Rroxscaffold_5G00386400

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000223
Physical Location & Seq
Forward (+)
65279255 .. 65290520
11266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386400.1

Sequence Viewer

Length: 7878 bp
ATGGAATGTTCCCACAAGAAAAAGGGTAAAAGACCCAACCTTTTGGCCGATACTGTGTTTTCTTGGTCCCTTGATGACATTTTCAACGAACGTCTCTTCAAGAACAAGGTGGAAAAGATTCCTGAATCATTTCACTCTGTTGAGCATTACTTCGGGTGTTATATGTATCCTTTATTGGAAGAAACACGAGCGCAAGTCCATTCGAGTATGGAAACTATTTACAGAGCACCATTTGCTAAAGTAGTTGCTTTTGAAAAAGCCAAGCCATATGGGACAAAGCTATATAATATCAAGGTTGATTACTGGCGAAACAGGTTCAATGACCGTGGCAAGGAGCCATACAAAACTTTGCCTGGTGATCTTTTTGTTTTAGCAAATGCTAAACCTGAAACTGTTTCAGATTTACAAAGGGTAGGGAGGTCATGGGCTCTTGCATCGGTCACTAAAGTCTCGGAAAATGAGAACAAGGATGACACTACTTCTCTTTATTTTAAAATCAAAGCTTCCAAAGAGCTTGAAGTCGTAAAGAGCACAACACCACTGTTTATGGTTTTTCTAGTCAACTTAATCCCAAATGGAAGAATATGGAAAGCTTTGCACATGTCCAAAAACCTGAAAATTATCAAGGAGGTTCTATGCACTGATTCTGTGGCTCAGAAAAATCTCTGCTCTGAAAAGAACAATGACATTGTGAATAAGAGATTAGTTCAGAGTTTATCATCTGGTTTGAATGAATCCCAGACTGGGACCGTTCTGGCCTGTCTTGAAATGCTGCATTCTCGTGAAAAGTCTTCTGTGGAACTAATTTGGGGTCCTCCTGGTACTGGAAAAACTAAAACTATCGTGACTCTACTTTTAACCCTGCTACAGATGAATTGTAGGACTCTTGTCTGTGCCCCAACAAATGTTGCAATAACTGAAGTTGCTTCTCGCGTTGTGAAGATGGTGACTGAAGTAGAGTCCAATGCTTTGTTTTGTTCTTTGGGAGAAGTTCTTCTATTTGGGAATAAAGAGCGACTCAAAGTTGGCTCAGACATTGAAGAGATATATTTAGATTACCGTCTCAAAAGGCTTGTTGAGTGCTTAGGGCCACGGACTGGTTGGAGGCATTGCTTTGCTTCCATGATAGATTGTCTTGAAGATGGTGTTTCTCACTACCATACTTTTTTGGAAAACGAGTTTACTATTGAGAAGGAACCAAAGGCTATAGGTCAAATGAAAGCAAAAGAAAGCAGAATTGTTGCTAAAGCTGGCAAGGACACATGCAAAACATTTCTGGAATTTATTAGAGACAGATTTGTTACTACCGCATCACCTCTAAGATATTGCCTTTCTATCTTCTGTACCCACATGCCGAAAAATTACATTTCCGTAGATAATTTCCAAAACATGGTTTTGCTTATCAAATTGGTTGACTCCTTTGAATCATTGTTGTTTCAAGTTAATGTTGCTTCTGAAGCACTTGAAGACATTTTCTCACGTTCTGAAGTTGAAGACATATCAGAGACATGTGCTGATAACTCGTTTCTTCTATTCACAAATAGAAGAGAATGCCTTAAAGTCTTACACAATCTATTTGACTCTCTGAGTGAACTTCACCTTCCGGATATTATGAATCAAGAGTCTCTAATGGCATTTTGTTTTCAAAGTGCTTCCTTGATATTTTGCACTGCATCCAGCTCATATAAGTTGCATAAATTGGCAATGGAGCCACTAAGCATTGTGGTTATTGACGAAGCTGCGCAATTGAAAGAGTGTGAATCAACAATCCCCCTTCAACTACCAGGCGTGAAGCAGGCCGTGCTTGTTGGTGATGAATGTCAGTTACCAGCTATAGTGAACAGCATTGTTTCTGATGAAGCTGGTTTTGCAAGAAGCTTGTTTGAGAGATTAAGCTCAGTTGGTCACTCAAAACACCTCCTAAATATGCAGTACAGGATGCATCCATCAATAAGTTTCTTCCCAAATTCTAGTTTCTACAATAACATGATCCTGGATGCTCCAAATCTTAAAAGGAGAAGCCAGGAGAAAAACTATCTTAAAGGGTCAATGTTCGGTCCTTATTCTTTTATCAATGTCATTGGTGGACGAGAAGAGAAGGATGAGGATGGACGTAGTCGAAAGAATATGGTTGAGGTTGCTATTGTTTCACAAATACTGCGGAAAATGTATAAAGAATGGGTTGATTCAAAACAGAATCTCAGTATTGGTATAGTATCTCCATATGCTGCTCAAGTAGTTGCAATCGAGGACAAACTTGGACAGAAGTATAATAATCTTGATGGATTTATAGTGAAGGTGAAGACAGTTGATGGGTTCCAGGGTGGGGAAGAGGACATCATTATATTTTCCACTGTACGATCCAATTGTCAACAGTCACTTGAGTTTATTTCAAAACCGCAAAGAATTAATGTTGCTCTTACAAGGGCTAGGCACTGTTTGTGGATTTTGGGGAATGAAAGAACTCTATGTGATAGTGAGTCTGTTTGGGAGGCCTTGGTCCTTGATGCCAAAAATCGCCAATGCTTTTTCAATGCTGATGAAGACAAGGATTTAGCCCAGGCCATATTAGAGGTGAAGAAACAGTTCGACCAACTAGATGATTTGCTTAATGCTGACAGTGTACTTTTCAGAAATGCTAGATGGAAGGTACTTTTTAGTGATAACTTTTTGAAGTCATTCAAGAAACTGATGTCAGTCCGTTTGAAGAGGTCGGTGCTAAATGTTCTACTAAAGCTTGCCAGTGGCTGGAGACCGAAGATGCAAAATTCAGATATAATCTGTGGCAACTCTTCACTGATCTTGAAGAAATTCAAGGTTGAAGATCTATATATTGTTTGCACAACAGACATAGCAAAGGATTTGAGATACATTCAAGTATTGAAGATTTGGGACATATTGCCTATAGAGGATGTCCCAACATTGGTAAATCGCCTGGACAATATATTAAACAAATATACAGATGATTATATTAATCTCTGCAAGGAAAAATGTCTTGAGGGGTATGTTAAAACCTTCCAGATTATAATACAGATGATTATACAGATAATCAGTGATCTTAGCTTCACTGAAATCCAGAATGATTTAGTTGGTGACACTTCTTATGGTAGAAGTTATGCTGAGAATTCACGTGTCAGCGAAAGTTTGTTACTGATGAAATTTTACTCACTATCATCTGGGGTGGTAAACCACTTGCTGTCTGATCATGAGGGTAGAGAACTGGATCTTCCATTTGAAGTTACAGACCAAGAATTGGAGATTATCTTTTATCAGAGAAGTTCCTTTATAGTTGGACGGTCAGGAACTGGGAAAACCTCAGTTTTAACCATGAAATTATTTCAGAAAGAGCAGTGGCACCAGTTGGCAGTGCGAGGATGCCATATTAGTGAAAGCAGCAAGGTTGAACAGAGTTCTGCAGCCACTGAGGGGAAAGTTCTACACCAGCTTTTCGTGACAGTGAGTCCGAAGCTATGTTATGCTATCAAGCAACATGTTTTACACTTGAAAAGATTTGCATCTGGTAGAAGTCATTCAACTGAAACTGGTTTGATTGATATGATTGATTTTGATGAGGATGAAGCTCAATTTAACGATATCCAAGATTCATTTCATGAAGTTCCTGCTTATTCTTACCCTCTTTTCATCACATTGCATAAGTTCTTGATTATGCTTGATGGAACATTGAGAAACTCATACTTTGAAAGATTCCTTGATGCAACTGAGGTTACTCATGGTCAACTACGAAGTTCAAGATCAATTTCCTTGCAGACTTTTATAAGGACAAAGGAAGTCAGTTATGAGAAGTTTAGTTCATTATACTGGCCGCATTTTAATATCGAGTTAACAAAGAAGCTTGATGCTTCAAGAGTCTTTACAGAGATTATTTCTCATATAAAAGGTGGCCTGGGAGCTATAGAAGCGTGTGATGGTAAATTGAGTCGAGAGGATTATGTTCAACTGTCAGAGAGCCGAGCTTCCAATCTAACCAGCCAAGAGAGAGAAGTTATATATGACATTTTTCAGATGTATGAAAAAATGAAGTTGGAATATGGTGAATTTGATCTTGCTGATTTTGTTACTGATCTTCACCGTCGACTCAGGCATGAAAAGTATGAGGGGGATCATATGGACTTTGTTTATATTGATGAGGTTCAGGATCTCACAATGAGTCAAATTGCCTTGTTTAAATACATGTGCCACAATGTTGAAGAGGGTTTTGTTTTTTCGGGTGATACTGCTCAAACAATTGCAAGGGGTATTGATTTCAGATTTCAAGAATTACGACATCTATTCTACAAGAAATTTGTGTTGGAGTCAAGAAGCAATAAGCACGATGAAAGTAAGGAAAAGGGCCAAATCTCAGAAATTTTTCACTTGACTCAAAACTTTCGTACCCATGCTGGAATCCTCAAGCTATCACAAAGCATTGTTGAACTTCTTTATCATTTTTTCCCCCTTTCCATTGATGTTTTAAAACCTGAAAGCAGTTTGATATATGGGGAAGCTCCAGTATTGCTTGAACCTGGAGAAAATGAAAATGCAATCGTAAAGATATTTGGAAATACTGGAAATATAGTTGGATTTGGTGCTGAGCAGGTAATTTTGGTGCGAGATGATAGTGCTCGAAATGAGATATCAAAACTTGTAGGGAAGCATGCTCTTGTGCTAACCATTGTCGAGTGCAAGGGCCTTGAGTTTCAGGATGTTCTCTTATACAACTTTTTCGGATCATCACCTTCGAGAAATCAATGGAGGGTAATATATGATTACATGAATGAACTAGATTTACTCGACCACACATTACCCAGGGGCTTTCCAAGTTTTAATGTAGCCAAACACAACATATTGTGCTCTGAACTGAAACAACTATATGTGGCTGTTACTCGCACGAGACAGAGATTGTGGATATGTGAGAATTTTGAAGATCTCTCCAAACCAATGTTTGACTACTGGAAGAAGAAGTGTCTTGTGCAAGTTAAGCAACTGGATGATTCCCTTGCACATGCAATGCAAGTTGCAAGCAGTCCCGAGGAGTGGAAGTCACGTGGCATGAAGCTATATCATGAACATAACTACGAGATGGCCACAATGTGCTTTGAAAGAGCCGGTGATGCTTACTGGGAAAGAAGGTCTAAAGCTGCTGGCCTTAAAGCACTCGCTGACCATATGCGAACGTCTAATCCTGAAGAGGCTAAATCTATTCTCAGGGAAGCTGCTGAAATATTTGATGCTATAGGCAAGGCAGATTCTGCGGCGAGATGTTTTTCTGATTTGGGGGAGTATGAAAGAGCTGCTAGGATATACTTGAACAAATGTGGCGAGTCTGAACTGGAGAGAGCCGCGGAATGTTTTTCTCTAGCAGGATGCTATGAGGAGGCTGCAGATGTGTATGCCAAGGGACATTTTTTCTCAGAGTGTCTCACTGTTTGTGGCAAGGGAAAACTATTTGAAATGGGTTTGCAATACATCAATAATTGGAAACAGCATGCAGAAGAAGACAGTGCTATGACTACAAGGGGAAATGGAATAAATAGAATGGAGCATGAGTTTTTAGAGAGCTGTGCACTTCACTATTATAATTTGAATGATAACAGATCCATGATGAAATTTGTTAAAGCTTTTCGTTCTATAATTTTGATGCGAAACTTTTTGAAGAGGTTGGATAACCTTGATGAGCTTTTGTTGTTGGAGGAAGAATTTGGAAATTATCTGGAAGCTGCAAACATCGCACAGCTTAAAGGTGATATTCTACTTGAATCTGATTTCCTTGGAAAGGCAGGTAAGTTCAAAGAGGCCTCACTGCACATACTATTCTACGTACTTGCCGAGTCTCTTTGGTCATCTGGCAGCAAGGGCTGGCCTCTGAAGAAGTTTCCACGACAGGAGGCTCTTTTGGCACAAGCCAAGTCACTTGCCAAGAATGAGACAGACAACTTTTATGAATTGGTTTCCACTGAGGTTGATATTTTATTAAATGGGATGGATAGGTTGGCTATTTTGAAAAATCAAATCAATTCTTCGGAGAGACATAAGAGTATTAGAGGGGAAGTGTTATCAGCTCGAAAAATTTTGGATGCCCATCTTTCTCGAAGAACTGATAAGTATATATGGGAAACAGAATTGATTGGTGATCTTGTACAGCATTCAGAAGAGAAAATATCTAAAAATCAAGTTTCCATCGATTCACTCATCTACTTCTGGAATTCTTGGAAGGAGAAGATTCTTCACATAATTGAATCTGTAGGTTGTTTGGAAACACAAGACTACAAAGGTTATGTAGAGTTTGGTTTTACTTTCTTAGGAGTGTGGAGGCTGTATCATAATCTGAGTCCAGTGTATGTTTTACTCATCTCTGATGCTGATTGGGTTAGAGGTCTGGACAAAAGACATTTCCAAAGTTATGAGAAGTTGGTCTCCATTGATGTTCACCAACTCATTCCAGCTGCTCAAAATTTTTGGTGTTCAGAACTGGTCTCTGTTGGCATTAAGGTTTTGGAAAAGCTTGAAGCACTTTTCAAGTTCCCAGTCAAGAGTCCTGATTCAATATTCTTTCAAAGCAGGGCTCTTACTCTGATCTATGATGTTGGAAAATATCTTTTGGATTCCAAGTGTCTGAAGCAAAGGAATCAAGATACCATGACACTCCAGAAGTTTGTAACCTTTTCGACTGAAAAATATATTACTTGCATATTTCCTTTAGATTGGAGGAATTCAGCAAGAGAGAATATGATTTCTCTTAGAAGAACTGGTGCTTCCCAATCTATGCTGAAACGAATAATAGTTGAATGTATCAGCGGGAAGAACAAGATGTCTTATGGGCAAATTGGAAAGGTCATCATGATCATTCTTGGGTCTGGTAAGCCAAGTAGTGAACTTCACAGCATGATTGTGCAAAAGCTGACCTGCAACCCGCCATGGATGTCATTTGTTGAGACTTTGTGTGAGAAGGATATGGGGCCTTGGAGTCGTAGTGGAGAACCTAAACAGACGTCCGTTTTGTGGCGATTCTATGAAGCATTAGTCGAAACTTATAGTGCAAACTGGAGGGCTCTTCATGACTACATATCACCTGGTTGCTTCTTGTATCTTGTAGAGCGCCTTTTGACTTTGGCCTCTTGCTTTCATGGTTTTGTTATCTCCACGAGTTCAAGTTTTATAGAATGGCTGATATACAAGGATGGAGATACCATCATAAGTTCACCATCCCTGGGAGAGATTGCTGATTTTGTGACTGATGTTGTTCGAGATTGTATTTATAAAAGGGGGAATATGATTGATTGGATTAGAAAAACTGATGCAGATGGGAAGAGTTCTTATCCACTACTCATGATGAGATTGGTTATTCTACTATGTTTGCTTCTTGTGAACTTTGGGAAGTCTGTAGATATGCTTTTTGATATTCTGGGGAAGAACTATGTCACTGGAGTACTGCCCAAGGAATTTGTTGAGGCCCTTAAGAAGGGGAGGAAAGACAGATCTGCGAGTGCCTGTGTGCTAGCTATAGCTACTGCTCTTAAGAAGATTGGTAATCCTTTAGTAATTGCAAGTTTTGGGTTCAATTGTTCAAGGTTCTTATGCACAGATGCCATTTATGTTGACATGGTATTAAACCCGAGCAAGGAGGACGTACTTGGGAAATTCTTCCCTAAACCACCTGTTGTCCCAGCTTCACAAAGCCGAATGAGACCTGTTGAAGGGGAAGGTAATAATCGTTATACTGTTCTATCGGATGCTGACGACACTCACAGTGAAGATGAGGAGATTTGCATTTCCAATGAGTCGAAGCCGATGTGCCCAGAACCTGATGCTGCTTCTGCAACCCATGGGAAGAAAAAGGGCAATCCCAAGAAACACAAGGGGAAAAAGGGCCGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

2625

Amino Acids

299.84

Weight (kDa)

6.55

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 77 - 205 1.1e-63 Domain of unknown function (DUF6469)
AAA_11 PF13086 243 - 615 1.3e-33 AAA domain
AAA_19 PF13245 262 - 612 3.8e-07 AAA domain
AAA_12 PF13087 624 - 820 3.2e-57 AAA domain
UvrD-helicase PF00580 1322 - 1416 6.5e-07 UvrD/REP helicase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 3026, 3776, 5577, 7257
AatII GACGTC 1 cut(s) 6992
Acc16I TGCGCA 1 cut(s) 1743
Acc36I ACCTGC 3 cut(s) 4585, 5768, 6911
AccB1I GGYRCC 1 cut(s) 3354
AccB7I CCANNNNNTGG 4 cut(s) 1097, 1390, 2748, 3253
AccI GTMKAC 1 cut(s) 4093
AccII CGCG 2 cut(s) 933, 5342
AccIII TCCGGA 1 cut(s) 1603
AciI CCGC 9 cut(s) 1308, 2161, 2399, 3824, 5252, 5340, 5342, 6795, 6911
AclWI GGATC 7 cut(s) 1984, 2355, 3231, 4128, 4164, 4735, 5589
AcoI YGGCCR 3 cut(s) 45, 3821, 5082
AcuI CTGAAG 7 cut(s) 939, 972, 1476, 1506, 5205, 5885, 6635
AcvI CACGTG 2 cut(s) 3131, 5045
AcyI GRCGYC 1 cut(s) 6989
AdeI CACNNNGTG 1 cut(s) 5091
AflII CTTAAG 2 cut(s) 7454, 7514
AflIII ACRYGT 5 cut(s) 600, 1508, 3130, 3490, 4191
AhdI GACNNNNNGTC 1 cut(s) 3459
AjuI GAANNNNNNNTTGG 4 cut(s) 3591, 3623, 4292, 4324
AloI GAACNNNNNNTCC 2 cut(s) 5164, 5196
Alw21I GWGCWC 5 cut(s) 229, 533, 4624, 4853, 5566
Alw44I GTGCAC 1 cut(s) 5562
AlwI GGATC 7 cut(s) 1984, 2355, 3231, 4128, 4164, 4735, 5589
