Rorug04G0366500

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000223
Physical Location & Seq
Reverse (-)
53790097 .. 53792446
2350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0366500.1

Sequence Viewer

Length: 1314 bp
ATGGTTACAACTTCTCCTCCTCCAAAGGAAGCTCTTTCAGACAACAAATGGAAGGAGGAGGCAGACACCACGCGCCGAGCCAAATGGTGGTACTCCACCTTCCACACTGTCACCGCCATGATAGGCGCCGGTGTCCTCAGCCTACCATATGCCATGGCCTACTTAGGATGGGGTCCAGGGACAATGGTACTGGCAGTCTCTTGGTGCATGACCTTGAACACAATGTGGCAGATGATACAACTCCATGAATGTGTTCCAGGGGTTCGCTTCGACCGATACATAGACCTTGGTCGACACGCCTTCGGTCCTAAACTCGGGCCATGGATCGTGCTTCCGCAGCAGTTAATTGTCCAAGTTGGGTGTGACATAGTGTACATGGTCACTGGGGGAAAGTGTCTGAAGCAGTTTTTGGAGATGGCATGTTCCAGTTGCACACCAGTCAAGCAATCCTACTGGATTTTGATCTTTGGTTCCATTCATTTCGTCCTCTCCCAGCTTCCCAATTTCAACTCTGTCGCTGGTGTTTCACTAGCAGCAGCTATCATGTCACTAAGTTATTCAACAATAGCTTGGGCTGGTTGCTTAAGTAAAGGCCAGGTCGACAATGTTAGCTATGCATACAAGAAAACTAGCTCAGCTGATTACATGTTCCGGGTGTTCAATTCCCTTGGTCAAATCTCGTTTGCATTTGCCGGACATGCTGTGGCTCTTGAAATTCAGGCCACAATTCCATCGACTCCAGAGAGGCCTTCAAGAATACCGATGTGGAAAGGTGCCGTCGGAGCCTATTTTATCAATGCAATTTGCTATTTCCCGGTGGCCCTCATCGGTTACTGGGCTTTTGGGCAAGATGTTGATGATAATGTGCTAGTGGATCTCAAGAGACCTGCTTGGCTCATTGCATCTGCAAATTTAATGGTTGTTGTCCATGTAATTGGCAGCTATCAGGTTTATGCTATGCCAGTTTTTGACCTGCTAGAGAGGATGATGATGAAAAAACTGAACTTCCCACCTGGAGTGGCACTTAGACTAGTTGCTAGATCAGCTTATGTTGCATTCACATTGTTTGTCGGAGTCACCTTCCCTTTCTTTGGAGACCTTCTTGGTTTCTTCGGCGGATTTGGTTTTGCCCCGACTTCATACTTTCTTCCTAGTATAATGTGGCTGATTATCAAGAAACCAAAGAGATTCAGCACCAACTGGTTCATCAACTGGGTTTCCATTTTCATTGGAGTGTTCATTATGTTGGCCTCCACAGTCGGTGGTTTGAGGAACATCATCACTGATGCATCCACATATCGTTTCTACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

437

Amino Acids

48.7

Weight (kDa)

