATATTGATGAGGTTCAAGATCTCACAATGAGTCAAATTGCTTTGTTTAAACACATGTGCAACAATGTTGAAGAGGGATTTGTCTTTTCTGGTGATACAGCACAAACAATAGCAAGGGGTATTGACTTTAGGTTTCAGGATATACGACATCTGTTCTACAAGAAGTTTGTATTGGAGTCAAGAAACAATAACAACGATGAAAAAGGCCTCATCTCTGAATTACTTCAGTTGACTCAAAACTTCCGTACTCATGCTGGTATATTGAAGTTATCACAAAGCATTGTTGAACTACTGTATCGGTTTTTCCCCTTTTCTGTTGATGTTTTAAAACCTGAAACCAGTCTGATTTATGGTGAAGCTCCAGTTTTGCTTGAATCTGGGGAAAACGAAAATGCAATCATGAAAATTTTTGGTAACAGTGGAAATATGGTTGGCTTTGGTGCAGAGCAGGTGATTTTGGTGCGAGATGATAGTGCTCGACGAGAAATATCCAAATTTGTAGGGAAGCATGCTCTTGTCCTAACCATAGTGGAGTGTAAGGGCCTTGAGTTTCAGGATGTCCTCTTATACAACTTTTTCAGCACATCACCTTTGAAAAATCAGTGGAGGGTTATATATGATTACATGAAGGAACAAGATTTACTCGACTCCACATCACCTATGCGCTTTCCAAGTTTCAGTGAATCGAAACACAACATATTGTGCTCTGAACTGAAGCAATTATATGTGGCTGTTACTCGAACAAGACAGAGATTGTGGATTTGTGAAAATGTGGAAGACCTCTCGAAACCTATGTTTGACTATTGGAAGAAAAAATGTCTTGTGCAACAAAGGCAGCTAGATGATTCACTTACCCAGGCCATGCAAGTGGCAAGCAGTCCAGAGGAGTGGAAATCCCGAGGCACTAAGCTATATCATGAACATAACTATGAAATGGCCACAATGTGCTTTGAAAGAGCTGGTGACACTTACTGGGAAAGGAGGTCTAAAGCCTCCGGCCTTAAAGCTATTGCTGACCGTATGCGAACATCAAATCCCGAAGAGGCTAAATCGATCCTTAGAAAAGCTGCTGAAATATTTGATGCTATTGGCAAGGCAGATTCTGCTGCGAGATGTTTTTCTGATTTGGGGGAGTATGAAAGAGCAGCTAGGATATATTTGGAAAAATGTGGAGACTCTGAACTTCAGAGAGCGGCAGAATGTTTTTCACTAGCGGGATGCTATAAGGATGCTGCAGATGTCTATGCCAAGGGAAATTTTTTCTCAGAGTGTCTCACTGTTTGTGCAAATGGGAAACTATTTGAAATGGGTTTGCAGTATATTAATTATTGGAAACAGCATGCTGTTGAGGACCGTGCTAAGGCTAGTAGAGGGGAAGGAATAGATAAAATGGAGCAGGAATTTTTAGAGAGCTGCGCACTTCACTATCATAAGTTGAAAGATAACAGATTCATGATGAAATTTGTGAAAGCTTTCAATTCTATAATATTGATGCGGGACTTTTTGAAGAATATAGGGAGCCTTGATGAGCTTTTGTCATTGGAGGAAGAATTTGGAAATTATCTGGAAGCCGCAAACATCGCCCAGCTTAAAGGTGAAATCCTACTTGAATCTGATTTCCTTGGAAAGGCAGGTAAGTTCAAAGAGGCCTCACTGCATATTCTGTTTTATGTAATTTCCAAGTCTCTTTGGTCATCTGGTGGCAAGGGCTGGCCCATGGAAAAGTTTCCACAACAGGGGGAGCTTCTGACAAAGGCCAAGTCATTTGCCAAGAATGGGAAAGATAACGTTTATCAGCTGGTTTGCGCTGAGTCGGAGATTTTATTGAATGGGCAGGATAACTTGGCTGTTTTGAAACATCAAATGGATGCTTCTGAAAGACATCAGAGTATTAGAGGTGAAGTGTTATCAGCTCGAAAAATTTTGGACGCCCATTTTTCTTCAAGAACTGATGAGTATTTATGGGAGAAAGAATTGATTGGAGATCTTGTAAAGCATTCAGAAGATAAAATATCTAGAAATCAGGTGTCCATTGATTCGCTTGTCTACTACTGGAATTTCTGGAAGGAGAAGATTCTTCACATCATTGAATCTGTAGGATGTGTGGAAACTCCAGGGTACAATAGTTATGTAGAACTCTGTTTTACTTGTTTAGGAGTTTGGAGGTTGTATCATAATCTGAATCCAATCTATGTTTTACTGGTCCCTGATGCTGATTGGGTTAGAGATCTGGACAAAAGGCATTTGAAAAGTTATGGGAAGTTGGTCTCCATTGATGTTCATCAGCTCATTTCAGCAGCTCAGTATTATTGGAGTTCAGAACTGCTCTCCGTTGGCATCAAAGTTTTGGAGAAGCTTGAAGCACTTTTCAAGTTCCCACTGAAGAATTCTGACTCGACATTCTTCCAGTGCAGGGCACTTACCCTTATCTATGATGTTGCAAGAAATCTTTTGGATTCCAAATGTCTGAAGCCAAGGTATCAAGATTGCTTGACACTACAGAATATGGTAACATTTTCGACTGGGGAGTATGTTGATTACATCTTTCCCTTAGATTGGAGGAATTCATTGAGACAGAATATGATTTCTCTTAGAAGAACTGATGCTTCAAAGAATGTGCTGAATCAAGTTATAGTTGAATATGCCAGCTTGAACGACGAGCTGTCTTATGGGCAGATTGGAAGGATCGCAATGATCATCCTCGGGTCAGGTAAGCTGCTGAATACTGAGCTCTGTGTTCAGCTTGTGAAAAAGCTTGAAATCAATAAACCATGGAAGGCCTTCATTGAGAATCTCTGTGCAAGCATTGGACCTGAACATACTCGTCAGGAACCAATAGAGGTGTCTGTCATGTGGTGGTTACATGATGCTTTGGTTGAAACTTATAGTGCCAACTGGAGGGAGGTTTCCGACTACATAACACCTGGTTGCTTCTTGTATCTTGTGGAGCGCCTTCTGTTTTCCGCAAGTTGCTCTCAAGGTTTTGTCATCACTACAAGTTCTTGCTTTATTGAATGGCTGATATACCAGGATGAAGATACCAGCTTACGTTCCATGGTGACTGGTGGGGGCCATTCTCTGGACGACATTCTTCCATTTGTGATTACTGTGGTTCGCGAGTGTATTTTTATCAAGAAGGATATGATTGAATGGATTGAGAAGTCCGACAGAAATTGGATGCAGTATTATCAGCCACTCATGTTGCGATTGCGCGAAGTCTCAATCGAAAACAAACAAATAACAAGACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

2921

Amino Acids

333.84

Weight (kDa)

6.51

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 77 - 206 2.9e-59 Domain of unknown function (DUF6469)
AAA_11 PF13086 269 - 386 5.3e-14 AAA domain
DUF6469 PF20073 535 - 663 7.2e-62 Domain of unknown function (DUF6469)
AAA_11 PF13086 701 - 1074 3e-34 AAA domain
AAA_19 PF13245 721 - 1069 2.4e-06 AAA domain
AAA_12 PF13087 1082 - 1278 2.3e-55 AAA domain
UvrD-helicase PF00580 1786 - 1875 6.5e-08 UvrD/REP helicase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 2627, 3446, 3719, 5153
AarI CACCTGC 1 cut(s) 5953
Acc16I TGCGCA 1 cut(s) 6931
Acc36I ACCTGC 2 cut(s) 5953, 7136
AccB7I CCANNNNNTGG 4 cut(s) 1175, 2471, 4122, 8593
AccBSI CCGCTC 1 cut(s) 6707
AccI GTMKAC 5 cut(s) 1382, 1452, 2678, 2748, 7560
AccII CGCG 2 cut(s) 8631, 8727
AclI AACGTT 1 cut(s) 7302
AclWI GGATC 6 cut(s) 99, 3358, 3729, 4440, 6562, 8207
AcoI YGGCCR 4 cut(s) 438, 1812, 5110, 6450
AcyI GRCGYC 1 cut(s) 7443
AdeI CACNNNGTG 1 cut(s) 6459
AfeI AGCGCT 1 cut(s) 4012
