Prupe.1G215600_v2.0.a1

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000223
Physical Location & Seq
Reverse (-)
22842509 .. 22849999
7491 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G215600.1

Sequence Viewer

Length: 4398 bp
ATGATGGAAGCTAGAACAGATCGTTTCACTGACACTGTGTTTTCTTGGTCGTTTGAAGACATTTTCAATGAAAATCTTTACAAGAACCAGGTGCAAAAAATTCCTGAATCATTTGATTCGGTTAAGCATTATTTTTCTTCTTATTTATATCCATTATTGGAAGAAACTCGAGCACAGGTGCATTCGAGTATGGAAACCGTTGACAGATCACCATTTGCTGAAGTTGTTGCTTTTGAAAAATGCAATCCTTATGGTCCTTATGGGGAAAATGTATATCATATCAAGGTTGATTGCTGGGAAAACAGGGTCAATGATCGTGGCAAGGAACCATACAAAACTTTGCCGGGGGATCTTTTAATTGTCTTAGCAGATTCCAAACCCGAAACGGTTTCTGATTTACGAAGGGTAGGGAGGTCCTTCTGGGCTTTTGTTTCAGTCACATATGTCCCAGAAAATGAGGACGAGGATGACATTGACAGCCCAGAAAATGAGGATGAGGATGACATTGACAACCCAGAAAATGAGGATGAGGATGACATTGACAGTACTTCTCTTTATTTTAGAGTCAAAAGGCATCCAAAGAGTTTGAACAGAATATGGAAAGCATTGCACATGTTTGGAAATCTGAAGATTATCAAGGAAGTTTTGTGCACCGATTCTGTGGCTCAGAAAAACAATTATCTCTGTTCTGAAACGAATGATGACATTCGGGATAAGTGGTTAGTTGAGAGTTCATCATCAGGATTGAATGAGTCCCAAACTGGGGCAGTTTTGGCCTGCCTTGAAAGGCTGCGTTGTGATTCCAAGTCTACCGTGCAACTTATATGGGGTGCACCCGGGACACGAAAAACTAAAACCAGCGCGACGCTTCTTTTTACTCTGTTACGGATGAACTGTAGTACTCTAATTTGTGCTCCAACAAATGTTGCAATAACTGAAGTTGCTTCTTGTGTTCTAAAGATGGTAACTGAAGCAAAGTCCAATTCTTTAGGAGAAATTCTTCTATTTGGGAATAAGGAGCGACTCAAAGTTGGACCACACATTGAAGCTATATATTTGAATGAGCGTGTCAAAAGGCTAAGGGAGTGCTTGGGGCCAGTGACTGGTTGGAGTATTTGCTTCGCTTCAATGATAGGTTTTCTTGAAGATTGTGTTTCTCATTACCATATTTTCTTGGAAAATGAGGGTGTTAGTGAAATGAAAGAGAAAGAATGCAGAACTTACACTCAAGTTATCAAGGGGAAGTGCAAATCATTTCTTGAATTTTTCAGAGATAGATTTGTTTCTACTGCATCAAAGCTAAGACACTGCATTTCTACCTTCTGTACCCATATAGCCAAAAATTACTTTTTGGCACATACTTTCCAAAACATGATTTCTCTCATAGGATTATTTGATTCCATTGAATCATTATTGTTGCATGGTGACATTGTTTCTGAAGCATTGGAACACCTTTGCTCTTGTTCAAAAGTTGAAGTTGTGCCAGAGTCATTTGTAGATAACTCATTTCTGCTGTGCATGAAGAGAAAAGAATGCCTTTCAGTATTACGGACTCTACAGGATTCTCTTAGTGGACTTGACCTTCCAAATTTTAGGAATGGAGAAGCTCTAATGGAATTCTGTTTTCAAAGAGCTTCCTTAATTTTTTGCACTGCGTCGAGTTCGTATAAGCTGCATAGAGTGGCAATGGAGCCACTGACCATTGTTGTTATTGATGAAGCTGCACAATTGAAGGAGTGTGAATCAACAATACCCTTGCAACTACCAGGTGTGAAGCATGCTGTTCTTGTTGGTGATGAATGTCAGTTACCAGCTACGGTGAACAGCAATGTTTCTGTTAGGGCTGGTTTTTCAAGAAGCTTGTTTGAGAGGTTGAGCTCAATGGGCCACTCAAAACACCTTCTGAATATGCAATACAGAATGCATCCCTCAATAAGTTTGTTCCCAAATTCATATTTCTATAACAACCAGATCCTAGACGCTCCAAATGTTAAAAAAAAAAAAAAAAGCCATGAGAAACACTATCTCCCGGGGTCAATGTTTGGTCCCTTTTCTTTTATAAATGTAATTGATGGAAGAGAGGAGAAGGATGAGGATGGACGTAGTAGAAAGAATATGGTCGAGGTTGCTATTATTCTGAAAATACTGCGGAAGCTGTACAAAGAATGGATTGTTTCAAAACAGAAACTCAGTATTGGGGTGGTATCACCGTATGCTGCTCAAGTAGTTGCAGTTCAGGACAAACTTCCACAGAAGTATGACAAGATGGATGGCTTTACAGTGAAGGTGAAGACGGTTGATGGGTTCCAGGGTGGGGAAGATGACATAATTATTGTGTCCACTGTACGATCTACCATTCGTCAATCCATTGATTTTATATCAAAACCGCAAAGAGTTATGTCGCTCTTACAAGGGCTAGGTATGGTTTTATGTAAACTTGTATCTTTTTGCATCATTGTTGATAAGTTTGGTGAAAATAACTACTCTTCCCTAATGACTTTAGGCATTGCCTTTGGATTCTGGGAAGTGAAAGGACTCTATCTGATAGGGAATCTGTTTGGAAGGACTTGGTCCTTGATGCCAAACGTCGTCAATGCTTCTTTAAGGCTGATGAAGACAAGGATTTGGCCGGGTGATAACTTTCTGAAGTCATTCAAAAAGCTGAAGTCAATCAGTTTGAGGAAGTCTGTATTATATCTTCTGCTGAAGCTTTCCGATGGTTGGAGATTTAAGAAGCCAAATGTTTGTGGAAGCTCTTCACCAATCTTGAGGCAATATAAGGTTGAAGGTCTATACATTGTTTGCACAACTGACATTGCAAAGGATGTGAAATACATTCAAATATTGAAGATTTGGGACATATTGCCTCTAAGGGATATTCCAAAATTGGTAAAACGTCTAGAGAATATTTTGAAAAGATATACAGATGATTTTATCAATCGGTGCAAGGAGAAATTAATTGAGGGTAATTTGGAAGTTCCCAAGAGCTGGCTACCCTCTTTGGACATTGTCCGGTTCAAGGATCTTAGCATCACTGAAAACCAGAGTGATTTAGTTGGTGATAATGATTCTGACCGTAGAAGTTATGTTGACAATGCACAGGTCAGCGAGAGTTTGCAGCTCATGAAATTTTACTCCTCGTCATCTGGTGTAGTAAACCACTTGCTTTCTGACCATGAGGGTAGAGAGTTGGATCTTCCATTCGAACTTACAGACCAGGAAATGGAGATTATTCTTCATCGTAAAAGTAGCTTTATATTTGGACGGTCAGGAACAGGTAAGACCACGGTTTTAACCATGAAATTGTTTCAGAATGAACAACGTTACCAATTGGCAGTGCAAGGATGCGTTAGTTGTCAAAATAGCATGGTTGAGCAGAGTACTTCAGCTACTAAGGGAACTCTTCACCAACTTTTTGTGACCGTGAGTCCTAAACTGTGTTTTGCCATCAAGCAACATGTTTTAAACTTAAAAAGTTTTGCATGTGGTGGAAGTGATTCAACTGAAAAGAGTTTGATTGATATGGCTGATTTTGATGAGGAGGAAGCCCAATTCAAGGATATCAAGGATTCATTTCATGATATTCCTCCCAATTCTTACCCTCTTGTCATAACATTCCATAAGTTCTTGATGATGCTTGATGGAACACTGGGGAACTCATACTTTGAACGATTCCTTGATGCAAGAAAACTTTCACACGGTCAATTGCAAAGTTCAAGATCAATTTCTTTGCAGACCTTTATAAGGACCAAGGAGGTGAAGTATGAGAGATTCAGTTCATCTTACTGGCCCCATTTTAATATCCAGTTAACAAAGATGCTCGAAGCTTCAAGAGTCTTTACAGAGATAATATCTCATATTAAAGGTGGTTTGGAAGCTATGGAAGCAGGTGATGGTAAACTCAATCGCGAGGACTATGTTCGATTGTCAGAGAGCCGGGGTTCCAATTTAAGCAAGCAAAAGAGAGAAGCAATATACGATATATTTCAGGCTTATGAAAAAATGAAGATGAAAAATGGTGAATTTGATCTGGGTGATTTTGTAATTGATCTTCACCATCGTCTGAGGCATGAAAAATATGGGGGTGATCAAATGGACTTTGTTTATATCGATGAGGTTCAAGATCTCACAATGAGTCAAATTGCTCTATTTAAACATATGTGCATCAATATTGAAGTGGGATTTATTTTTTCTGGTGATACAGCACAAACAATTGCAAGGGGTATTGATTTTAGGTTCCAAGATATACGACATTTGTTCCACAAGAATTGGTGCAAGAAGCATTTGCAAAAGGTGGAAGCTTTTTATAGGCAAATGTCAAGCCATTCCTGTGAGTGTGCAGGAAAGCATTATGCACCAAAGTCTTCAAATCAATATGTGGAGGAGCTAAGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

1466

Amino Acids

167.52

Weight (kDa)

6.8

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2060, 3743
AarI CACCTGC 1 cut(s) 3878
Acc36I ACCTGC 1 cut(s) 3878
AccB7I CCANNNNNTGG 3 cut(s) 1103, 2988, 3223
AccI GTMKAC 1 cut(s) 809
AccII CGCG 2 cut(s) 863, 3909
AciI CCGC 2 cut(s) 2149, 2387
AclI AACGTT 1 cut(s) 3322
AclWI GGATC 4 cut(s) 357, 1966, 3030, 3201
AcoI YGGCCR 1 cut(s) 2627
AcsI RAATTY 8 cut(s) 99, 996, 1262, 1588, 1616, 1948, 3128, 4022
AcuI CTGAAG 9 cut(s) 240, 647, 957, 990, 1458, 2666, 2684, 2726, 3369
AfaI GTAC 7 cut(s) 547, 901, 1327, 2159, 2346, 3382, 4393
AflIII ACRYGT 2 cut(s) 612, 3457
AhdI GACNNNNNGTC 1 cut(s) 3426
AjnI CCWGG 4 cut(s) 87, 1765, 2307, 3216
Alw21I GWGCWC 5 cut(s) 175, 653, 835, 916, 1880
Alw44I GTGCAC 2 cut(s) 649, 831
AlwI GGATC 4 cut(s) 357, 1966, 3030, 3201
AlwNI CAGNNNCTG 1 cut(s) 1103
Ama87I CYCGRG 3 cut(s) 168, 836, 2029
AoxI GGCC 5 cut(s) 774, 1094, 1885, 2627, 3788
ApaLI GTGCAC 2 cut(s) 649, 831
ApeKI GCWGC 5 cut(s) 790, 1672, 1721, 2216, 3118
ApoI RAATTY 8 cut(s) 99, 996, 1262, 1588, 1616, 1948, 3128, 4022
AseI ATTAAT 1 cut(s) 2957
Asp700I GAANNNNTTC 5 cut(s) 999, 2651, 2755, 3496, 3691
AspLEI GCGC 1 cut(s) 863
AspS9I GGNCC 9 cut(s) 254, 414, 1034, 1094, 1885, 2045, 2571, 3747, 3789
AsuC2I CCSGG 7 cut(s) 345, 837, 838, 2030, 2031, 2631, 3938
AsuII TTCGAA 1 cut(s) 3204
AvaI CYCGRG 3 cut(s) 168, 836, 2029
AvaII GGWCC 6 cut(s) 254, 414, 1034, 2045, 2571, 3747
BaeGI GKGCMC 2 cut(s) 653, 835
BanII GRGCYC 1 cut(s) 1880
BarI GAAGNNNNNNTAC 4 cut(s) 2682, 2714, 4035, 4067
BbsI GAAGAC 4 cut(s) 63, 2297, 2621, 4356
Bbv12I GWGCWC 5 cut(s) 175, 653, 835, 916, 1880
BbvI GCAGC 5 cut(s) 777, 1659, 1708, 2203, 3130
BciT130I CCWGG 4 cut(s) 89, 1767, 2309, 3218
BclI TGATCA 1 cut(s) 4087
