TPR and ankyrin repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1509, 1586 |
| AarI | CACCTGC | 2 cut(s) | 1847, 4218 |
| AatII | GACGTC | 1 cut(s) | 498 |
| Acc36I | ACCTGC | 4 cut(s) | 1847, 2521, 3218, 4218 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 705, 883, 2429 |
| AccI | GTMKAC | 1 cut(s) | 4014 |
| AccII | CGCG | 1 cut(s) | 2980 |
| AciI | CCGC | 3 cut(s) | 251, 2323, 3278 |
| AclWI | GGATC | 5 cut(s) | 339, 1026, 1542, 2100, 3041 |
| AcoI | YGGCCR | 3 cut(s) | 986, 3018, 4489 |
| AcuI | CTGAAG | 5 cut(s) | 1458, 2816, 4125, 4304, 4359 |
| AcyI | GRCGYC | 2 cut(s) | 495, 3486 |
| AdeI | CACNNNGTG | 1 cut(s) | 2333 |
| AfeI | AGCGCT | 2 cut(s) | 3302, 4188 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 705, 883, 1015, 1905, 2429, 3141, 3495, 4657 |
| AflII | CTTAAG | 1 cut(s) | 689 |
| AflIII | ACRYGT | 3 cut(s) | 582, 1050, 1429 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4063 |
| AhlI | ACTAGT | 1 cut(s) | 1031 |
| AjiI | CACGTC | 1 cut(s) | 1051 |
| AjnI | CCWGG | 4 cut(s) | 325, 2634, 3424, 3972 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3014, 3046, 4250, 4282 |
| AleI | CACNNNNGTG | 1 cut(s) | 3249 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4286, 4318 |
| Alw21I | GWGCWC | 3 cut(s) | 178, 214, 590 |
| Alw26I | GTCTC | 6 cut(s) | 907, 2316, 2867, 3086, 3948, 4268 |
| Alw44I | GTGCAC | 1 cut(s) | 586 |
| AlwI | GGATC | 5 cut(s) | 339, 1026, 1542, 2100, 3041 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1259, 3350, 4612 |
| Ama87I | CYCGRG | 2 cut(s) | 171, 2627 |
| Aor51HI | AGCGCT | 2 cut(s) | 3302, 4188 |
| ApaLI | GTGCAC | 1 cut(s) | 586 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 890, 922, 3388, 3420, 4216, 4248 |
| AseI | ATTAAT | 1 cut(s) | 2064 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 111, 748, 767, 3324, 4598 |
| AspLEI | GCGC | 2 cut(s) | 3303, 4189 |
| AspS9I | GGNCC | 2 cut(s) | 51, 2173 |
| AsuC2I | CCSGG | 1 cut(s) | 1907 |
| AvaI | CYCGRG | 2 cut(s) | 171, 2627 |
| AvaII | GGWCC | 1 cut(s) | 51 |
| BaeGI | GKGCMC | 1 cut(s) | 590 |
| BalI | TGGCCA | 3 cut(s) | 988, 3020, 4491 |
| BanII | GRGCYC | 2 cut(s) | 178, 2628 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 733, 765 |
| BauI | CACGAG | 1 cut(s) | 589 |
| BbsI | GAAGAC | 4 cut(s) | 9, 1271, 1982, 3417 |
| Bbv12I | GWGCWC | 3 cut(s) | 178, 214, 590 |