AflIII ACRYGT 4 cut(s) 603, 1974, 4870, 5568
AhdI GACNNNNNGTC 2 cut(s) 4839, 8176
AjuI GAANNNNNNNTTGG 4 cut(s) 4971, 5003, 5669, 5701
AloI GAACNNNNNNTCC 4 cut(s) 1241, 1273, 6532, 6564
AlwI GGATC 6 cut(s) 99, 3358, 3729, 4440, 6562, 8207
AlwNI CAGNNNCTG 2 cut(s) 4802, 6617
Ama87I CYCGRG 4 cut(s) 186, 1560, 6411, 8216
Aor51HI AGCGCT 1 cut(s) 4012
ArsI GACNNNNNNTTYG 4 cut(s) 4385, 4417, 7259, 7291
AseI ATTAAT 1 cut(s) 6837
AspLEI GCGC 8 cut(s) 4013, 4093, 4821, 6180, 6932, 7322, 8466, 8727
AsuC2I CCSGG 4 cut(s) 354, 1728, 5318, 5348
AvaI CYCGRG 4 cut(s) 186, 1560, 6411, 8216
BaeGI GKGCMC 1 cut(s) 7933
BaeI ACNNNNGTAYC 4 cut(s) 5792, 5825, 7624, 7657
BalI TGGCCA 2 cut(s) 5112, 6452
BanII GRGCYC 1 cut(s) 8247
BarI GAAGNNNNNNTAC 2 cut(s) 5445, 5477
BbsI GAAGAC 2 cut(s) 3924, 6297
BceAI ACGGC 4 cut(s) 857, 1122, 1378, 2418
BcgI CGANNNNNNTGC 2 cut(s) 3036, 3070
BclI TGATCA 2 cut(s) 3964, 8208
BcnI CCSGG 4 cut(s) 354, 1728, 5318, 5348
BfoI RGCGCY 3 cut(s) 4014, 4094, 8467
BfuAI ACCTGC 2 cut(s) 5953, 7136
BglII AGATCT 5 cut(s) 4260, 4600, 5533, 7498, 7741
BlpI GCTNAGC 1 cut(s) 1515
BmeRI GACNNNNNGTC 2 cut(s) 4839, 8176
BmeT110I CYCGRG 4 cut(s) 186, 1560, 6411, 8216
BmrI ACTGGG 7 cut(s) 831, 2127, 3483, 4417, 4692, 6496, 8046
BmuI ACTGGG 7 cut(s) 831, 2127, 3483, 4417, 4692, 6496, 8046
BoxI GACNNNNGTC 1 cut(s) 4070
BpiI GAAGAC 2 cut(s) 3924, 6297
BpmI CTGGAG 8 cut(s) 92, 716, 1017, 2313, 4301, 5859, 7611, 8431
Bpu10I CCTNAGC 4 cut(s) 746, 4845, 5281, 6873
Bpu1102I GCTNAGC 1 cut(s) 1515
BpuMI CCSGG 4 cut(s) 354, 1728, 5318, 5348
Bsa29I ATCGAT 1 cut(s) 6566
BsaBI GATNNNNATC 1 cut(s) 7794
BsaHI GRCGYC 1 cut(s) 7443
BsaI GGTCTC 2 cut(s) 4120, 7786
BsaWI WCCGGW 1 cut(s) 2778
BsaXI ACNNNNNCTCC 2 cut(s) 7488, 7518
Bse3DI GCAATG 4 cut(s) 3084, 3429, 3853, 8211
Bse8I GATNNNNATC 1 cut(s) 7794
BseCI ATCGAT 1 cut(s) 6566
BseJI GATNNNNATC 1 cut(s) 7794
BseMI GCAATG 4 cut(s) 3084, 3429, 3853, 8211
BseMII CTCAG 8 cut(s) 1529, 3589, 4466, 5326, 6792, 7314, 7829, 8232
BseRI GAGGAG 2 cut(s) 4967, 6413
BseSI GKGCMC 1 cut(s) 7933
BseYI CCCAGC 2 cut(s) 261, 7098
BsgI GTGCAG 5 cut(s) 1128, 2424, 3099, 5976, 7945
Bsh1236I CGCG 2 cut(s) 8631, 8727
