TPR and ankyrin repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF6469 | PF20073 | 78 - 206 | 4.2e-64 | Domain of unknown function (DUF6469) |
| AAA_11 | PF13086 | 244 - 616 | 1.6e-33 | AAA domain |
| AAA_19 | PF13245 | 264 - 612 | 1.3e-06 | AAA domain |
| AAA_12 | PF13087 | 625 - 821 | 9.1e-57 | AAA domain |
| AAA_19 | PF13245 | 1090 - 1421 | 7.8e-06 | AAA domain |
| UvrD-helicase | PF00580 | 1092 - 1418 | 2.3e-06 | UvrD/REP helicase N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3782 |
| AarI | CACCTGC | 1 cut(s) | 5102 |
| AatII | GACGTC | 1 cut(s) | 2699 |
| Acc36I | ACCTGC | 6 cut(s) | 187, 770, 1856, 4591, 5102, 5774 |
| AccB1I | GGYRCC | 1 cut(s) | 3360 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1100, 2751, 3259 |
| AccI | GTMKAC | 1 cut(s) | 2626 |
| AccII | CGCG | 1 cut(s) | 5348 |
| AclWI | GGATC | 8 cut(s) | 1987, 2358, 2562, 3069, 3237, 3967, 4134, 5595 |
| AcoI | YGGCCR | 5 cut(s) | 3029, 3827, 4881, 5088, 7728 |
| AcvI | CACGTG | 1 cut(s) | 5051 |
| AcyI | GRCGYC | 1 cut(s) | 2696 |
| AdeI | CACNNNGTG | 1 cut(s) | 5097 |
| AfaI | GTAC | 9 cut(s) | 481, 826, 1464, 2361, 2721, 2845, 5471, 5826, 7588 |
| AflIII | ACRYGT | 4 cut(s) | 603, 3104, 3496, 6693 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 7042 |
| AhlI | ACTAGT | 1 cut(s) | 3389 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3597, 3629, 4298, 4330 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5170, 5202 |
| Alw21I | GWGCWC | 5 cut(s) | 232, 644, 4630, 5572, 7519 |
| Alw44I | GTGCAC | 3 cut(s) | 640, 5568, 7515 |
| AlwI | GGATC | 8 cut(s) | 1987, 2358, 2562, 3069, 3237, 3967, 4134, 5595 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 752, 2751, 3311, 3425, 3428, 5255 |
| Ama87I | CYCGRG | 2 cut(s) | 155, 6854 |
| ApaLI | GTGCAC | 3 cut(s) | 640, 5568, 7515 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 5897, 5929 |
| AseI | ATTAAT | 3 cut(s) | 2412, 2976, 7233 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 120, 132, 996, 2466, 3535, 4374, 7077 |
| AspA2I | CCTAGG | 1 cut(s) | 6626 |
| AspLEI | GCGC | 1 cut(s) | 196 |
| AsuC2I | CCSGG | 1 cut(s) | 6799 |
| AvaI | CYCGRG | 2 cut(s) | 155, 6854 |
| AvrII | CCTAGG | 1 cut(s) | 6626 |
| AxyI | CCTNAGG | 3 cut(s) | 5034, 7445, 7472 |
| BaeGI | GKGCMC | 4 cut(s) | 644, 901, 5572, 7519 |
| BalI | TGGCCA | 2 cut(s) | 3031, 5090 |
| BanI | GGYRCC | 1 cut(s) | 3360 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4074, 4106 |
| BauI | CACGAG | 3 cut(s) | 933, 4894, 6360 |
| BbrPI | CACGTG | 1 cut(s) | 5051 |
| BbsI | GAAGAC | 3 cut(s) | 1476, 2553, 6397 |
