Rh1AG167300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000223
Physical Location & Seq
Forward (+)
31830404 .. 31830700
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG167300.1

Sequence Viewer

Length: 297 bp
ATGAACTCCCAATCCGCATCACTCATATCGATTGAATCGAAGACCCGAGCGATATCTCGAACCAGAAATGGCACACCGTATTGGAAATCCGAGAGGCAAATCTACATCTACTGGAGCCAAAATGAGACGAGGCAAGGGACTGCGACTAGCAGAGATGAAGCTCTCGTCCATGAGAAGGAGATGATCGCTAACTACTTCCTCTCATTTATTTTCCTCTGCTCACTAACTACTTCTTTGGTTCTTTATGCTAAGGCCACAAAGCAGGAGTGTGGTGGAGTACGAGGGGGTCGCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.16

Weight (kDa)

9.3

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 291
AciI CCGC 1 cut(s) 15
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 35
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 147
BmeT110I CYCGRG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 116
BmsI GCATC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 47
BpmI CTGGAG 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 116
BseCI ATCGAT 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 45
Bsp143I GATC 1 cut(s) 183
Bsp68I TCGCGA 1 cut(s) 291
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 254
BspDI ATCGAT 1 cut(s) 29
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 116
BssMI GATC 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 249
BstFNI CGCG 1 cut(s) 291
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 183
BstUI CGCG 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 47
Bsu15I ATCGAT 1 cut(s) 29
BsuRI GGCC 1 cut(s) 254
BsuTUI ATCGAT 1 cut(s) 29
BtuMI TCGCGA 1 cut(s) 291
ClaI ATCGAT 1 cut(s) 29
Csp6I GTAC 1 cut(s) 278
CviAII CATG 1 cut(s) 170
CviJI RGCY 3 cut(s) 117, 161, 254
CviKI_1 RGCY 3 cut(s) 117, 161, 254
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 1 cut(s) 249
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eco32I GATATC 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 45
EcoRV GATATC 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 1 cut(s) 173
FaiI YATR 3 cut(s) 26, 171, 246
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 169
FspBI CTAG 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 1 cut(s) 254
Hin1II CATG 1 cut(s) 173
HinfI GANTC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 57, 290
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 78
HpyF3I CTNAG 1 cut(s) 249
Hsp92II CATG 1 cut(s) 173
Kzo9I GATC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 3 cut(s) 76, 97, 248
LweI GCATC 1 cut(s) 26
MaeI CTAG 1 cut(s) 147
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 1 cut(s) 52
MnlI CCTC 5 cut(s) 87, 123, 209, 224, 275
MvnI CGCG 1 cut(s) 291
NdeII GATC 1 cut(s) 183
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 1 cut(s) 116
NruI TCGCGA 1 cut(s) 291
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 116
RruI TCGCGA 1 cut(s) 291
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
Sau3AI GATC 1 cut(s) 183
SetI ASST 1 cut(s) 163
SfaNI GCATC 1 cut(s) 26
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 29, 38, 58
TfiI GAWTC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 17, 171
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.