| BccI | CCATC | 9 cut(s) | 187, 443, 594, 917, 1427, 1610, 1856, 3169, 4712 |
| BceAI | ACGGC | 2 cut(s) | 2187, 2234 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2608, 2642 |
| BciT130I | CCWGG | 4 cut(s) | 327, 2636, 3426, 3974 |
| BciVI | GTATCC | 2 cut(s) | 884, 4411 |
| BclI | TGATCA | 1 cut(s) | 2475 |
| BcnI | CCSGG | 1 cut(s) | 1907 |
| BcoDI | GTCTC | 6 cut(s) | 907, 2316, 2867, 3086, 3948, 4268 |
| BcuI | ACTAGT | 1 cut(s) | 1031 |
| BfaI | CTAG | 7 cut(s) | 321, 597, 1032, 2457, 3293, 3458, 3747 |
| BfmI | CTRYAG | 3 cut(s) | 3315, 3843, 4313 |
| BfoI | RGCGCY | 2 cut(s) | 3304, 4190 |
| BfrI | CTTAAG | 1 cut(s) | 689 |
| BfuAI | ACCTGC | 4 cut(s) | 1847, 2521, 3218, 4218 |
| BfuI | GTATCC | 2 cut(s) | 884, 4411 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1675 |
| BlpI | GCTNAGC | 1 cut(s) | 2526 |
| Bme1390I | CCNGG | 5 cut(s) | 327, 1907, 2636, 3426, 3974 |
| Bme18I | GGWCC | 1 cut(s) | 51 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4063 |
| BmeT110I | CYCGRG | 2 cut(s) | 171, 2627 |
| BmgBI | CACGTC | 1 cut(s) | 1051 |
| BmgT120I | GGNCC | 2 cut(s) | 51, 2173 |
| BmiI | GGNNCC | 2 cut(s) | 53, 2033 |
| BmrFI | CCNGG | 5 cut(s) | 327, 1907, 2636, 3426, 3974 |
| BmrI | ACTGGG | 2 cut(s) | 1269, 3064 |
| BmuI | ACTGGG | 2 cut(s) | 1269, 3064 |
| BpiI | GAAGAC | 4 cut(s) | 9, 1271, 1982, 3417 |
| BpmI | CTGGAG | 4 cut(s) | 1374, 2424, 3647, 4708 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4289 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2526 |
| BpuEI | CTTGAG | 4 cut(s) | 614, 1462, 1819, 3656 |
| BpuMI | CCSGG | 1 cut(s) | 1907 |
| Bsa29I | ATCGAT | 1 cut(s) | 2079 |
| BsaAI | YACGTR | 1 cut(s) | 2822 |
| BsaHI | GRCGYC | 2 cut(s) | 495, 3486 |
| BsaI | GGTCTC | 1 cut(s) | 2867 |
| BsaJI | CCNNGG | 4 cut(s) | 326, 996, 3973, 4811 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 283, 313 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 705, 883, 1015, 1905, 2429, 3141, 3495, 4657 |
| Bse118I | RCCGGY | 1 cut(s) | 3074 |
| Bse3DI | GCAATG | 3 cut(s) | 191, 2266, 4515 |
| BseBI | CCWGG | 4 cut(s) | 327, 2636, 3426, 3974 |
| BseCI | ATCGAT | 1 cut(s) | 2079 |
| BseDI | CCNNGG | 4 cut(s) | 326, 996, 3973, 4811 |
| BseGI | GGATG | 9 cut(s) | 198, 1006, 1051, 1507, 1621, 2644, 3180, 3470, 3775 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 705, 883, 1015, 1905, 2429, 3141, 3495, 4657 |
| BseMI | GCAATG | 3 cut(s) | 191, 2266, 4515 |