Bsh1285I CGRYCG 1 cut(s) 4676
BshVI ATCGAT 1 cut(s) 6566
BsiEI CGRYCG 1 cut(s) 4676
BsiHKCI CYCGRG 4 cut(s) 186, 1560, 6411, 8216
BsiSI CCGG 6 cut(s) 354, 1728, 2779, 5317, 5347, 6510
BsiWI CGTACG 1 cut(s) 3730
BslFI GGGAC 7 cut(s) 52, 437, 1808, 4280, 4683, 7025, 7703
BsmFI GGGAC 7 cut(s) 52, 437, 1808, 4280, 4683, 7025, 7703
BsmI GAATGC 8 cut(s) 199, 853, 1313, 1573, 2149, 2609, 3318, 7510
Bso31I GGTCTC 2 cut(s) 4120, 7786
BsoBI CYCGRG 4 cut(s) 186, 1560, 6411, 8216
Bsp1407I TGTACA 2 cut(s) 3543, 4203
Bsp1720I GCTNAGC 1 cut(s) 1515
Bsp19I CCATGG 4 cut(s) 4372, 7230, 8285, 8568
Bsp68I TCGCGA 1 cut(s) 8631
BspCNI CTCAG 8 cut(s) 1528, 3588, 4465, 5325, 6791, 7315, 7828, 8233
BspDI ATCGAT 1 cut(s) 6566
BspFNI CGCG 2 cut(s) 8631, 8727
BspHI TCATGA 5 cut(s) 1260, 4990, 5913, 6430, 6966
BspMAI CTGCAG 3 cut(s) 670, 4798, 6751
BspMI ACCTGC 2 cut(s) 5953, 7136
BspPI GGATC 6 cut(s) 99, 3358, 3729, 4440, 6562, 8207
BspQI GCTCTTC 1 cut(s) 4171
BspTNI GGTCTC 2 cut(s) 4120, 7786
BsrBI CCGCTC 1 cut(s) 6707
BsrDI GCAATG 4 cut(s) 3084, 3429, 3853, 8211
BsrGI TGTACA 2 cut(s) 3543, 4203
BssNI GRCGYC 1 cut(s) 7443
BssT1I CCWWGG 9 cut(s) 2465, 3933, 4372, 6762, 7135, 7230, 7988, 8285, 8568
Bst6I CTCTTC 9 cut(s) 1309, 2605, 3457, 3471, 3699, 4171, 4620, 5580, 6549
BstACI GRCGYC 1 cut(s) 7443
BstAPI GCANNNNNTGC 3 cut(s) 233, 1607, 6617
BstAUI TGTACA 2 cut(s) 3543, 4203
BstDSI CCRYGG 4 cut(s) 4372, 7230, 8285, 8568
BstEII GGTNACC 1 cut(s) 4401
BstENI CCTNNNNNAGG 1 cut(s) 7139
BstFNI CGCG 2 cut(s) 8631, 8727
BstH2I RGCGCY 3 cut(s) 4014, 4094, 8467
BstHHI GCGC 8 cut(s) 4013, 4093, 4821, 6180, 6932, 7322, 8466, 8727
BstMCI CGRYCG 1 cut(s) 4676
BstMWI GCNNNNNNNGC 9 cut(s) 233, 833, 1607, 2129, 3242, 5294, 6346, 6617, 7094
BstNSI RCATGY 9 cut(s) 607, 1978, 3173, 4874, 4899, 5301, 5572, 6026, 6857
BstPAI GACNNNNGTC 1 cut(s) 4070
BstPI GGTNACC 1 cut(s) 4401
BstSLI GKGCMC 1 cut(s) 7933
BstUI CGCG 2 cut(s) 8631, 8727
BstV2I GAAGAC 2 cut(s) 3924, 6297
BstX2I RGATCY 7 cut(s) 91, 4260, 4432, 4600, 5533, 7498, 7741
BstXI CCANNNNNNTGG 4 cut(s) 269, 4398, 6382, 6402
BstYI RGATCY 7 cut(s) 91, 4260, 4432, 4600, 5533, 7498, 7741
Bsu15I ATCGAT 1 cut(s) 6566