AlwNI CAGNNNCTG 5 cut(s) 2748, 3305, 3422, 5249, 7802
Ama87I CYCGRG 2 cut(s) 5027, 7612
Aor13HI TCCGGA 1 cut(s) 1603
ApaLI GTGCAC 1 cut(s) 5562
ArsI GACNNNNNNTTYG 2 cut(s) 6979, 7011
AseI ATTAAT 2 cut(s) 2409, 2973
Asp700I GAANNNNTTC 9 cut(s) 117, 129, 993, 2585, 2678, 2810, 3529, 4368, 7640
AspLEI GCGC 3 cut(s) 193, 1744, 7098
AsuNHI GCTAGC 1 cut(s) 7495
AvaI CYCGRG 2 cut(s) 5027, 7612
AvaII GGWCC 5 cut(s) 66, 747, 812, 2057, 2500
BaeGI GKGCMC 3 cut(s) 898, 5566, 7796
BaeI ACNNNNGTAYC 2 cut(s) 4375, 4408
BalI TGGCCA 1 cut(s) 5084
BanI GGYRCC 1 cut(s) 3354
BanII GRGCYC 3 cut(s) 430, 6565, 7051
BauI CACGAG 4 cut(s) 186, 780, 4888, 7141
BbrPI CACGTG 2 cut(s) 3131, 5045
BbsI GAAGAC 6 cut(s) 783, 1473, 1500, 2309, 2550, 5502
Bbv12I GWGCWC 5 cut(s) 229, 533, 4624, 4853, 5566
BceAI ACGGC 1 cut(s) 1784
BciVI GTATCC 1 cut(s) 177
BclI TGATCA 2 cut(s) 3202, 6840
BfaI CTAG 9 cut(s) 557, 1971, 2430, 2597, 2640, 4781, 5295, 5357, 7496
BfoI RGCGCY 1 cut(s) 7099
BfrI CTTAAG 2 cut(s) 7454, 7514
BfuAI ACCTGC 3 cut(s) 4585, 5768, 6911
BfuI GTATCC 1 cut(s) 177
BglII AGATCT 3 cut(s) 2824, 4924, 7475
BlpI GCTNAGC 1 cut(s) 4590
BmcAI AGTACT 1 cut(s) 7428
Bme18I GGWCC 5 cut(s) 66, 747, 812, 2057, 2500
BmeRI GACNNNNNGTC 1 cut(s) 3459
BmeT110I CYCGRG 2 cut(s) 5027, 7612
BmiI GGNNCC 9 cut(s) 68, 336, 748, 813, 1197, 1710, 2318, 3356, 6957
BmrI ACTGGG 4 cut(s) 753, 3315, 5128, 6518
BmtI GCTAGC 1 cut(s) 7499
BmuI ACTGGG 4 cut(s) 753, 3315, 5128, 6518
BoxI GACNNNNGTC 1 cut(s) 887
BpiI GAAGAC 6 cut(s) 783, 1473, 1500, 2309, 2550, 5502
BpmI CTGGAG 7 cut(s) 2770, 4491, 4545, 5351, 6629, 7063, 7443
Bpu10I CCTNAGC 1 cut(s) 1084
Bpu1102I GCTNAGC 1 cut(s) 4590
BpuEI CTTGAG 5 cut(s) 2217, 2402, 3017, 4394, 4712
Bsa29I ATCGAT 1 cut(s) 6180
BsaAI YACGTR 3 cut(s) 3131, 5045, 5818
BsaBI GATNNNNATC 2 cut(s) 3514, 6078
BsaHI GRCGYC 1 cut(s) 6989
BsaI GGTCTC 4 cut(s) 2746, 6418, 6478, 7678
BsaWI WCCGGW 1 cut(s) 1603
BsaXI ACNNNNNCTCC 6 cut(s) 5024, 5054, 5531, 5561, 6955, 6985
Bse118I RCCGGY 1 cut(s) 5105
Bse3DI GCAATG 4 cut(s) 1108, 1710, 3647, 5013
Bse8I GATNNNNATC 2 cut(s) 3514, 6078
BseAI TCCGGA 1 cut(s) 1603
BseCI ATCGAT 1 cut(s) 6180
BseJI GATNNNNATC 2 cut(s) 3514, 6078
BseMI GCAATG 4 cut(s) 1108, 1710, 3647, 5013
BseRI GAGGAG 3 cut(s) 5045, 5387, 7772
BseSI GKGCMC 3 cut(s) 898, 5566, 7796
BseYI CCCAGC 1 cut(s) 7663
BsgI GTGCAG 1 cut(s) 5786
Bsh1236I CGCG 2 cut(s) 933, 5342