| BseMII | CTCAG | 6 cut(s) | 691, 1557, 1885, 2333, 2517, 4781 |
| BseRI | GAGGAG | 2 cut(s) | 2159, 3633 |
| BseSI | GKGCMC | 1 cut(s) | 590 |
| BseYI | CCCAGC | 1 cut(s) | 3440 |
| BsgI | GTGCAG | 3 cut(s) | 889, 2982, 3498 |
| Bsh1236I | CGCG | 1 cut(s) | 2980 |
| BshVI | ATCGAT | 1 cut(s) | 2079 |
| BsiHKAI | GWGCWC | 3 cut(s) | 178, 214, 590 |
| BsiHKCI | CYCGRG | 2 cut(s) | 171, 2627 |
| BsiSI | CCGG | 2 cut(s) | 1906, 3075 |
| BslFI | GGGAC | 4 cut(s) | 37, 863, 2715, 3409 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 705, 883, 1015, 1905, 2429, 3141, 3495, 4657 |
| BsmAI | GTCTC | 6 cut(s) | 907, 2316, 2867, 3086, 3948, 4268 |
| BsmFI | GGGAC | 4 cut(s) | 37, 863, 2715, 3409 |
| BsmI | GAATGC | 4 cut(s) | 317, 507, 3287, 4745 |
| Bso31I | GGTCTC | 1 cut(s) | 2867 |
| BsoBI | CYCGRG | 2 cut(s) | 171, 2627 |
| Bsp1286I | GDGCHC | 4 cut(s) | 178, 214, 590, 2628 |
| Bsp1407I | TGTACA | 3 cut(s) | 2073, 2649, 2905 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2526 |
| BspACI | CCGC | 3 cut(s) | 251, 2323, 3278 |
| BspCNI | CTCAG | 7 cut(s) | 4, 690, 1558, 1884, 2334, 2518, 4780 |
| BspDI | ATCGAT | 1 cut(s) | 2079 |
| BspFNI | CGCG | 1 cut(s) | 2980 |
| BspHI | TCATGA | 2 cut(s) | 2998, 3994 |
| BspLI | GGNNCC | 2 cut(s) | 53, 2033 |
| BspMAI | CTGCAG | 1 cut(s) | 3319 |
| BspMI | ACCTGC | 4 cut(s) | 1847, 2521, 3218, 4218 |
| BspPI | GGATC | 5 cut(s) | 339, 1026, 1542, 2100, 3041 |
| BspQI | GCTCTTC | 1 cut(s) | 754 |
| BspTI | CTTAAG | 1 cut(s) | 689 |
| BspTNI | GGTCTC | 1 cut(s) | 2867 |
| BsrDI | GCAATG | 3 cut(s) | 191, 2266, 4515 |
| BsrFI | RCCGGY | 1 cut(s) | 3074 |
| BsrGI | TGTACA | 3 cut(s) | 2073, 2649, 2905 |
| BssAI | RCCGGY | 1 cut(s) | 3074 |
| BssECI | CCNNGG | 4 cut(s) | 326, 996, 3973, 4811 |
| BssNI | GRCGYC | 2 cut(s) | 495, 3486 |
| BssSI | CACGAG | 1 cut(s) | 589 |
| BssT1I | CCWWGG | 2 cut(s) | 996, 4811 |
| Bst2BI | CACGAG | 1 cut(s) | 589 |
| Bst2UI | CCWGG | 4 cut(s) | 327, 2636, 3426, 3974 |
| Bst6I | CTCTTC | 3 cut(s) | 465, 754, 3748 |
| BstACI | GRCGYC | 2 cut(s) | 495, 3486 |
| BstAFI | CTTAAG | 1 cut(s) | 689 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3185, 3350 |
| BstAUI | TGTACA | 3 cut(s) | 2073, 2649, 2905 |
| BstBAI | YACGTR | 1 cut(s) | 2822 |
| BstC8I | GCNNGC | 5 cut(s) | 986, 990, 2592, 3076, 4506 |
| BstEII | GGTNACC | 1 cut(s) | 4090 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 3493, 4655 |