9.2

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 26 - 421 4.7e-99 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 28 - 162 8.4e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 895, 981
AccB1I GGYRCC 2 cut(s) 125, 773
AccB7I CCANNNNNTGG 1 cut(s) 87
AccI GTMKAC 2 cut(s) 292, 600
AccII CGCG 1 cut(s) 73
AciI CCGC 3 cut(s) 114, 335, 1116
AclWI GGATC 2 cut(s) 332, 882
AcsI RAATTY 2 cut(s) 714, 910
AcuI CTGAAG 1 cut(s) 419
AcyI GRCGYC 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 225
AfaI GTAC 3 cut(s) 92, 189, 374
AfiI CCNNNNNNNGG 3 cut(s) 87, 314, 1091
AflII CTTAAG 1 cut(s) 583
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 6 cut(s) 217, 508, 561, 661, 713, 753
AhlI ACTAGT 1 cut(s) 1030
AjnI CCWGG 4 cut(s) 175, 256, 594, 1012
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 9 cut(s) 32, 496, 539, 569, 612, 633, 638, 942, 1046
AluI AGCT 9 cut(s) 32, 496, 539, 569, 612, 633, 638, 942, 1046
Alw26I GTCTC 3 cut(s) 202, 877, 1089
AlwI GGATC 2 cut(s) 332, 882
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 7 cut(s) 156, 317, 592, 720, 746, 819, 1248
ApeKI GCWGC 4 cut(s) 337, 533, 536, 939
ApoI RAATTY 2 cut(s) 714, 910
Asp700I GAANNNNTTC 1 cut(s) 252
AspLEI GCGC 2 cut(s) 75, 128
AspS9I GGNCC 4 cut(s) 173, 305, 317, 820
AsuC2I CCSGG 2 cut(s) 653, 815
AsuHPI GGTGA 2 cut(s) 103, 1069
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 2 cut(s) 173, 305
BanI GGYRCC 2 cut(s) 125, 773
BarI GAAGNNNNNNTAC 2 cut(s) 83, 115
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 4 cut(s) 349, 545, 548, 951
BccI CCATC 3 cut(s) 162, 409, 739
BceAI ACGGC 1 cut(s) 761
BciT130I CCWGG 4 cut(s) 177, 258, 596, 1014
BcnI CCSGG 2 cut(s) 653, 815
BcoDI GTCTC 3 cut(s) 202, 877, 1089
BcuI ACTAGT 1 cut(s) 1030
BfaI CTAG 7 cut(s) 530, 630, 869, 977, 1031, 1038, 1152
BfoI RGCGCY 1 cut(s) 129
BfrI CTTAAG 1 cut(s) 583
BfuAI ACCTGC 2 cut(s) 895, 981
BisI GCNGC 4 cut(s) 338, 534, 537, 940
BlpI GCTNAGC 1 cut(s) 634
BlsI GCNGC 4 cut(s) 339, 535, 538, 941
Bme1390I CCNGG 6 cut(s) 177, 258, 596, 653, 815, 1014
Bme18I GGWCC 2 cut(s) 173, 305
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 4 cut(s) 173, 305, 317, 820
BmiI GGNNCC 5 cut(s) 127, 174, 472, 775, 784
BmrFI CCNGG 6 cut(s) 177, 258, 596, 653, 815, 1014
BmrI ACTGGG 3 cut(s) 393, 844, 1222
BmsI GCATC 3 cut(s) 911, 1276, 1298
BmuI ACTGGG 3 cut(s) 393, 844, 1222
BoxI GACNNNNGTC 1 cut(s) 288
BpmI CTGGAG 2 cut(s) 723, 1035
Bpu10I CCTNAGC 1 cut(s) 137
Bpu1102I GCTNAGC 1 cut(s) 634
BpuEI CTTGAG 1 cut(s) 863
BpuMI CCSGG 2 cut(s) 653, 815
BsaBI GATNNNNATC 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 2 cut(s) 877, 1089
BsaJI CCNNGG 6 cut(s) 153, 176, 257, 286, 320, 667
BsaXI ACNNNNNCTCC 2 cut(s) 28, 31
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 314, 1091
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 9 cut(s) 195, 388, 426, 437, 458, 839, 962, 1205, 1217
Bse3DI GCAATG 1 cut(s) 897
Bse8I GATNNNNATC 1 cut(s) 461
BseBI CCWGG 4 cut(s) 177, 258, 596, 1014
BseDI CCNNGG 6 cut(s) 153, 176, 257, 286, 320, 667
BseGI GGATG 3 cut(s) 173, 990, 1289
BseJI GATNNNNATC 1 cut(s) 461
BseLI CCNNNNNNNGG 3 cut(s) 87, 314, 1091
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 2 cut(s) 151, 648
BseNI ACTGG 9 cut(s) 195, 388, 426, 437, 458, 839, 962, 1205, 1217
BseRI GAGGAG 3 cut(s) 6, 9, 71
BseXI GCAGC 4 cut(s) 349, 545, 548, 951
BseYI CCCAGC 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 7 cut(s) 158, 319, 594, 722, 748, 821, 1250
BshNI GGYRCC 2 cut(s) 125, 773
BsiEI CGRYCG 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 4 cut(s) 129, 652, 693, 815
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 3 cut(s) 87, 314, 1091
BsmAI GTCTC 3 cut(s) 202, 877, 1089
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 1055
BsnI GGCC 7 cut(s) 158, 319, 594, 722, 748, 821, 1250
Bso31I GGTCTC 2 cut(s) 877, 1089
BsoBI CYCGRG 1 cut(s) 314
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 4 cut(s) 324, 462, 874, 1040
Bsp1720I GCTNAGC 1 cut(s) 634
Bsp19I CCATGG 2 cut(s) 153, 320
BspACI CCGC 3 cut(s) 114, 335, 1116
BspANI GGCC 7 cut(s) 158, 319, 594, 722, 748, 821, 1250
BspCNI CTCAG 2 cut(s) 150, 647
BspFNI CGCG 1 cut(s) 73
BspLI GGNNCC 5 cut(s) 127, 174, 472, 775, 784
BspMI ACCTGC 2 cut(s) 895, 981
BspPI GGATC 2 cut(s) 332, 882
BspT107I GGYRCC 2 cut(s) 125, 773
BspTI CTTAAG 1 cut(s) 583
BspTNI GGTCTC 2 cut(s) 877, 1089
BsrDI GCAATG 1 cut(s) 897
BsrFI RCCGGY 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 9 cut(s) 195, 388, 426, 437, 458, 839, 962, 1205, 1217
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 6 cut(s) 153, 176, 257, 286, 320, 667
BssMI GATC 4 cut(s) 324, 462, 874, 1040
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 4 cut(s) 153, 286, 320, 667
Bst2UI CCWGG 4 cut(s) 177, 258, 596, 1014
Bst4CI ACNGT 2 cut(s) 109, 1258
BstACI GRCGYC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 583
BstAUI TGTACA 1 cut(s) 372
BstDEI CTNAG 5 cut(s) 137, 163, 551, 634, 1025
BstDSI CCRYGG 2 cut(s) 153, 320
BstF5I GGATG 3 cut(s) 173, 990, 1289
BstFNI CGCG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 2 cut(s) 75, 128
BstKTI GATC 4 cut(s) 327, 465, 877, 1043
BstMAI GTCTC 3 cut(s) 202, 877, 1089
BstMBI GATC 4 cut(s) 324, 462, 874, 1040
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 5 cut(s) 337, 698, 782, 1043, 1052
BstNI CCWGG 4 cut(s) 177, 258, 596, 1014
BstNSI RCATGY 3 cut(s) 423, 649, 701
BstPAI GACNNNNGTC 1 cut(s) 288
BstSCI CCNGG 6 cut(s) 175, 256, 594, 651, 813, 1012
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 4 cut(s) 349, 545, 548, 951
BstX2I RGATCY 1 cut(s) 874
BstXI CCANNNNNNTGG 1 cut(s) 935
BstYI RGATCY 1 cut(s) 874
BsuRI GGCC 7 cut(s) 158, 319, 594, 722, 748, 821, 1250
BtgI CCRYGG 2 cut(s) 153, 320
BtsCI GGATG 3 cut(s) 173, 990, 1289
BtsIMutI CAGTG 3 cut(s) 105, 381, 1281
BveI ACCTGC 2 cut(s) 895, 981
CfoI GCGC 2 cut(s) 75, 128
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 4 cut(s) 173, 305, 317, 820