BsuTUI ATCGAT 1 cut(s) 6566
BtgI CCRYGG 4 cut(s) 4372, 7230, 8285, 8568
BtgZI GCGATG 1 cut(s) 7078
BtsI GCAGTG 4 cut(s) 834, 2130, 3042, 7166
BtuMI TCGCGA 1 cut(s) 8631
BveI ACCTGC 2 cut(s) 5953, 7136
CaiI CAGNNNCTG 2 cut(s) 4802, 6617
CciI TCATGA 5 cut(s) 1260, 4990, 5913, 6430, 6966
CfoI GCGC 8 cut(s) 4013, 4093, 4821, 6180, 6932, 7322, 8466, 8727
ClaI ATCGAT 1 cut(s) 6566
CseI GACGC 2 cut(s) 776, 7451
CsiI ACCWGGT 1 cut(s) 8437
CspCI CAANNNNNGTGG 2 cut(s) 8697, 8732
DraI TTTAAA 5 cut(s) 3297, 4189, 4717, 5563, 5841
DraIII CACNNNGTG 1 cut(s) 6459
DriI GACNNNNNGTC 2 cut(s) 4839, 8176
EaeI YGGCCR 4 cut(s) 438, 1812, 5110, 6450
Eam1104I CTCTTC 9 cut(s) 1309, 2605, 3457, 3471, 3699, 4171, 4620, 5580, 6549
Eam1105I GACNNNNNGTC 2 cut(s) 4839, 8176
EarI CTCTTC 9 cut(s) 1309, 2605, 3457, 3471, 3699, 4171, 4620, 5580, 6549
EciI GGCGGA 1 cut(s) 4917
Ecl136II GAGCTC 1 cut(s) 8245
Eco130I CCWWGG 9 cut(s) 2465, 3933, 4372, 6762, 7135, 7230, 7988, 8285, 8568
Eco147I AGGCCT 4 cut(s) 2482, 5721, 7163, 8294
Eco24I GRGCYC 1 cut(s) 8247
Eco31I GGTCTC 2 cut(s) 4120, 7786
Eco32I GATATC 1 cut(s) 4288
Eco47III AGCGCT 1 cut(s) 4012
Eco53kI GAGCTC 1 cut(s) 8245
Eco88I CYCGRG 4 cut(s) 186, 1560, 6411, 8216
Eco91I GGTNACC 1 cut(s) 4401
EcoICRI GAGCTC 1 cut(s) 8245
EcoNI CCTNNNNNAGG 1 cut(s) 7139
EcoO109I RGGNCCY 3 cut(s) 890, 2186, 6055
EcoO65I GGTNACC 1 cut(s) 4401
EcoRI GAATTC 3 cut(s) 4501, 7900, 8077
EcoRV GATATC 1 cut(s) 4288
EcoT14I CCWWGG 9 cut(s) 2465, 3933, 4372, 6762, 7135, 7230, 7988, 8285, 8568
EcoT22I ATGCAT 2 cut(s) 3318, 5299
EcoT38I GRGCYC 1 cut(s) 8247
ErhI CCWWGG 9 cut(s) 2465, 3933, 4372, 6762, 7135, 7230, 7988, 8285, 8568
FaqI GGGAC 7 cut(s) 52, 437, 1808, 4280, 4683, 7025, 7703
FauI CCCGC 2 cut(s) 6721, 7002
FauNDI CATATG 2 cut(s) 268, 1642
FbaI TGATCA 2 cut(s) 3964, 8208
FblI GTMKAC 5 cut(s) 1382, 1452, 2678, 2748, 7560
FriOI GRGCYC 1 cut(s) 8247
FspI TGCGCA 1 cut(s) 6931
GlaI GCGC 8 cut(s) 4012, 4092, 4820, 6179, 6931, 7321, 8465, 8726
GsaI CCCAGC 2 cut(s) 265, 7102
GsuI CTGGAG 8 cut(s) 92, 716, 1017, 2313, 4301, 5859, 7611, 8431
HaeII RGCGCY 3 cut(s) 4014, 4094, 8467
HapII CCGG 6 cut(s) 354, 1728, 2779, 5317, 5347, 6510