| BstF5I | GGATG | 9 cut(s) | 198, 1006, 1051, 1507, 1621, 2644, 3180, 3470, 3775 |
| BstFNI | CGCG | 1 cut(s) | 2980 |
| BstH2I | RGCGCY | 2 cut(s) | 3304, 4190 |
| BstHHI | GCGC | 2 cut(s) | 3303, 4189 |
| BstMAI | GTCTC | 6 cut(s) | 907, 2316, 2867, 3086, 3948, 4268 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 691, 1675, 1853, 2122, 3185, 3350, 3485 |
| BstNI | CCWGG | 4 cut(s) | 327, 2636, 3426, 3974 |
| BstNSI | RCATGY | 3 cut(s) | 586, 832, 1433 |
| BstPI | GGTNACC | 1 cut(s) | 4090 |
| BstSCI | CCNGG | 5 cut(s) | 325, 1905, 2634, 3424, 3972 |
| BstSFI | CTRYAG | 3 cut(s) | 3315, 3843, 4313 |
| BstSLI | GKGCMC | 1 cut(s) | 590 |
| BstUI | CGCG | 1 cut(s) | 2980 |
| BstV2I | GAAGAC | 4 cut(s) | 9, 1271, 1982, 3417 |
| BstX2I | RGATCY | 4 cut(s) | 331, 1018, 1534, 2092 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 519, 984, 3251, 3340 |
| BstYI | RGATCY | 4 cut(s) | 331, 1018, 1534, 2092 |
| Bsu15I | ATCGAT | 1 cut(s) | 2079 |
| BsuI | GTATCC | 2 cut(s) | 884, 4411 |
| BsuTUI | ATCGAT | 1 cut(s) | 2079 |
| BtgZI | GCGATG | 2 cut(s) | 465, 4612 |
| BtrI | CACGTC | 1 cut(s) | 1051 |
| BtsCI | GGATG | 9 cut(s) | 198, 1006, 1051, 1507, 1621, 2644, 3180, 3470, 3775 |
| BtsI | GCAGTG | 1 cut(s) | 2965 |
| BveI | ACCTGC | 4 cut(s) | 1847, 2521, 3218, 4218 |
| Cac8I | GCNNGC | 5 cut(s) | 986, 990, 2592, 3076, 4506 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1259, 3350, 4612 |
| CciI | TCATGA | 2 cut(s) | 2998, 3994 |
| CfoI | GCGC | 2 cut(s) | 3303, 4189 |
| Cfr10I | RCCGGY | 1 cut(s) | 3074 |
| Cfr13I | GGNCC | 2 cut(s) | 51, 2173 |
| ClaI | ATCGAT | 1 cut(s) | 2079 |
| CseI | GACGC | 1 cut(s) | 3494 |
| DraI | TTTAAA | 3 cut(s) | 840, 3534, 3729 |
| DraIII | CACNNNGTG | 1 cut(s) | 2333 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4063 |
| EaeI | YGGCCR | 3 cut(s) | 986, 3018, 4489 |
| Eam1104I | CTCTTC | 3 cut(s) | 465, 754, 3748 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4063 |
| EarI | CTCTTC | 3 cut(s) | 465, 754, 3748 |
| Ecl136II | GAGCTC | 1 cut(s) | 176 |
| Eco130I | CCWWGG | 2 cut(s) | 996, 4811 |
| Eco147I | AGGCCT | 2 cut(s) | 325, 783 |
| Eco24I | GRGCYC | 2 cut(s) | 178, 2628 |
| Eco31I | GGTCTC | 1 cut(s) | 2867 |
| Eco32I | GATATC | 1 cut(s) | 393 |
| Eco47I | GGWCC | 1 cut(s) | 51 |
| Eco47III | AGCGCT | 2 cut(s) | 3302, 4188 |
| Eco53kI | GAGCTC | 1 cut(s) | 176 |