| Bbv12I | GWGCWC | 5 cut(s) | 232, 644, 4630, 5572, 7519 |
| BbvCI | CCTCAGC | 1 cut(s) | 3429 |
| BceAI | ACGGC | 5 cut(s) | 1699, 2483, 4868, 6799, 7743 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 6866, 6900 |
| BciVI | GTATCC | 2 cut(s) | 180, 7369 |
| BclI | TGATCA | 1 cut(s) | 6846 |
| BcnI | CCSGG | 1 cut(s) | 6799 |
| BcuI | ACTAGT | 1 cut(s) | 3389 |
| BfmI | CTRYAG | 7 cut(s) | 1836, 2907, 3918, 5238, 6650, 7524, 7629 |
| BfuAI | ACCTGC | 6 cut(s) | 187, 770, 1856, 4591, 5102, 5774 |
| BfuI | GTATCC | 2 cut(s) | 180, 7369 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 5900 |
| BglII | AGATCT | 1 cut(s) | 4162 |
| BlnI | CCTAGG | 1 cut(s) | 6626 |
| BlpI | GCTNAGC | 2 cut(s) | 6888, 7413 |
| BmcAI | AGTACT | 2 cut(s) | 481, 1464 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 7042 |
| BmeT110I | CYCGRG | 2 cut(s) | 155, 6854 |
| BmiI | GGNNCC | 6 cut(s) | 71, 816, 1200, 1713, 2321, 3362 |
| BmrI | ACTGGG | 4 cut(s) | 3321, 4581, 5134, 5468 |
| BmuI | ACTGGG | 4 cut(s) | 3321, 4581, 5134, 5468 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2699 |
| BpiI | GAAGAC | 3 cut(s) | 1476, 2553, 6397 |
| BpmI | CTGGAG | 3 cut(s) | 1126, 2773, 6249 |
| Bpu10I | CCTNAGC | 5 cut(s) | 1087, 3429, 3471, 5400, 6304 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 6888, 7413 |
| BpuMI | CCSGG | 1 cut(s) | 6799 |
| Bsa29I | ATCGAT | 2 cut(s) | 4266, 7195 |
| BsaAI | YACGTR | 3 cut(s) | 5051, 5824, 6235 |
| BsaBI | GATNNNNATC | 2 cut(s) | 6084, 6333 |
| BsaHI | GRCGYC | 1 cut(s) | 2696 |
| BsaI | GGTCTC | 2 cut(s) | 2749, 6424 |
| BsaWI | WCCGGW | 2 cut(s) | 4232, 4513 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1368, 1398, 5030, 5060 |
| Bse21I | CCTNAGG | 3 cut(s) | 5034, 7445, 7472 |
| Bse3DI | GCAATG | 5 cut(s) | 1111, 1713, 2524, 2853, 6849 |
| Bse8I | GATNNNNATC | 2 cut(s) | 6084, 6333 |
| BseCI | ATCGAT | 2 cut(s) | 4266, 7195 |
| BseJI | GATNNNNATC | 2 cut(s) | 6084, 6333 |
| BseMI | GCAATG | 5 cut(s) | 1111, 1713, 2524, 2853, 6849 |
| BseRI | GAGGAG | 5 cut(s) | 3446, 5051, 6344, 7414, 7498 |
| BseSI | GKGCMC | 4 cut(s) | 644, 901, 5572, 7519 |
| BsgI | GTGCAG | 3 cut(s) | 1728, 4227, 4614 |
| Bsh1236I | CGCG | 1 cut(s) | 5348 |
| BshNI | GGYRCC | 1 cut(s) | 3360 |
| BshVI | ATCGAT | 2 cut(s) | 4266, 7195 |
| BsiHKAI | GWGCWC | 5 cut(s) | 232, 644, 4630, 5572, 7519 |
| BsiHKCI | CYCGRG | 2 cut(s) | 155, 6854 |
| BsiSI | CCGG | 3 cut(s) | 4233, 4514, 6799 |
| BslFI | GGGAC | 6 cut(s) | 55, 763, 2903, 2909, 5663, 6871 |
| BsmBI | CGTCTC | 2 cut(s) | 101, 1070 |
| BsmFI | GGGAC | 6 cut(s) | 55, 763, 2903, 2909, 5663, 6871 |