BshNI GGYRCC 1 cut(s) 3354
BshVI ATCGAT 1 cut(s) 6180
BsiHKAI GWGCWC 5 cut(s) 229, 533, 4624, 4853, 5566
BsiHKCI CYCGRG 2 cut(s) 5027, 7612
BsiSI CCGG 3 cut(s) 1604, 5106, 7870
BslFI GGGAC 8 cut(s) 52, 286, 760, 2900, 2906, 5010, 5412, 7646
BsmBI CGTCTC 2 cut(s) 98, 1067
BsmFI GGGAC 8 cut(s) 52, 286, 760, 2900, 2906, 5010, 5412, 7646
BsmI GAATGC 3 cut(s) 775, 1556, 6142
Bso31I GGTCTC 4 cut(s) 2746, 6418, 6478, 7678
BsoBI CYCGRG 2 cut(s) 5027, 7612
Bsp13I TCCGGA 1 cut(s) 1603
Bsp1407I TGTACA 1 cut(s) 6136
Bsp1720I GCTNAGC 1 cut(s) 4590
Bsp19I CCATGG 2 cut(s) 6914, 7822
BspACI CCGC 9 cut(s) 1308, 2161, 2399, 3824, 5252, 5340, 5342, 6795, 6911
BspDI ATCGAT 1 cut(s) 6180
BspEI TCCGGA 1 cut(s) 1603
BspFNI CGCG 2 cut(s) 933, 5342
BspHI TCATGA 6 cut(s) 3205, 3610, 5062, 6837, 7054, 7326
BspLI GGNNCC 9 cut(s) 68, 336, 748, 813, 1197, 1710, 2318, 3356, 6957
BspMAI CTGCAG 2 cut(s) 3418, 5383
BspMI ACCTGC 3 cut(s) 4585, 5768, 6911
BspOI GCTAGC 1 cut(s) 7499
BspPI GGATC 7 cut(s) 1984, 2355, 3231, 4128, 4164, 4735, 5589
BspQI GCTCTTC 1 cut(s) 7056
BspT107I GGYRCC 1 cut(s) 3354
BspTI CTTAAG 2 cut(s) 7454, 7514
BspTNI GGTCTC 4 cut(s) 2746, 6418, 6478, 7678
BsrDI GCAATG 4 cut(s) 1108, 1710, 3647, 5013
BsrFI RCCGGY 1 cut(s) 5105
BsrGI TGTACA 1 cut(s) 6136
BssAI RCCGGY 1 cut(s) 5105
BssNI GRCGYC 1 cut(s) 6989
BssSI CACGAG 4 cut(s) 186, 780, 4888, 7141
BssT1I CCWWGG 7 cut(s) 2496, 5394, 5767, 6914, 6959, 7434, 7822
Bst2BI CACGAG 4 cut(s) 186, 780, 4888, 7141
BstACI GRCGYC 1 cut(s) 6989
BstAFI CTTAAG 2 cut(s) 7454, 7514
BstAPI GCANNNNNTGC 3 cut(s) 233, 1801, 5249
BstAUI TGTACA 1 cut(s) 6136
BstBAI YACGTR 3 cut(s) 3131, 5045, 5818
BstC8I GCNNGC 9 cut(s) 1252, 1797, 2739, 4656, 5020, 5143, 5487, 5858, 7497
BstDSI CCRYGG 5 cut(s) 325, 1091, 5340, 6914, 7822
BstENI CCTNNNNNAGG 3 cut(s) 5771, 7457, 7692
BstFNI CGCG 2 cut(s) 933, 5342
BstH2I RGCGCY 1 cut(s) 7099
BstHHI GCGC 3 cut(s) 193, 1744, 7098
BstNSI RCATGY 9 cut(s) 604, 1266, 1354, 1512, 3494, 4195, 4658, 5006, 5489
BstPAI GACNNNNGTC 1 cut(s) 887
BstSLI GKGCMC 3 cut(s) 898, 5566, 7796
BstSNI TACGTA 1 cut(s) 5818
BstUI CGCG 2 cut(s) 933, 5342
BstV2I GAAGAC 6 cut(s) 783, 1473, 1500, 2309, 2550, 5502
BstX2I RGATCY 6 cut(s) 2824, 3223, 4156, 4924, 5594, 7475
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 6 cut(s) 2824, 3223, 4156, 4924, 5594, 7475
Bsu15I ATCGAT 1 cut(s) 6180
BsuI GTATCC 1 cut(s) 177
BsuTUI ATCGAT 1 cut(s) 6180