Csp6I GTAC 3 cut(s) 91, 188, 373
CviQI GTAC 3 cut(s) 91, 188, 373
DdeI CTNAG 5 cut(s) 137, 163, 551, 634, 1025
DinI GGCGCC 1 cut(s) 127
DpnI GATC 4 cut(s) 326, 464, 876, 1042
DpnII GATC 4 cut(s) 324, 462, 874, 1040
DraIII CACNNNGTG 1 cut(s) 225
EciI GGCGGA 1 cut(s) 1131
Eco130I CCWWGG 4 cut(s) 153, 286, 320, 667
Eco147I AGGCCT 1 cut(s) 748
Eco31I GGTCTC 2 cut(s) 877, 1089
Eco47I GGWCC 2 cut(s) 173, 305
Eco57I CTGAAG 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 314
EcoRII CCWGG 4 cut(s) 175, 256, 594, 1012
EcoT14I CCWWGG 4 cut(s) 153, 286, 320, 667
EcoT22I ATGCAT 2 cut(s) 619, 1291
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 4 cut(s) 153, 286, 320, 667
FaqI GGGAC 1 cut(s) 193
FauNDI CATATG 1 cut(s) 148
FblI GTMKAC 2 cut(s) 292, 600
Fnu4HI GCNGC 4 cut(s) 338, 534, 537, 940
FokI GGATG 3 cut(s) 180, 997, 1276
Fsp4HI GCNGC 4 cut(s) 338, 534, 537, 940
FspBI CTAG 7 cut(s) 530, 630, 869, 977, 1031, 1038, 1152
GlaI GCGC 2 cut(s) 74, 127
GluI GCNGC 4 cut(s) 338, 534, 537, 940
GsaI CCCAGC 1 cut(s) 496
GsuI CTGGAG 2 cut(s) 723, 1035
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 7 cut(s) 158, 319, 594, 722, 748, 821, 1250
HapII CCGG 4 cut(s) 129, 652, 693, 815
HhaI GCGC 2 cut(s) 75, 128
Hin1I GRCGYC 1 cut(s) 126
Hin6I GCGC 2 cut(s) 73, 126
HinP1I GCGC 2 cut(s) 73, 126
HincII GTYRAC 2 cut(s) 293, 601
HindII GTYRAC 2 cut(s) 293, 601
HinfI GANTC 3 cut(s) 736, 1074, 1188
HpaII CCGG 4 cut(s) 129, 652, 693, 815
HphI GGTGA 2 cut(s) 103, 1069
Hpy166II GTNNAC 3 cut(s) 293, 373, 601
Hpy188I TCNGA 4 cut(s) 40, 399, 782, 1073
Hpy188III TCNNGA 5 cut(s) 710, 740, 753, 880, 1174
Hpy8I GTNNAC 3 cut(s) 293, 373, 601
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 6 cut(s) 46, 109, 310, 759, 1090, 1109
HpyCH4III ACNGT 2 cut(s) 109, 1258
HpyCH4V TGCA 9 cut(s) 207, 432, 617, 686, 800, 902, 908, 1055, 1289
HpyF10VI GCNNNNNNNGC 5 cut(s) 337, 698, 782, 1043, 1052
HpyF3I CTNAG 5 cut(s) 137, 163, 551, 634, 1025
Hsp92I GRCGYC 1 cut(s) 126
HspAI GCGC 2 cut(s) 73, 126
KasI GGCGCC 1 cut(s) 125
Kzo9I GATC 4 cut(s) 324, 462, 874, 1040
LmnI GCTCC 1 cut(s) 782
Lsp1109I GCAGC 4 cut(s) 349, 545, 548, 951
LweI GCATC 3 cut(s) 911, 1276, 1298
MaeI CTAG 7 cut(s) 530, 630, 869, 977, 1031, 1038, 1152
MaeIII GTNAC 7 cut(s) 4, 109, 362, 379, 546, 830, 1075
MalI GATC 4 cut(s) 326, 464, 876, 1042
MboI GATC 4 cut(s) 324, 462, 874, 1040
MboII GAAGA 2 cut(s) 1102, 1139
MflI RGATCY 1 cut(s) 874
MluCI AATT 8 cut(s) 345, 502, 661, 714, 726, 801, 910, 933
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 2 cut(s) 730, 1083
MmeI TCCRAC 2 cut(s) 760, 1051
Mph1103I ATGCAT 2 cut(s) 619, 1291
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 4 cut(s) 344, 584, 914, 1312
MslI CAYNNNNRTG 3 cut(s) 116, 249, 1232
MspA1I CMGCKG 1 cut(s) 638
MspCI CTTAAG 1 cut(s) 583
MspI CCGG 4 cut(s) 129, 652, 693, 815
MspR9I CCNGG 6 cut(s) 177, 258, 596, 653, 815, 1014
Mva1269I GAATGC 1 cut(s) 1055
MvaI CCWGG 4 cut(s) 177, 258, 596, 1014