| Eco57I | CTGAAG | 5 cut(s) | 1458, 2816, 4125, 4304, 4359 |
| Eco88I | CYCGRG | 2 cut(s) | 171, 2627 |
| Eco91I | GGTNACC | 1 cut(s) | 4090 |
| EcoICRI | GAGCTC | 1 cut(s) | 176 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 3493, 4655 |
| EcoO65I | GGTNACC | 1 cut(s) | 4090 |
| EcoRI | GAATTC | 1 cut(s) | 1481 |
| EcoRII | CCWGG | 4 cut(s) | 325, 2634, 3424, 3972 |
| EcoRV | GATATC | 1 cut(s) | 393 |
| EcoT14I | CCWWGG | 2 cut(s) | 996, 4811 |
| EcoT38I | GRGCYC | 2 cut(s) | 178, 2628 |
| ErhI | CCWWGG | 2 cut(s) | 996, 4811 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1438, 1470, 1456, 1488, 1824, 1856, 4250, 4282 |
| FaqI | GGGAC | 4 cut(s) | 37, 863, 2715, 3409 |
| FauNDI | CATATG | 1 cut(s) | 1963 |
| FbaI | TGATCA | 1 cut(s) | 2475 |
| FblI | GTMKAC | 1 cut(s) | 4014 |
| FokI | GGATG | 9 cut(s) | 205, 1013, 1058, 1514, 1628, 2651, 3187, 3477, 3782 |
| FriOI | GRGCYC | 2 cut(s) | 178, 2628 |
| FspBI | CTAG | 7 cut(s) | 321, 597, 1032, 2457, 3293, 3458, 3747 |
| GlaI | GCGC | 2 cut(s) | 3302, 4188 |
| GsaI | CCCAGC | 1 cut(s) | 3444 |
| GsuI | CTGGAG | 4 cut(s) | 1374, 2424, 3647, 4708 |
| HaeII | RGCGCY | 2 cut(s) | 3304, 4190 |
| HapII | CCGG | 2 cut(s) | 1906, 3075 |
| HgaI | GACGC | 1 cut(s) | 3494 |
| HhaI | GCGC | 2 cut(s) | 3303, 4189 |
| Hin1I | GRCGYC | 2 cut(s) | 495, 3486 |
| Hin6I | GCGC | 2 cut(s) | 3301, 4187 |
| HinP1I | GCGC | 2 cut(s) | 3301, 4187 |
| HincII | GTYRAC | 3 cut(s) | 499, 1779, 4335 |
| HindII | GTYRAC | 3 cut(s) | 499, 1779, 4335 |
| HindIII | AAGCTT | 2 cut(s) | 692, 1705 |
| HpaI | GTTAAC | 1 cut(s) | 1779 |
| HpaII | CCGG | 2 cut(s) | 1906, 3075 |
| Hpy99I | CGWCG | 1 cut(s) | 2031 |
| HpyCH4IV | ACGT | 5 cut(s) | 495, 721, 1050, 2038, 2821 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 691, 1675, 1853, 2122, 3185, 3350, 3485 |
| HpySE526I | ACGT | 5 cut(s) | 495, 721, 1050, 2038, 2821 |
| Hsp92I | GRCGYC | 2 cut(s) | 495, 3486 |
| HspAI | GCGC | 2 cut(s) | 3301, 4187 |
| KroI | GCCGGC | 1 cut(s) | 3074 |
| KroNI | GCCGGC | 1 cut(s) | 3076 |
| Ksp22I | TGATCA | 1 cut(s) | 2475 |
| KspAI | GTTAAC | 1 cut(s) | 1779 |
| LguI | GCTCTTC | 1 cut(s) | 754 |
| LmnI | GCTCC | 4 cut(s) | 2037, 2443, 2522, 4084 |
| MaeI | CTAG | 7 cut(s) | 321, 597, 1032, 2457, 3293, 3458, 3747 |
| MaeII | ACGT | 5 cut(s) | 495, 721, 1050, 2038, 2821 |
| MaeIII | GTNAC | 5 cut(s) | 962, 1027, 1192, 1390, 4090 |