BcnI CCSGG 7 cut(s) 345, 837, 838, 2030, 2031, 2631, 3938
BfaI CTAG 4 cut(s) 12, 1976, 2417, 2900
BfmI CTRYAG 2 cut(s) 895, 1556
BfuAI ACCTGC 1 cut(s) 3878
BglII AGATCT 1 cut(s) 4123
BisI GCNGC 5 cut(s) 791, 1673, 1722, 2217, 3119
BlsI GCNGC 5 cut(s) 792, 1674, 1723, 2218, 3120
BmcAI AGTACT 3 cut(s) 547, 901, 3382
Bme18I GGWCC 6 cut(s) 254, 414, 1034, 2045, 2571, 3747
BmeRI GACNNNNNGTC 1 cut(s) 3426
BmeT110I CYCGRG 3 cut(s) 168, 836, 2029
BmgT120I GGNCC 9 cut(s) 254, 414, 1034, 1094, 1885, 2045, 2571, 3747, 3789
BmiI GGNNCC 8 cut(s) 327, 1095, 1692, 2047, 2306, 3791, 3943, 4238
BmrI ACTGGG 2 cut(s) 771, 3659
BmuI ACTGGG 2 cut(s) 771, 3659
BpiI GAAGAC 4 cut(s) 63, 2297, 2621, 4356
Bpu10I CCTNAGC 1 cut(s) 1079
Bpu14I TTCGAA 1 cut(s) 3204
BpuEI CTTGAG 3 cut(s) 1212, 2205, 2788
BpuMI CCSGG 7 cut(s) 345, 837, 838, 2030, 2031, 2631, 3938
Bsa29I ATCGAT 1 cut(s) 4110
BsaJI CCNNGG 8 cut(s) 344, 836, 2029, 2030, 2308, 3285, 3750, 3937
BsaWI WCCGGW 1 cut(s) 3012
BsaXI ACNNNNNCTCC 4 cut(s) 2010, 2040, 3746, 3776
Bse1I ACTGG 6 cut(s) 766, 1097, 1108, 3654, 3791, 3805
Bse3DI GCAATG 5 cut(s) 605, 1692, 1834, 2505, 2814
BseBI CCWGG 4 cut(s) 89, 1767, 2309, 3218
BseCI ATCGAT 1 cut(s) 4110
BseDI CCNNGG 8 cut(s) 344, 836, 2029, 2030, 2308, 3285, 3750, 3937
BseMI GCAATG 5 cut(s) 605, 1692, 1834, 2505, 2814
BseMII CTCAG 3 cut(s) 680, 2203, 4055
BseNI ACTGG 6 cut(s) 766, 1097, 1108, 3654, 3791, 3805
BseRI GAGGAG 4 cut(s) 2096, 3127, 3554, 4397
BseSI GKGCMC 2 cut(s) 653, 835
BseXI GCAGC 5 cut(s) 777, 1659, 1708, 2203, 3130
BseYI CCCAGC 1 cut(s) 294
BsgI GTGCAG 2 cut(s) 1707, 4359
Bsh1236I CGCG 2 cut(s) 863, 3909
BshFI GGCC 5 cut(s) 776, 1096, 1887, 2629, 3790
BshVI ATCGAT 1 cut(s) 4110
BsiHKAI GWGCWC 5 cut(s) 175, 653, 835, 916, 1880
BsiHKCI CYCGRG 3 cut(s) 168, 836, 2029
BsiSI CCGG 6 cut(s) 344, 837, 2030, 2630, 3013, 3937
BslFI GGGAC 5 cut(s) 431, 739, 853, 2031, 2870
BsmFI GGGAC 5 cut(s) 431, 739, 853, 2031, 2870
BsmI GAATGC 4 cut(s) 181, 1217, 1538, 1926
BsnI GGCC 5 cut(s) 776, 1096, 1887, 2629, 3790
BsoBI CYCGRG 3 cut(s) 168, 836, 2029
Bsp119I TTCGAA 1 cut(s) 3204
Bsp1286I GDGCHC 5 cut(s) 175, 653, 835, 916, 1880
Bsp1407I TGTACA 1 cut(s) 2157