HgaI GACGC 2 cut(s) 776, 7451
HhaI GCGC 8 cut(s) 4013, 4093, 4821, 6180, 6932, 7322, 8466, 8727
Hin1I GRCGYC 1 cut(s) 7443
Hin6I GCGC 8 cut(s) 4011, 4091, 4819, 6178, 6930, 7320, 8464, 8725
HinP1I GCGC 8 cut(s) 4011, 4091, 4819, 6178, 6930, 7320, 8464, 8725
HincII GTYRAC 3 cut(s) 2966, 3138, 5745
HindII GTYRAC 3 cut(s) 2966, 3138, 5745
HindIII AAGCTT 8 cut(s) 2832, 3250, 3650, 4109, 5228, 6984, 7868, 8267
HpaII CCGG 6 cut(s) 354, 1728, 2779, 5317, 5347, 6510
Hpy99I CGWCG 4 cut(s) 3897, 5472, 5997, 8174
HpyCH4IV ACGT 3 cut(s) 4245, 7302, 8563
HpyF10VI GCNNNNNNNGC 9 cut(s) 233, 833, 1607, 2129, 3242, 5294, 6346, 6617, 7094
HpySE526I ACGT 3 cut(s) 4245, 7302, 8563
Hsp92I GRCGYC 1 cut(s) 7443
HspAI GCGC 8 cut(s) 4011, 4091, 4819, 6178, 6930, 7320, 8464, 8725
Ksp22I TGATCA 2 cut(s) 3964, 8208
LguI GCTCTTC 1 cut(s) 4171
MabI ACCWGGT 1 cut(s) 8437
MaeII ACGT 3 cut(s) 4245, 7302, 8563
MbiI CCGCTC 1 cut(s) 6707
MflI RGATCY 7 cut(s) 91, 4260, 4432, 4600, 5533, 7498, 7741
MlsI TGGCCA 2 cut(s) 5112, 6452
MluNI TGGCCA 2 cut(s) 5112, 6452
Mox20I TGGCCA 2 cut(s) 5112, 6452
Mph1103I ATGCAT 2 cut(s) 3318, 5299
MscI TGGCCA 2 cut(s) 5112, 6452
MslI CAYNNNNRTG 7 cut(s) 858, 1412, 2154, 2708, 2859, 6380, 6441
Msp20I TGGCCA 2 cut(s) 5112, 6452
MspA1I CMGCKG 1 cut(s) 7312
MspI CCGG 6 cut(s) 354, 1728, 2779, 5317, 5347, 6510
MssI GTTTAAAC 1 cut(s) 5563
Mva1269I GAATGC 8 cut(s) 199, 853, 1313, 1573, 2149, 2609, 3318, 7510
MvnI CGCG 2 cut(s) 8631, 8727
MwoI GCNNNNNNNGC 9 cut(s) 233, 833, 1607, 2129, 3242, 5294, 6346, 6617, 7094
NciI CCSGG 4 cut(s) 354, 1728, 5318, 5348
NcoI CCATGG 4 cut(s) 4372, 7230, 8285, 8568
NdeI CATATG 2 cut(s) 268, 1642
NmuCI GTSAC 6 cut(s) 2218, 4401, 4469, 4831, 6476, 8572
NruI TCGCGA 1 cut(s) 8631
NsbI TGCGCA 1 cut(s) 6931
NsiI ATGCAT 2 cut(s) 3318, 5299
NspI RCATGY 9 cut(s) 607, 1978, 3173, 4874, 4899, 5301, 5572, 6026, 6857
PaeI GCATGC 3 cut(s) 3173, 6026, 6857
PagI TCATGA 5 cut(s) 1260, 4990, 5913, 6430, 6966
PaqCI CACCTGC 1 cut(s) 5953
PceI AGGCCT 4 cut(s) 2482, 5721, 7163, 8294
PciI ACATGT 4 cut(s) 603, 1974, 4870, 5568
PciSI GCTCTTC 1 cut(s) 4171
PctI GAATGC 8 cut(s) 199, 853, 1313, 1573, 2149, 2609, 3318, 7510