| BsmI | GAATGC | 5 cut(s) | 1559, 5547, 6275, 6772, 7624 |
| Bso31I | GGTCTC | 2 cut(s) | 2749, 6424 |
| BsoBI | CYCGRG | 2 cut(s) | 155, 6854 |
| Bsp1286I | GDGCHC | 6 cut(s) | 232, 644, 901, 4630, 5572, 7519 |
| Bsp1407I | TGTACA | 2 cut(s) | 2843, 7586 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 6888, 7413 |
| BspDI | ATCGAT | 2 cut(s) | 4266, 7195 |
| BspFNI | CGCG | 1 cut(s) | 5348 |
| BspHI | TCATGA | 7 cut(s) | 658, 1539, 3616, 5068, 5944, 6325, 7462 |
| BspLI | GGNNCC | 6 cut(s) | 71, 816, 1200, 1713, 2321, 3362 |
| BspMAI | CTGCAG | 2 cut(s) | 7528, 7633 |
| BspMI | ACCTGC | 6 cut(s) | 187, 770, 1856, 4591, 5102, 5774 |
| BspPI | GGATC | 8 cut(s) | 1987, 2358, 2562, 3069, 3237, 3967, 4134, 5595 |
| BspQI | GCTCTTC | 3 cut(s) | 1838, 2800, 4923 |
| BspT107I | GGYRCC | 1 cut(s) | 3360 |
| BspTNI | GGTCTC | 2 cut(s) | 2749, 6424 |
| BsrDI | GCAATG | 5 cut(s) | 1111, 1713, 2524, 2853, 6849 |
| BsrGI | TGTACA | 2 cut(s) | 2843, 7586 |
| BssNAI | GTATAC | 1 cut(s) | 2627 |
| BssNI | GRCGYC | 1 cut(s) | 2696 |
| BssSI | CACGAG | 3 cut(s) | 933, 4894, 6360 |
| BssT1I | CCWWGG | 3 cut(s) | 2562, 5773, 6626 |
| Bst1107I | GTATAC | 1 cut(s) | 2627 |
| Bst2BI | CACGAG | 3 cut(s) | 933, 4894, 6360 |
| BstACI | GRCGYC | 1 cut(s) | 2696 |
| BstAPI | GCANNNNNTGC | 6 cut(s) | 236, 1871, 5165, 5255, 7523, 7628 |
| BstAUI | TGTACA | 2 cut(s) | 2843, 7586 |
| BstBAI | YACGTR | 3 cut(s) | 5051, 5824, 6235 |
| BstDSI | CCRYGG | 4 cut(s) | 328, 1094, 2499, 5346 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 5777 |
| BstFNI | CGCG | 1 cut(s) | 5348 |
| BstHHI | GCGC | 1 cut(s) | 196 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2699 |
| BstSFI | CTRYAG | 7 cut(s) | 1836, 2907, 3918, 5238, 6650, 7524, 7629 |
| BstSLI | GKGCMC | 4 cut(s) | 644, 901, 5572, 7519 |
| BstSNI | TACGTA | 1 cut(s) | 5824 |
| BstUI | CGCG | 1 cut(s) | 5348 |
| BstV2I | GAAGAC | 3 cut(s) | 1476, 2553, 6397 |
| BstX2I | RGATCY | 6 cut(s) | 2554, 3061, 3229, 3972, 4162, 5600 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 46, 3027 |
| BstYI | RGATCY | 6 cut(s) | 2554, 3061, 3229, 3972, 4162, 5600 |
| BstZ17I | GTATAC | 1 cut(s) | 2627 |
| Bsu15I | ATCGAT | 2 cut(s) | 4266, 7195 |
| Bsu36I | CCTNAGG | 3 cut(s) | 5034, 7445, 7472 |
| BsuI | GTATCC | 2 cut(s) | 180, 7369 |
| BsuTUI | ATCGAT | 2 cut(s) | 4266, 7195 |
| BtgI | CCRYGG | 4 cut(s) | 328, 1094, 2499, 5346 |
| BtgZI | GCGATG | 2 cut(s) | 5716, 6265 |
| BtsI | GCAGTG | 5 cut(s) | 1671, 3378, 4239, 5505, 6600 |
| BveI | ACCTGC | 6 cut(s) | 187, 770, 1856, 4591, 5102, 5774 |