Bsp68I TCGCGA 1 cut(s) 3909
BspACI CCGC 2 cut(s) 2149, 2387
BspANI GGCC 5 cut(s) 776, 1096, 1887, 2629, 3790
BspCNI CTCAG 3 cut(s) 679, 2202, 4056
BspDI ATCGAT 1 cut(s) 4110
BspFNI CGCG 2 cut(s) 863, 3909
BspHI TCATGA 2 cut(s) 3123, 3577
BspLI GGNNCC 8 cut(s) 327, 1095, 1692, 2047, 2306, 3791, 3943, 4238
BspMI ACCTGC 1 cut(s) 3878
BspPI GGATC 4 cut(s) 357, 1966, 3030, 3201
BspQI GCTCTTC 1 cut(s) 2761
BspT104I TTCGAA 1 cut(s) 3204
BsrDI GCAATG 5 cut(s) 605, 1692, 1834, 2505, 2814
BsrGI TGTACA 1 cut(s) 2157
BsrI ACTGG 6 cut(s) 766, 1097, 1108, 3654, 3791, 3805
BssECI CCNNGG 8 cut(s) 344, 836, 2029, 2030, 2308, 3285, 3750, 3937
BssT1I CCWWGG 1 cut(s) 3750
Bst2UI CCWGG 4 cut(s) 89, 1767, 2309, 3218
Bst6I CTCTTC 5 cut(s) 1517, 2071, 2491, 2761, 3408
BstAUI TGTACA 1 cut(s) 2157
BstBI TTCGAA 1 cut(s) 3204
BstC8I GCNNGC 4 cut(s) 778, 1779, 2990, 3956
BstDSI CCRYGG 1 cut(s) 3285
BstENI CCTNNNNNAGG 1 cut(s) 3742
BstFNI CGCG 2 cut(s) 863, 3909
BstHHI GCGC 1 cut(s) 863
BstMWI GCNNNNNNNGC 3 cut(s) 773, 1884, 3884
BstNI CCWGG 4 cut(s) 89, 1767, 2309, 3218
BstNSI RCATGY 4 cut(s) 616, 1781, 3461, 3486
BstSFI CTRYAG 2 cut(s) 895, 1556
BstSLI GKGCMC 2 cut(s) 653, 835
BstUI CGCG 2 cut(s) 863, 3909
BstV1I GCAGC 5 cut(s) 777, 1659, 1708, 2203, 3130
BstV2I GAAGAC 4 cut(s) 63, 2297, 2621, 4356
BstX2I RGATCY 5 cut(s) 349, 1971, 3022, 3193, 4123
BstYI RGATCY 5 cut(s) 349, 1971, 3022, 3193, 4123
Bsu15I ATCGAT 1 cut(s) 4110
BsuRI GGCC 5 cut(s) 776, 1096, 1887, 2629, 3790
BsuTUI ATCGAT 1 cut(s) 4110
BtgI CCRYGG 1 cut(s) 3285
BtsI GCAGTG 3 cut(s) 1306, 1650, 3342
BtuMI TCGCGA 1 cut(s) 3909
BveI ACCTGC 1 cut(s) 3878
Cac8I GCNNGC 4 cut(s) 778, 1779, 2990, 3956
CaiI CAGNNNCTG 1 cut(s) 1103
CciI TCATGA 2 cut(s) 3123, 3577
CfoI GCGC 1 cut(s) 863
Cfr13I GGNCC 9 cut(s) 254, 414, 1034, 1094, 1885, 2045, 2571, 3747, 3789
Cfr9I CCCGGG 2 cut(s) 836, 2029
ClaI ATCGAT 1 cut(s) 4110
CseI GACGC 3 cut(s) 874, 1644, 1988
CsiI ACCWGGT 2 cut(s) 87, 1765
Csp6I GTAC 7 cut(s) 546, 900, 1326, 2158, 2345, 3381, 4392
CspCI CAANNNNNGTGG 4 cut(s) 298, 333, 4250, 4285
CviQI GTAC 7 cut(s) 546, 900, 1326, 2158, 2345, 3381, 4392
DraI TTTAAA 2 cut(s) 3465, 4153