| MflI | RGATCY | 4 cut(s) | 331, 1018, 1534, 2092 |
| MhlI | GDGCHC | 4 cut(s) | 178, 214, 590, 2628 |
| MlsI | TGGCCA | 3 cut(s) | 988, 3020, 4491 |
| MluNI | TGGCCA | 3 cut(s) | 988, 3020, 4491 |
| MlyI | GAGTC | 4 cut(s) | 23, 1812, 2113, 3356 |
| Mox20I | TGGCCA | 3 cut(s) | 988, 3020, 4491 |
| MroNI | GCCGGC | 1 cut(s) | 3074 |
| MroXI | GAANNNNTTC | 5 cut(s) | 111, 748, 767, 3324, 4598 |
| MscI | TGGCCA | 3 cut(s) | 988, 3020, 4491 |
| MslI | CAYNNNNRTG | 6 cut(s) | 921, 2540, 3249, 3338, 3657, 4795 |
| Msp20I | TGGCCA | 3 cut(s) | 988, 3020, 4491 |
| MspA1I | CMGCKG | 3 cut(s) | 1478, 3482, 4121 |
| MspCI | CTTAAG | 1 cut(s) | 689 |
| MspI | CCGG | 2 cut(s) | 1906, 3075 |
| MspR9I | CCNGG | 5 cut(s) | 327, 1907, 2636, 3426, 3974 |
| Mva1269I | GAATGC | 4 cut(s) | 317, 507, 3287, 4745 |
| MvaI | CCWGG | 4 cut(s) | 327, 2636, 3426, 3974 |
| MvnI | CGCG | 1 cut(s) | 2980 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 691, 1675, 1853, 2122, 3185, 3350, 3485 |
| NaeI | GCCGGC | 1 cut(s) | 3076 |
| NciI | CCSGG | 1 cut(s) | 1907 |
| NdeI | CATATG | 1 cut(s) | 1963 |
| NgoMIV | GCCGGC | 1 cut(s) | 3074 |
| NlaIV | GGNNCC | 2 cut(s) | 53, 2033 |
| NmuCI | GTSAC | 3 cut(s) | 962, 1027, 4090 |
| NspI | RCATGY | 3 cut(s) | 586, 832, 1433 |
| OliI | CACNNNNGTG | 1 cut(s) | 3249 |
| PaeR7I | CTCGAG | 2 cut(s) | 171, 2627 |
| PagI | TCATGA | 2 cut(s) | 2998, 3994 |
| PaqCI | CACCTGC | 2 cut(s) | 1847, 4218 |
| PceI | AGGCCT | 2 cut(s) | 325, 783 |
| PciI | ACATGT | 2 cut(s) | 582, 1429 |
| PciSI | GCTCTTC | 1 cut(s) | 754 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2035, 3790 |
| PctI | GAATGC | 4 cut(s) | 317, 507, 3287, 4745 |
| PdiI | GCCGGC | 1 cut(s) | 3076 |
| PdmI | GAANNNNTTC | 5 cut(s) | 111, 748, 767, 3324, 4598 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 705, 883, 2429 |
| PfoI | TCCNGGA | 1 cut(s) | 2634 |
| PleI | GAGTC | 4 cut(s) | 22, 1811, 2112, 3355 |
| PpsI | GAGTC | 4 cut(s) | 22, 1811, 2112, 3355 |
| Ppu21I | YACGTR | 1 cut(s) | 2822 |
| PscI | ACATGT | 2 cut(s) | 582, 1429 |
| PshBI | ATTAAT | 1 cut(s) | 2064 |
| PsiI | TTATAA | 2 cut(s) | 1509, 1586 |
| Psp124BI | GAGCTC | 1 cut(s) | 178 |
| Psp6I | CCWGG | 4 cut(s) | 325, 2634, 3424, 3972 |
| PspEI | GGTNACC | 1 cut(s) | 4090 |
| PspFI | CCCAGC | 1 cut(s) | 3440 |
| PspGI | CCWGG | 4 cut(s) | 325, 2634, 3424, 3972 |
| PspN4I | GGNNCC | 2 cut(s) | 53, 2033 |