| CaiI | CAGNNNCTG | 6 cut(s) | 752, 2751, 3311, 3425, 3428, 5255 |
| CciI | TCATGA | 7 cut(s) | 658, 1539, 3616, 5068, 5944, 6325, 7462 |
| CfoI | GCGC | 1 cut(s) | 196 |
| Cfr42I | CCGCGG | 1 cut(s) | 5349 |
| ClaI | ATCGAT | 2 cut(s) | 4266, 7195 |
| CsiI | ACCWGGT | 1 cut(s) | 7048 |
| Csp6I | GTAC | 9 cut(s) | 480, 825, 1463, 2360, 2720, 2844, 5470, 5825, 7587 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3021, 3056 |
| CviQI | GTAC | 9 cut(s) | 480, 825, 1463, 2360, 2720, 2844, 5470, 5825, 7587 |
| DraI | TTTAAA | 3 cut(s) | 496, 4192, 6762 |
| DraIII | CACNNNGTG | 1 cut(s) | 5097 |
| DriI | GACNNNNNGTC | 1 cut(s) | 7042 |
| EaeI | YGGCCR | 5 cut(s) | 3029, 3827, 4881, 5088, 7728 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 7042 |
| Eco105I | TACGTA | 1 cut(s) | 5824 |
| Eco130I | CCWWGG | 3 cut(s) | 2562, 5773, 6626 |
| Eco31I | GGTCTC | 2 cut(s) | 2749, 6424 |
| Eco32I | GATATC | 4 cut(s) | 292, 3601, 4641, 7149 |
| Eco72I | CACGTG | 1 cut(s) | 5051 |
| Eco81I | CCTNAGG | 3 cut(s) | 5034, 7445, 7472 |
| Eco88I | CYCGRG | 2 cut(s) | 155, 6854 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 5777 |
| EcoO109I | RGGNCCY | 4 cut(s) | 815, 4693, 5893, 6927 |
| EcoRI | GAATTC | 4 cut(s) | 3130, 3751, 6019, 6538 |
| EcoRV | GATATC | 4 cut(s) | 292, 3601, 4641, 7149 |
| EcoT14I | CCWWGG | 3 cut(s) | 2562, 5773, 6626 |
| EcoT22I | ATGCAT | 3 cut(s) | 1315, 1947, 4110 |
| ErhI | CCWWGG | 3 cut(s) | 2562, 5773, 6626 |
| Esp3I | CGTCTC | 2 cut(s) | 101, 1070 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 5742, 5774, 7203, 7235 |
| FaqI | GGGAC | 6 cut(s) | 55, 763, 2903, 2909, 5663, 6871 |
| FauI | CCCGC | 2 cut(s) | 5640, 7671 |
| FauNDI | CATATG | 7 cut(s) | 271, 343, 1502, 1513, 2227, 4131, 4197 |
| FbaI | TGATCA | 1 cut(s) | 6846 |
| FblI | GTMKAC | 1 cut(s) | 2626 |
| GlaI | GCGC | 1 cut(s) | 195 |
| GsuI | CTGGAG | 3 cut(s) | 1126, 2773, 6249 |
| HapII | CCGG | 3 cut(s) | 4233, 4514, 6799 |
| HhaI | GCGC | 1 cut(s) | 196 |
| Hin1I | GRCGYC | 1 cut(s) | 2696 |
| Hin6I | GCGC | 1 cut(s) | 194 |
| HinP1I | GCGC | 1 cut(s) | 194 |
| HincII | GTYRAC | 6 cut(s) | 951, 1185, 1595, 2314, 7018, 7438 |
| HindII | GTYRAC | 6 cut(s) | 951, 1185, 1595, 2314, 7018, 7438 |
| HindIII | AAGCTT | 5 cut(s) | 594, 2738, 5622, 6506, 6890 |
| HpaI | GTTAAC | 1 cut(s) | 1185 |
| HpaII | CCGG | 3 cut(s) | 4233, 4514, 6799 |
| HpyCH4IV | ACGT | 8 cut(s) | 94, 2079, 2116, 2696, 5050, 5180, 5823, 6234 |
| HpySE526I | ACGT | 8 cut(s) | 94, 2079, 2116, 2696, 5050, 5180, 5823, 6234 |
| Hsp92I | GRCGYC | 1 cut(s) | 2696 |
| HspAI | GCGC | 1 cut(s) | 194 |