DriI GACNNNNNGTC 1 cut(s) 3426
EaeI YGGCCR 1 cut(s) 2627
Eam1104I CTCTTC 5 cut(s) 1517, 2071, 2491, 2761, 3408
Eam1105I GACNNNNNGTC 1 cut(s) 3426
EarI CTCTTC 5 cut(s) 1517, 2071, 2491, 2761, 3408
Ecl136II GAGCTC 1 cut(s) 1878
Eco130I CCWWGG 1 cut(s) 3750
Eco24I GRGCYC 1 cut(s) 1880
Eco32I GATATC 1 cut(s) 3562
Eco47I GGWCC 6 cut(s) 254, 414, 1034, 2045, 2571, 3747
Eco53kI GAGCTC 1 cut(s) 1878
Eco57I CTGAAG 9 cut(s) 240, 647, 957, 990, 1458, 2666, 2684, 2726, 3369
Eco88I CYCGRG 3 cut(s) 168, 836, 2029
EcoICRI GAGCTC 1 cut(s) 1878
EcoNI CCTNNNNNAGG 1 cut(s) 3742
EcoO109I RGGNCCY 1 cut(s) 414
EcoRI GAATTC 1 cut(s) 1616
EcoRII CCWGG 4 cut(s) 87, 1765, 2307, 3216
EcoRV GATATC 1 cut(s) 3562
EcoT14I CCWWGG 1 cut(s) 3750
EcoT22I ATGCAT 1 cut(s) 1926
EcoT38I GRGCYC 1 cut(s) 1880
ErhI CCWWGG 1 cut(s) 3750
FalI AAGNNNNNCTT 2 cut(s) 1521, 1553
FaqI GGGAC 5 cut(s) 431, 739, 853, 2031, 2870
FauNDI CATATG 2 cut(s) 442, 4158
FbaI TGATCA 1 cut(s) 4087
FblI GTMKAC 1 cut(s) 809
Fnu4HI GCNGC 5 cut(s) 791, 1673, 1722, 2217, 3119
FriOI GRGCYC 1 cut(s) 1880
Fsp4HI GCNGC 5 cut(s) 791, 1673, 1722, 2217, 3119
FspBI CTAG 4 cut(s) 12, 1976, 2417, 2900
GlaI GCGC 1 cut(s) 862
GluI GCNGC 5 cut(s) 791, 1673, 1722, 2217, 3119
GsaI CCCAGC 1 cut(s) 298
HaeIII GGCC 5 cut(s) 776, 1096, 1887, 2629, 3790
HapII CCGG 6 cut(s) 344, 837, 2030, 2630, 3013, 3937
HgaI GACGC 3 cut(s) 874, 1644, 1988
HhaI GCGC 1 cut(s) 863
Hin6I GCGC 1 cut(s) 861
HinP1I GCGC 1 cut(s) 861
HincII GTYRAC 3 cut(s) 202, 3091, 3810
HindII GTYRAC 3 cut(s) 202, 3091, 3810
HindIII AAGCTT 4 cut(s) 1858, 2708, 3825, 4299
HpaI GTTAAC 1 cut(s) 3810
HpaII CCGG 6 cut(s) 344, 837, 2030, 2630, 3013, 3937
Hpy99I CGWCG 3 cut(s) 868, 1660, 2591
HpyCH4IV ACGT 4 cut(s) 2101, 2586, 2896, 3322
HpyF10VI GCNNNNNNNGC 3 cut(s) 773, 1884, 3884
HpySE526I ACGT 4 cut(s) 2101, 2586, 2896, 3322
HspAI GCGC 1 cut(s) 861
Ksp22I TGATCA 1 cut(s) 4087
KspAI GTTAAC 1 cut(s) 3810
LguI GCTCTTC 1 cut(s) 2761
LmnI GCTCC 5 cut(s) 919, 1018, 1690, 1987, 4384
Lsp1109I GCAGC 5 cut(s) 777, 1659, 1708, 2203, 3130
MabI ACCWGGT 2 cut(s) 87, 1765
MaeI CTAG 4 cut(s) 12, 1976, 2417, 2900
MaeII ACGT 4 cut(s) 2101, 2586, 2896, 3322