BtgI CCRYGG 5 cut(s) 325, 1091, 5340, 6914, 7822
BtgZI GCGATG 1 cut(s) 5710
BtsI GCAGTG 4 cut(s) 1668, 3356, 3372, 5798
BveI ACCTGC 3 cut(s) 4585, 5768, 6911
Cac8I GCNNGC 9 cut(s) 1252, 1797, 2739, 4656, 5020, 5143, 5487, 5858, 7497
CaiI CAGNNNCTG 5 cut(s) 2748, 3305, 3422, 5249, 7802
CciI TCATGA 6 cut(s) 3205, 3610, 5062, 6837, 7054, 7326
CfoI GCGC 3 cut(s) 193, 1744, 7098
Cfr10I RCCGGY 1 cut(s) 5105
Cfr42I CCGCGG 1 cut(s) 5343
ClaI ATCGAT 1 cut(s) 6180
CsiI ACCWGGT 1 cut(s) 7069
CspCI CAANNNNNGTGG 4 cut(s) 307, 342, 5941, 5976
DraI TTTAAA 3 cut(s) 493, 4186, 4473
DraIII CACNNNGTG 1 cut(s) 5091
DriI GACNNNNNGTC 1 cut(s) 3459
EaeI YGGCCR 3 cut(s) 45, 3821, 5082
Eam1105I GACNNNNNGTC 1 cut(s) 3459
Eco105I TACGTA 1 cut(s) 5818
Eco130I CCWWGG 7 cut(s) 2496, 5394, 5767, 6914, 6959, 7434, 7822
Eco147I AGGCCT 2 cut(s) 2495, 5795
Eco24I GRGCYC 3 cut(s) 430, 6565, 7051
Eco31I GGTCTC 4 cut(s) 2746, 6418, 6478, 7678
Eco32I GATATC 2 cut(s) 3595, 4635
Eco47I GGWCC 5 cut(s) 66, 747, 812, 2057, 2500
Eco57I CTGAAG 7 cut(s) 939, 972, 1476, 1506, 5205, 5885, 6635
Eco72I CACGTG 2 cut(s) 3131, 5045
Eco88I CYCGRG 2 cut(s) 5027, 7612
EcoNI CCTNNNNNAGG 3 cut(s) 5771, 7457, 7692
EcoO109I RGGNCCY 4 cut(s) 812, 4687, 6956, 7450
EcoRI GAATTC 3 cut(s) 3124, 6202, 6709
EcoRV GATATC 2 cut(s) 3595, 4635
EcoT14I CCWWGG 7 cut(s) 2496, 5394, 5767, 6914, 6959, 7434, 7822
EcoT22I ATGCAT 1 cut(s) 1944
EcoT38I GRGCYC 3 cut(s) 430, 6565, 7051
ErhI CCWWGG 7 cut(s) 2496, 5394, 5767, 6914, 6959, 7434, 7822
Esp3I CGTCTC 2 cut(s) 98, 1067
FaqI GGGAC 8 cut(s) 52, 286, 760, 2900, 2906, 5010, 5412, 7646
FauI CCCGC 2 cut(s) 6788, 6918
FauNDI CATATG 4 cut(s) 268, 2224, 4125, 5166
FbaI TGATCA 2 cut(s) 3202, 6840
FblI GTMKAC 1 cut(s) 4093
FriOI GRGCYC 3 cut(s) 430, 6565, 7051
FspBI CTAG 9 cut(s) 557, 1971, 2430, 2597, 2640, 4781, 5295, 5357, 7496
FspI TGCGCA 1 cut(s) 1743
GlaI GCGC 3 cut(s) 192, 1743, 7097
GsaI CCCAGC 1 cut(s) 7667
GsuI CTGGAG 7 cut(s) 2770, 4491, 4545, 5351, 6629, 7063, 7443
HaeII RGCGCY 1 cut(s) 7099
HapII CCGG 3 cut(s) 1604, 5106, 7870
HhaI GCGC 3 cut(s) 193, 1744, 7098
Hin1I GRCGYC 1 cut(s) 6989
Hin6I GCGC 3 cut(s) 191, 1742, 7096
HinP1I GCGC 3 cut(s) 191, 1742, 7096
HincII GTYRAC 7 cut(s) 562, 1414, 2372, 3737, 3843, 4094, 7597
HindII GTYRAC 7 cut(s) 562, 1414, 2372, 3737, 3843, 4094, 7597
HindIII AAGCTT 7 cut(s) 501, 591, 1876, 2735, 3851, 5616, 6500