| PspPI | GGNCC | 2 cut(s) | 51, 2173 |
| PspXI | VCTCGAGB | 2 cut(s) | 171, 2627 |
| PstI | CTGCAG | 1 cut(s) | 3319 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1259, 3350, 4612 |
| PsuI | RGATCY | 4 cut(s) | 331, 1018, 1534, 2092 |
| PvuII | CAGCTG | 3 cut(s) | 1478, 3482, 4121 |
| RseI | CAYNNNNRTG | 6 cut(s) | 921, 2540, 3249, 3338, 3657, 4795 |
| SacI | GAGCTC | 1 cut(s) | 178 |
| SapI | GCTCTTC | 1 cut(s) | 754 |
| Sau96I | GGNCC | 2 cut(s) | 51, 2173 |
| SchI | GAGTC | 4 cut(s) | 23, 1812, 2113, 3356 |
| ScrFI | CCNGG | 5 cut(s) | 327, 1907, 2636, 3426, 3974 |
| SduI | GDGCHC | 4 cut(s) | 178, 214, 590, 2628 |
| SfcI | CTRYAG | 3 cut(s) | 3315, 3843, 4313 |
| Sfr274I | CTCGAG | 2 cut(s) | 171, 2627 |
| SinI | GGWCC | 1 cut(s) | 51 |
| SlaI | CTCGAG | 2 cut(s) | 171, 2627 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 921, 2540, 3249, 3338, 3657, 4795 |
| SmlI | CTYRAG | 7 cut(s) | 171, 629, 689, 1441, 1798, 2627, 3635 |
| SmoI | CTYRAG | 7 cut(s) | 171, 629, 689, 1441, 1798, 2627, 3635 |
| SpeI | ACTAGT | 1 cut(s) | 1031 |
| SseBI | AGGCCT | 2 cut(s) | 325, 783 |
| SsiI | CCGC | 3 cut(s) | 251, 2323, 3278 |
| SspI | AATATT | 5 cut(s) | 134, 2301, 3324, 3905, 4806 |
| SspMI | CTAG | 7 cut(s) | 321, 597, 1032, 2457, 3293, 3458, 3747 |
| SstI | GAGCTC | 1 cut(s) | 178 |
| StuI | AGGCCT | 2 cut(s) | 325, 783 |
| StyD4I | CCNGG | 5 cut(s) | 325, 1905, 2634, 3424, 3972 |
| StyI | CCWWGG | 2 cut(s) | 996, 4811 |
| TaiI | ACGT | 5 cut(s) | 498, 724, 1053, 2041, 2824 |
| TaqI | TCGA | 9 cut(s) | 172, 208, 1436, 1490, 1672, 2079, 2628, 2747, 3718 |
| TatI | WGTACW | 6 cut(s) | 2073, 2641, 2649, 2905, 3858, 4021 |
| TseFI | GTSAC | 3 cut(s) | 962, 1027, 4090 |
| Tsp45I | GTSAC | 3 cut(s) | 962, 1027, 4090 |
| TspGWI | ACGGA | 2 cut(s) | 1826, 3966 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 705, 883, 2429 |
| Vha464I | CTTAAG | 1 cut(s) | 689 |
| VneI | GTGCAC | 1 cut(s) | 586 |
| VpaK11BI | GGWCC | 1 cut(s) | 51 |
| VspI | ATTAAT | 1 cut(s) | 2064 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 3493, 4655 |
| XbaI | TCTAGA | 1 cut(s) | 2456 |
| XceI | RCATGY | 3 cut(s) | 586, 832, 1433 |
| XhoI | CTCGAG | 2 cut(s) | 171, 2627 |
| XmiI | GTMKAC | 1 cut(s) | 4014 |
| XmnI | GAANNNNTTC | 5 cut(s) | 111, 748, 767, 3324, 4598 |
| XspI | CTAG | 7 cut(s) | 321, 597, 1032, 2457, 3293, 3458, 3747 |
| ZraI | GACGTC | 1 cut(s) | 496 |