MaeIII GTNAC 8 cut(s) 436, 882, 964, 1099, 1424, 1806, 3323, 3418
MfeI CAATTG 4 cut(s) 1727, 3329, 3704, 4212
MflI RGATCY 5 cut(s) 349, 1971, 3022, 3193, 4123
MhlI GDGCHC 5 cut(s) 175, 653, 835, 916, 1880
MlyI GAGTC 9 cut(s) 573, 761, 1017, 1496, 1546, 2529, 3436, 3843, 4144
MmeI TCCRAC 5 cut(s) 941, 1012, 1088, 2702, 3171
Mph1103I ATGCAT 1 cut(s) 1926
MroXI GAANNNNTTC 5 cut(s) 999, 2651, 2755, 3496, 3691
MslI CAYNNNNRTG 1 cut(s) 4329
MspI CCGG 6 cut(s) 344, 837, 2030, 2630, 3013, 3937
MunI CAATTG 4 cut(s) 1727, 3329, 3704, 4212
Mva1269I GAATGC 4 cut(s) 181, 1217, 1538, 1926
MvaI CCWGG 4 cut(s) 89, 1767, 2309, 3218
MvnI CGCG 2 cut(s) 863, 3909
MwoI GCNNNNNNNGC 3 cut(s) 773, 1884, 3884
NciI CCSGG 7 cut(s) 345, 837, 838, 2030, 2031, 2631, 3938
NdeI CATATG 2 cut(s) 442, 4158
NlaIV GGNNCC 8 cut(s) 327, 1095, 1692, 2047, 2306, 3791, 3943, 4238
NmuCI GTSAC 4 cut(s) 436, 1099, 1424, 3418
NruI TCGCGA 1 cut(s) 3909
NsiI ATGCAT 1 cut(s) 1926
NspI RCATGY 4 cut(s) 616, 1781, 3461, 3486
NspV TTCGAA 1 cut(s) 3204
PaeI GCATGC 1 cut(s) 1781
PaeR7I CTCGAG 1 cut(s) 168
PagI TCATGA 2 cut(s) 3123, 3577
PaqCI CACCTGC 1 cut(s) 3878
PciI ACATGT 2 cut(s) 612, 3457
PciSI GCTCTTC 1 cut(s) 2761
PctI GAATGC 4 cut(s) 181, 1217, 1538, 1926
PdmI GAANNNNTTC 5 cut(s) 999, 2651, 2755, 3496, 3691
PflFI GACNNNGTC 2 cut(s) 2569, 3008
PflMI CCANNNNNTGG 3 cut(s) 1103, 2988, 3223
PkrI GCNGC 5 cut(s) 792, 1674, 1723, 2218, 3120
PleI GAGTC 9 cut(s) 572, 760, 1017, 1495, 1546, 2529, 3435, 3842, 4143
PpsI GAGTC 9 cut(s) 572, 760, 1017, 1495, 1546, 2529, 3435, 3842, 4143
PpuMI RGGWCCY 1 cut(s) 414
PscI ACATGT 2 cut(s) 612, 3457
PshBI ATTAAT 1 cut(s) 2957
PsiI TTATAA 2 cut(s) 2060, 3743
Psp124BI GAGCTC 1 cut(s) 1880
Psp1406I AACGTT 1 cut(s) 3322
Psp5II RGGWCCY 1 cut(s) 414
Psp6I CCWGG 4 cut(s) 87, 1765, 2307, 3216
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 4 cut(s) 87, 1765, 2307, 3216
PspN4I GGNNCC 8 cut(s) 327, 1095, 1692, 2047, 2306, 3791, 3943, 4238
PspPI GGNCC 9 cut(s) 254, 414, 1034, 1094, 1885, 2045, 2571, 3747, 3789
PspPPI RGGWCCY 1 cut(s) 414
PspXI VCTCGAGB 1 cut(s) 168
PsrI GAACNNNNNNTAC 2 cut(s) 2217, 2249
PstNI CAGNNNCTG 1 cut(s) 1103
