RchiOBHm_Chr4g0445931

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000223
Physical Location & Seq
Forward (+)
66260199 .. 66260720
522 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41347

Sequence Viewer

Length: 522 bp
ATGAATTTTTGTGGTGTGTCAATTGCAACCAGTAACTTGGAAGTTCCAATGATCTGGCCAGCCTCCTTGGATGTCATCCGATATAAGGATCTTTGCGTCACTAGTGATTCAGTGGATGACGTGTCTAAGGATGAAAGTTATGTTGAAAATTCAAAGGTCAGTGAGAGTTTGTTGCTGATGAAATTCTACTCCTTATCATCTGGGCTCATGAATCACTTGCTCTCTGACCTTCAGGGCAGAGAGTTGGTTCTCCCATTTGAAGTTACTGACGAAGAAATGGAGGCCATACTTTACAATAGAAGTACATTCATAGCTGGGCGATCAGGCACTGGGAAGACCACTGTTTTAACAATGAAGTTATTTCAGAAGGAACAGTATTACAATATGGCAGAGGAAGGATTGTATGCTGTCGAGCAGAGTTCTGGAGGTTTTAATGCAACTGTTTTACGTCAGATATTTGTAACAGTTAGTCCAGAACTCTGTATTGCCGTTAAGCAACATGTTTCAAACTTGAAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

173

Amino Acids

19.34

Weight (kDa)

4.85

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 56
AcsI RAATTY 3 cut(s) 4, 148, 182
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 1 cut(s) 85
AflIII ACRYGT 2 cut(s) 120, 499
AgsI TTSAA 5 cut(s) 146, 153, 260, 507, 514
AhlI ACTAGT 1 cut(s) 101
AjiI CACGTC 1 cut(s) 121
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
AlwI GGATC 1 cut(s) 96
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 2 cut(s) 56, 282
ApoI RAATTY 3 cut(s) 4, 148, 182
BalI TGGCCA 1 cut(s) 58
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 473
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 1 cut(s) 102
BmgBI CACGTC 1 cut(s) 121
BmrI ACTGGG 1 cut(s) 339
BmuI ACTGGG 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 2 cut(s) 30, 334
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 4 cut(s) 75, 76, 121, 136
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 30, 334
BseYI CCCAGC 1 cut(s) 314
BshFI GGCC 2 cut(s) 58, 284
BslI CCNNNNNNNGG 1 cut(s) 85
BsnI GGCC 2 cut(s) 58, 284
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 51, 88, 320
BspANI GGCC 2 cut(s) 58, 284
BspHI TCATGA 1 cut(s) 207
BspPI GGATC 1 cut(s) 96
BsrI ACTGG 2 cut(s) 30, 334
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 3 cut(s) 51, 88, 320
BssT1I CCWWGG 1 cut(s) 66
Bst4CI ACNGT 4 cut(s) 343, 375, 442, 466
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 4 cut(s) 75, 76, 121, 136
BstKTI GATC 3 cut(s) 54, 91, 323
BstMBI GATC 3 cut(s) 51, 88, 320
BstNSI RCATGY 1 cut(s) 503
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 88
BstXI CCANNNNNNTGG 2 cut(s) 37, 54
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 2 cut(s) 58, 284
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 4 cut(s) 75, 76, 121, 136
BtsIMutI CAGTG 4 cut(s) 117, 166, 327, 339
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 1 cut(s) 329
CciI TCATGA 1 cut(s) 207
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 303
CviAII CATG 2 cut(s) 208, 500
CviJI RGCY 5 cut(s) 58, 62, 205, 284, 314
CviKI_1 RGCY 5 cut(s) 58, 62, 205, 284, 314
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 1 cut(s) 126
DpnI GATC 3 cut(s) 53, 90, 322
DpnII GATC 3 cut(s) 51, 88, 320
EaeI YGGCCR 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 2 cut(s) 211, 503
FaiI YATR 8 cut(s) 84, 141, 209, 287, 311, 386, 405, 501
FatI CATG 2 cut(s) 207, 499
FokI GGATG 4 cut(s) 62, 83, 128, 143
FriOI GRGCYC 1 cut(s) 207
FspBI CTAG 1 cut(s) 102
GsaI CCCAGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 2 cut(s) 58, 284
HgaI GACGC 1 cut(s) 85
Hin1II CATG 2 cut(s) 211, 503
HinfI GANTC 2 cut(s) 107, 211
Hpy188I TCNGA 4 cut(s) 80, 226, 366, 453
Hpy188III TCNNGA 3 cut(s) 208, 423, 473
HpyAV CCTTC 3 cut(s) 239, 361, 389
HpyCH4III ACNGT 4 cut(s) 343, 375, 442, 466
HpyCH4IV ACGT 2 cut(s) 120, 448
HpyCH4V TGCA 2 cut(s) 26, 437
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 2 cut(s) 120, 448
Hsp92II CATG 2 cut(s) 211, 503
Kzo9I GATC 3 cut(s) 51, 88, 320
MaeI CTAG 1 cut(s) 102
MaeII ACGT 2 cut(s) 120, 448
MaeIII GTNAC 4 cut(s) 32, 97, 262, 460
MalI GATC 3 cut(s) 53, 90, 322
MboI GATC 3 cut(s) 51, 88, 320
MboII GAAGA 2 cut(s) 284, 346
MfeI CAATTG 1 cut(s) 21
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 58
MluCI AATT 4 cut(s) 4, 21, 148, 182
MluNI TGGCCA 1 cut(s) 58
MnlI CCTC 4 cut(s) 73, 274, 385, 419
Mox20I TGGCCA 1 cut(s) 58
MscI TGGCCA 1 cut(s) 58
MseI TTAA 3 cut(s) 347, 432, 492
Msp20I TGGCCA 1 cut(s) 58
MunI CAATTG 1 cut(s) 21
NdeII GATC 3 cut(s) 51, 88, 320
NlaIII CATG 2 cut(s) 211, 503
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 1 cut(s) 503
PagI TCATGA 1 cut(s) 207
PciI ACATGT 1 cut(s) 499
PfeI GAWTC 2 cut(s) 107, 211
PscI ACATGT 1 cut(s) 499
PspFI CCCAGC 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SaqAI TTAA 3 cut(s) 347, 432, 492
Sau3AI GATC 3 cut(s) 51, 88, 320
SduI GDGCHC 1 cut(s) 207
SetI ASST 7 cut(s) 123, 159, 231, 316, 430, 451, 521
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 4 cut(s) 4, 21, 148, 182
SspMI CTAG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 4 cut(s) 343, 375, 442, 466
TaiI ACGT 2 cut(s) 123, 451
TaqI TCGA 1 cut(s) 411
TasI AATT 4 cut(s) 4, 21, 148, 182
TatI WGTACW 1 cut(s) 302
TfiI GAWTC 2 cut(s) 107, 211
Tru1I TTAA 3 cut(s) 347, 432, 492
Tru9I TTAA 3 cut(s) 347, 432, 492
TscAI CASTG 4 cut(s) 117, 166, 334, 346
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 6 cut(s) 17, 147, 194, 224, 298, 368
TspRI CASTG 4 cut(s) 117, 166, 334, 346
XapI RAATTY 3 cut(s) 4, 148, 182
XceI RCATGY 1 cut(s) 503
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.