| Ksp22I | TGATCA | 1 cut(s) | 6846 |
| KspAI | GTTAAC | 1 cut(s) | 1185 |
| KspI | CCGCGG | 1 cut(s) | 5349 |
| LguI | GCTCTTC | 3 cut(s) | 1838, 2800, 4923 |
| LmnI | GCTCC | 8 cut(s) | 145, 1015, 1711, 2008, 3914, 4516, 6357, 7401 |
| MabI | ACCWGGT | 1 cut(s) | 7048 |
| MaeII | ACGT | 8 cut(s) | 94, 2079, 2116, 2696, 5050, 5180, 5823, 6234 |
| MfeI | CAATTG | 5 cut(s) | 843, 1748, 2247, 4251, 6014 |
| MflI | RGATCY | 6 cut(s) | 2554, 3061, 3229, 3972, 4162, 5600 |
| MhlI | GDGCHC | 6 cut(s) | 232, 644, 901, 4630, 5572, 7519 |
| MlsI | TGGCCA | 2 cut(s) | 3031, 5090 |
| MluNI | TGGCCA | 2 cut(s) | 3031, 5090 |
| MmeI | TCCRAC | 6 cut(s) | 3044, 3277, 4296, 4564, 5673, 6466 |
| Mox20I | TGGCCA | 2 cut(s) | 3031, 5090 |
| Mph1103I | ATGCAT | 3 cut(s) | 1315, 1947, 4110 |
| MroXI | GAANNNNTTC | 7 cut(s) | 120, 132, 996, 2466, 3535, 4374, 7077 |
| MscI | TGGCCA | 2 cut(s) | 3031, 5090 |
| MslI | CAYNNNNRTG | 5 cut(s) | 783, 1352, 5510, 5580, 6237 |
| Msp20I | TGGCCA | 2 cut(s) | 3031, 5090 |
| MspA1I | CMGCKG | 6 cut(s) | 2377, 3425, 3764, 5147, 5348, 6449 |
| MspI | CCGG | 3 cut(s) | 4233, 4514, 6799 |
| MssI | GTTTAAAC | 1 cut(s) | 4192 |
| MunI | CAATTG | 5 cut(s) | 843, 1748, 2247, 4251, 6014 |
| Mva1269I | GAATGC | 5 cut(s) | 1559, 5547, 6275, 6772, 7624 |
| MvnI | CGCG | 1 cut(s) | 5348 |
| NciI | CCSGG | 1 cut(s) | 6799 |
| NdeI | CATATG | 7 cut(s) | 271, 343, 1502, 1513, 2227, 4131, 4197 |
| NlaIV | GGNNCC | 6 cut(s) | 71, 816, 1200, 1713, 2321, 3362 |
| NmeAIII | GCCGAG | 1 cut(s) | 1105 |
| NmuCI | GTSAC | 9 cut(s) | 442, 1241, 2379, 4235, 5046, 5114, 5913, 7044, 7427 |
| NsiI | ATGCAT | 3 cut(s) | 1315, 1947, 4110 |
| PaeI | GCATGC | 3 cut(s) | 1802, 4664, 5495 |
| PagI | TCATGA | 7 cut(s) | 658, 1539, 3616, 5068, 5944, 6325, 7462 |
| PaqCI | CACCTGC | 1 cut(s) | 5102 |
| PasI | CCCWGGG | 1 cut(s) | 4812 |
| PciI | ACATGT | 4 cut(s) | 603, 3104, 3496, 6693 |
| PciSI | GCTCTTC | 3 cut(s) | 1838, 2800, 4923 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2941 |
| PctI | GAATGC | 5 cut(s) | 1559, 5547, 6275, 6772, 7624 |
| PdmI | GAANNNNTTC | 7 cut(s) | 120, 132, 996, 2466, 3535, 4374, 7077 |
| PflFI | GACNNNGTC | 1 cut(s) | 2118 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1100, 2751, 3259 |
| PfoI | TCCNGGA | 1 cut(s) | 1995 |
| PmaCI | CACGTG | 1 cut(s) | 5051 |
| PmeI | GTTTAAAC | 1 cut(s) | 4192 |
| PmlI | CACGTG | 1 cut(s) | 5051 |
| Ppu21I | YACGTR | 3 cut(s) | 5051, 5824, 6235 |
| PpuMI | RGGWCCY | 1 cut(s) | 815 |
| PscI | ACATGT | 4 cut(s) | 603, 3104, 3496, 6693 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2699 |