PsuI RGATCY 5 cut(s) 349, 1971, 3022, 3193, 4123
PsyI GACNNNGTC 2 cut(s) 2569, 3008
RruI TCGCGA 1 cut(s) 3909
RsaI GTAC 7 cut(s) 547, 901, 1327, 2159, 2346, 3382, 4393
RsaNI GTAC 7 cut(s) 546, 900, 1326, 2158, 2345, 3381, 4392
RseI CAYNNNNRTG 1 cut(s) 4329
SacI GAGCTC 1 cut(s) 1880
SapI GCTCTTC 1 cut(s) 2761
SatI GCNGC 5 cut(s) 791, 1673, 1722, 2217, 3119
Sau96I GGNCC 9 cut(s) 254, 414, 1034, 1094, 1885, 2045, 2571, 3747, 3789
ScaI AGTACT 3 cut(s) 547, 901, 3382
SchI GAGTC 9 cut(s) 573, 761, 1017, 1496, 1546, 2529, 3436, 3843, 4144
SduI GDGCHC 5 cut(s) 175, 653, 835, 916, 1880
SexAI ACCWGGT 2 cut(s) 87, 1765
SfcI CTRYAG 2 cut(s) 895, 1556
Sfr274I CTCGAG 1 cut(s) 168
SfuI TTCGAA 1 cut(s) 3204
SinI GGWCC 6 cut(s) 254, 414, 1034, 2045, 2571, 3747
SlaI CTCGAG 1 cut(s) 168
SmaI CCCGGG 2 cut(s) 838, 2031
SmiMI CAYNNNNRTG 1 cut(s) 4329
SmlI CTYRAG 4 cut(s) 168, 1227, 2220, 2767
SmoI CTYRAG 4 cut(s) 168, 1227, 2220, 2767
SphI GCATGC 1 cut(s) 1781
SsiI CCGC 2 cut(s) 2149, 2387
SspI AATATT 3 cut(s) 2844, 2908, 4171
SspMI CTAG 4 cut(s) 12, 1976, 2417, 2900
SstI GAGCTC 1 cut(s) 1880
StyI CCWWGG 1 cut(s) 3750
TaiI ACGT 4 cut(s) 2104, 2589, 2899, 3325
TaqI TCGA 8 cut(s) 169, 185, 1658, 2121, 3204, 3822, 3922, 4110
TatI WGTACW 5 cut(s) 545, 899, 2157, 3380, 4391
TseFI GTSAC 4 cut(s) 436, 1099, 1424, 3418
TseI GCWGC 5 cut(s) 790, 1672, 1721, 2216, 3118
Tsp45I GTSAC 4 cut(s) 436, 1099, 1424, 3418
TspGWI ACGGA 2 cut(s) 901, 1564
TspMI CCCGGG 2 cut(s) 836, 2029
Tth111I GACNNNGTC 2 cut(s) 2569, 3008
Van91I CCANNNNNTGG 3 cut(s) 1103, 2988, 3223
VneI GTGCAC 2 cut(s) 649, 831
VpaK11BI GGWCC 6 cut(s) 254, 414, 1034, 2045, 2571, 3747
VspI ATTAAT 1 cut(s) 2957
XagI CCTNNNNNAGG 1 cut(s) 3742
XapI RAATTY 8 cut(s) 99, 996, 1262, 1588, 1616, 1948, 3128, 4022
XbaI TCTAGA 1 cut(s) 2899
XceI RCATGY 4 cut(s) 616, 1781, 3461, 3486
XcmI CCANNNNNNNNNTGG 1 cut(s) 1104
XhoI CTCGAG 1 cut(s) 168
XmaI CCCGGG 2 cut(s) 836, 2029
XmiI GTMKAC 1 cut(s) 809
XmnI GAANNNNTTC 5 cut(s) 999, 2651, 2755, 3496, 3691
XspI CTAG 4 cut(s) 12, 1976, 2417, 2900
ZrmI AGTACT 3 cut(s) 547, 901, 3382
Zsp2I ATGCAT 1 cut(s) 1926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.