Pfl23II CGTACG 1 cut(s) 3730
PflFI GACNNNGTC 3 cut(s) 786, 3489, 3872
PflMI CCANNNNNTGG 4 cut(s) 1175, 2471, 4122, 8593
PfoI TCCNGGA 2 cut(s) 3366, 3415
Ple19I CGATCG 1 cut(s) 4676
PmeI GTTTAAAC 1 cut(s) 5563
PpuMI RGGWCCY 2 cut(s) 890, 2186
PscI ACATGT 4 cut(s) 603, 1974, 4870, 5568
PshAI GACNNNNGTC 1 cut(s) 4070
PshBI ATTAAT 1 cut(s) 6837
PsiI TTATAA 4 cut(s) 2627, 3446, 3719, 5153
Psp124BI GAGCTC 1 cut(s) 8247
Psp1406I AACGTT 1 cut(s) 7302
Psp5II RGGWCCY 2 cut(s) 890, 2186
PspEI GGTNACC 1 cut(s) 4401
PspFI CCCAGC 2 cut(s) 261, 7098
PspLI CGTACG 1 cut(s) 3730
PspPPI RGGWCCY 2 cut(s) 890, 2186
PsrI GAACNNNNNNTAC 4 cut(s) 4226, 4258, 6138, 6170
PstI CTGCAG 3 cut(s) 670, 4798, 6751
PstNI CAGNNNCTG 2 cut(s) 4802, 6617
PsuI RGATCY 7 cut(s) 91, 4260, 4432, 4600, 5533, 7498, 7741
PsyI GACNNNGTC 3 cut(s) 786, 3489, 3872
PvuI CGATCG 1 cut(s) 4676
PvuII CAGCTG 1 cut(s) 7312
RruI TCGCGA 1 cut(s) 8631
RseI CAYNNNNRTG 7 cut(s) 858, 1412, 2154, 2708, 2859, 6380, 6441
SacI GAGCTC 1 cut(s) 8247
SapI GCTCTTC 1 cut(s) 4171
SexAI ACCWGGT 1 cut(s) 8437
SmiMI CAYNNNNRTG 7 cut(s) 858, 1412, 2154, 2708, 2859, 6380, 6441
SphI GCATGC 3 cut(s) 3173, 6026, 6857
SseBI AGGCCT 4 cut(s) 2482, 5721, 7163, 8294
SspI AATATT 5 cut(s) 622, 2983, 3036, 6591, 7002
SstI GAGCTC 1 cut(s) 8247
StuI AGGCCT 4 cut(s) 2482, 5721, 7163, 8294
StyI CCWWGG 9 cut(s) 2465, 3933, 4372, 6762, 7135, 7230, 7988, 8285, 8568
TaiI ACGT 3 cut(s) 4248, 7305, 8566
TaqII GACCGA 1 cut(s) 144
TatI WGTACW 4 cut(s) 1421, 2717, 3543, 4203
TauI GCSGC 4 cut(s) 658, 665, 6710, 7088
TseFI GTSAC 6 cut(s) 2218, 4401, 4469, 4831, 6476, 8572
Tsp45I GTSAC 6 cut(s) 2218, 4401, 4469, 4831, 6476, 8572
TspGWI ACGGA 5 cut(s) 563, 1934, 3019, 5747, 7834
Tth111I GACNNNGTC 3 cut(s) 786, 3489, 3872
Van91I CCANNNNNTGG 4 cut(s) 1175, 2471, 4122, 8593
VspI ATTAAT 1 cut(s) 6837
XagI CCTNNNNNAGG 1 cut(s) 7139
XbaI TCTAGA 2 cut(s) 4381, 7529
XceI RCATGY 9 cut(s) 607, 1978, 3173, 4874, 4899, 5301, 5572, 6026, 6857
XcmI CCANNNNNNNNNTGG 2 cut(s) 1176, 2472
XmiI GTMKAC 5 cut(s) 1382, 1452, 2678, 2748, 7560
Zsp2I ATGCAT 2 cut(s) 3318, 5299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.