| PshBI | ATTAAT | 3 cut(s) | 2412, 2976, 7233 |
| PsiI | TTATAA | 1 cut(s) | 3782 |
| Psp5II | RGGWCCY | 1 cut(s) | 815 |
| PspCI | CACGTG | 1 cut(s) | 5051 |
| PspN4I | GGNNCC | 6 cut(s) | 71, 816, 1200, 1713, 2321, 3362 |
| PspPPI | RGGWCCY | 1 cut(s) | 815 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2712, 2744, 4776, 4808 |
| PstI | CTGCAG | 2 cut(s) | 7528, 7633 |
| PstNI | CAGNNNCTG | 6 cut(s) | 752, 2751, 3311, 3425, 3428, 5255 |
| PsuI | RGATCY | 6 cut(s) | 2554, 3061, 3229, 3972, 4162, 5600 |
| PsyI | GACNNNGTC | 1 cut(s) | 2118 |
| PvuII | CAGCTG | 4 cut(s) | 3425, 3764, 5147, 6449 |
| RsaI | GTAC | 9 cut(s) | 481, 826, 1464, 2361, 2721, 2845, 5471, 5826, 7588 |
| RsaNI | GTAC | 9 cut(s) | 480, 825, 1463, 2360, 2720, 2844, 5470, 5825, 7587 |
| RseI | CAYNNNNRTG | 5 cut(s) | 783, 1352, 5510, 5580, 6237 |
| SacII | CCGCGG | 1 cut(s) | 5349 |
| SapI | GCTCTTC | 3 cut(s) | 1838, 2800, 4923 |
| ScaI | AGTACT | 2 cut(s) | 481, 1464 |
| SduI | GDGCHC | 6 cut(s) | 232, 644, 901, 4630, 5572, 7519 |
| SexAI | ACCWGGT | 1 cut(s) | 7048 |
| SfcI | CTRYAG | 7 cut(s) | 1836, 2907, 3918, 5238, 6650, 7524, 7629 |
| Sfr303I | CCGCGG | 1 cut(s) | 5349 |
| SgrBI | CCGCGG | 1 cut(s) | 5349 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 783, 1352, 5510, 5580, 6237 |
| SnaBI | TACGTA | 1 cut(s) | 5824 |
| SpeI | ACTAGT | 1 cut(s) | 3389 |
| SphI | GCATGC | 3 cut(s) | 1802, 4664, 5495 |
| SspI | AATATT | 3 cut(s) | 5229, 5817, 6461 |
| StyI | CCWWGG | 3 cut(s) | 2562, 5773, 6626 |
| TaiI | ACGT | 8 cut(s) | 97, 2082, 2119, 2699, 5053, 5183, 5826, 6237 |
| TatI | WGTACW | 5 cut(s) | 479, 1462, 2843, 5469, 7586 |
| TauI | GCSGC | 4 cut(s) | 3832, 5348, 5804, 7170 |
| TseFI | GTSAC | 9 cut(s) | 442, 1241, 2379, 4235, 5046, 5114, 5913, 7044, 7427 |
| Tsp45I | GTSAC | 9 cut(s) | 442, 1241, 2379, 4235, 5046, 5114, 5913, 7044, 7427 |
| TspGWI | ACGGA | 5 cut(s) | 1111, 2693, 3263, 3763, 6989 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2118 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1100, 2751, 3259 |
| VneI | GTGCAC | 3 cut(s) | 640, 5568, 7515 |
| VspI | ATTAAT | 3 cut(s) | 2412, 2976, 7233 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 5777 |
| XbaI | TCTAGA | 2 cut(s) | 1054, 1973 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 1101, 1782, 2569, 3902, 6190 |
| XmaJI | CCTAGG | 1 cut(s) | 6626 |
| XmiI | GTMKAC | 1 cut(s) | 2626 |
| XmnI | GAANNNNTTC | 7 cut(s) | 120, 132, 996, 2466, 3535, 4374, 7077 |
| ZraI | GACGTC | 1 cut(s) | 2697 |
| ZrmI | AGTACT | 2 cut(s) | 481, 1464 |
| Zsp2I | ATGCAT | 3 cut(s) | 1315, 1947, 4110 |