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 5 cut(s) 337, 698, 782, 1043, 1052
NarI GGCGCC 1 cut(s) 126
NciI CCSGG 2 cut(s) 653, 815
NcoI CCATGG 2 cut(s) 153, 320
NdeI CATATG 1 cut(s) 148
NdeII GATC 4 cut(s) 324, 462, 874, 1040
NlaIV GGNNCC 5 cut(s) 127, 174, 472, 775, 784
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 5 cut(s) 109, 362, 379, 546, 1075
NsiI ATGCAT 2 cut(s) 619, 1291
NspI RCATGY 3 cut(s) 423, 649, 701
PceI AGGCCT 1 cut(s) 748
PciI ACATGT 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 271
PctI GAATGC 1 cut(s) 1055
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 1188
PflMI CCANNNNNTGG 1 cut(s) 87
PkrI GCNGC 4 cut(s) 339, 535, 538, 941
PleI GAGTC 2 cut(s) 730, 1082
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 2 cut(s) 730, 1082
PscI ACATGT 1 cut(s) 645
PshAI GACNNNNGTC 1 cut(s) 288
Psp6I CCWGG 4 cut(s) 175, 256, 594, 1012
PspFI CCCAGC 1 cut(s) 492
PspGI CCWGG 4 cut(s) 175, 256, 594, 1012
PspN4I GGNNCC 5 cut(s) 127, 174, 472, 775, 784
PspPI GGNCC 4 cut(s) 173, 305, 317, 820
PsuI RGATCY 1 cut(s) 874
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 3 cut(s) 92, 189, 374
RsaNI GTAC 3 cut(s) 91, 188, 373
RseI CAYNNNNRTG 3 cut(s) 116, 249, 1232
SalI GTCGAC 2 cut(s) 291, 599
SaqAI TTAA 4 cut(s) 344, 584, 914, 1312
SatI GCNGC 4 cut(s) 338, 534, 537, 940
Sau3AI GATC 4 cut(s) 324, 462, 874, 1040
Sau96I GGNCC 4 cut(s) 173, 305, 317, 820
SchI GAGTC 2 cut(s) 730, 1083
ScrFI CCNGG 6 cut(s) 177, 258, 596, 653, 815, 1014
SfaNI GCATC 3 cut(s) 911, 1276, 1298
SfoI GGCGCC 1 cut(s) 127
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 2 cut(s) 173, 305
SmiMI CAYNNNNRTG 3 cut(s) 116, 249, 1232
SmlI CTYRAG 2 cut(s) 583, 878
SmoI CTYRAG 2 cut(s) 583, 878
SpeI ACTAGT 1 cut(s) 1030
Sse9I AATT 8 cut(s) 345, 502, 661, 714, 726, 801, 910, 933
SseBI AGGCCT 1 cut(s) 748
SsiI CCGC 3 cut(s) 114, 335, 1116
SspDI GGCGCC 1 cut(s) 125
SspMI CTAG 7 cut(s) 530, 630, 869, 977, 1031, 1038, 1152
StuI AGGCCT 1 cut(s) 748
StyD4I CCNGG 6 cut(s) 175, 256, 594, 651, 813, 1012
StyI CCWWGG 4 cut(s) 153, 286, 320, 667
TaaI ACNGT 2 cut(s) 109, 1258
TaqI TCGA 4 cut(s) 270, 292, 600, 734
TaqII GACCGA 2 cut(s) 288, 293
TasI AATT 8 cut(s) 345, 502, 661, 714, 726, 801, 910, 933
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 1 cut(s) 1188
Tru1I TTAA 4 cut(s) 344, 584, 914, 1312
Tru9I TTAA 4 cut(s) 344, 584, 914, 1312
TscAI CASTG 3 cut(s) 112, 388, 1288
TseFI GTSAC 5 cut(s) 109, 362, 379, 546, 1075
TseI GCWGC 4 cut(s) 337, 533, 536, 939
Tsp45I GTSAC 5 cut(s) 109, 362, 379, 546, 1075
TspDTI ATGAA 7 cut(s) 261, 467, 1007, 1128, 1195, 1216, 1228
TspRI CASTG 3 cut(s) 112, 388, 1288
Van91I CCANNNNNTGG 1 cut(s) 87
Vha464I CTTAAG 1 cut(s) 583
VpaK11BI GGWCC 2 cut(s) 173, 305
XapI RAATTY 2 cut(s) 714, 910
XceI RCATGY 3 cut(s) 423, 649, 701
XmiI GTMKAC 2 cut(s) 292, 600
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 7 cut(s) 530, 630, 869, 977, 1031, 1038, 1152
Zsp2I ATGCAT 2 cut(s) 619, 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.