HpaI GTTAAC 1 cut(s) 3843
HpaII CCGG 3 cut(s) 1604, 5106, 7870
Hpy99I CGWCG 1 cut(s) 4095
HpyCH4IV ACGT 9 cut(s) 91, 1480, 2113, 3130, 5044, 5174, 5817, 6989, 7626
HpySE526I ACGT 9 cut(s) 91, 1480, 2113, 3130, 5044, 5174, 5817, 6989, 7626
Hsp92I GRCGYC 1 cut(s) 6989
HspAI GCGC 3 cut(s) 191, 1742, 7096
Kpn2I TCCGGA 1 cut(s) 1603
Ksp22I TGATCA 2 cut(s) 3202, 6840
KspAI GTTAAC 1 cut(s) 3843
KspI CCGCGG 1 cut(s) 5343
LguI GCTCTTC 1 cut(s) 7056
LmnI GCTCC 6 cut(s) 334, 1708, 2005, 3908, 4510, 5539
MabI ACCWGGT 1 cut(s) 7069
MaeI CTAG 9 cut(s) 557, 1971, 2430, 2597, 2640, 4781, 5295, 5357, 7496
MaeII ACGT 9 cut(s) 91, 1480, 2113, 3130, 5044, 5174, 5817, 6989, 7626
MfeI CAATTG 4 cut(s) 1745, 2365, 4245, 7558
MflI RGATCY 6 cut(s) 2824, 3223, 4156, 4924, 5594, 7475
MlsI TGGCCA 1 cut(s) 5084
MluNI TGGCCA 1 cut(s) 5084
MmeI TCCRAC 8 cut(s) 1082, 3271, 4023, 4290, 4558, 5640, 5667, 6565
Mox20I TGGCCA 1 cut(s) 5084
Mph1103I ATGCAT 1 cut(s) 1944
MroI TCCGGA 1 cut(s) 1603
MroXI GAANNNNTTC 9 cut(s) 117, 129, 993, 2585, 2678, 2810, 3529, 4368, 7640
MscI TGGCCA 1 cut(s) 5084
MslI CAYNNNNRTG 3 cut(s) 780, 3384, 6887
Msp20I TGGCCA 1 cut(s) 5084
MspA1I CMGCKG 3 cut(s) 5342, 6443, 6795
MspCI CTTAAG 2 cut(s) 7454, 7514
MspI CCGG 3 cut(s) 1604, 5106, 7870
MunI CAATTG 4 cut(s) 1745, 2365, 4245, 7558
Mva1269I GAATGC 3 cut(s) 775, 1556, 6142
MvnI CGCG 2 cut(s) 933, 5342
NcoI CCATGG 2 cut(s) 6914, 7822
NdeI CATATG 4 cut(s) 268, 2224, 4125, 5166
NheI GCTAGC 1 cut(s) 7495
NlaIV GGNNCC 9 cut(s) 68, 336, 748, 813, 1197, 1710, 2318, 3356, 6957
NmeAIII GCCGAG 2 cut(s) 3995, 5851
NsbI TGCGCA 1 cut(s) 1743
NsiI ATGCAT 1 cut(s) 1944
NspI RCATGY 9 cut(s) 604, 1266, 1354, 1512, 3494, 4195, 4658, 5006, 5489
PaeI GCATGC 2 cut(s) 4658, 5489
PagI TCATGA 6 cut(s) 3205, 3610, 5062, 6837, 7054, 7326
PasI CCCWGGG 2 cut(s) 4806, 7207
PceI AGGCCT 2 cut(s) 2495, 5795
PciI ACATGT 4 cut(s) 600, 1508, 3490, 4191
PciSI GCTCTTC 1 cut(s) 7056
PcsI WCGNNNNNNNCGW 1 cut(s) 5823
PctI GAATGC 3 cut(s) 775, 1556, 6142
PdmI GAANNNNTTC 9 cut(s) 117, 129, 993, 2585, 2678, 2810, 3529, 4368, 7640
PflFI GACNNNGTC 1 cut(s) 2115
PflMI CCANNNNNTGG 4 cut(s) 1097, 1390, 2748, 3253
PfoI TCCNGGA 1 cut(s) 1992
PmaCI CACGTG 2 cut(s) 3131, 5045
PmlI CACGTG 2 cut(s) 3131, 5045
Ppu21I YACGTR 3 cut(s) 3131, 5045, 5818
PpuMI RGGWCCY 1 cut(s) 812
PscI ACATGT 4 cut(s) 600, 1508, 3490, 4191
PshAI GACNNNNGTC 1 cut(s) 887
PshBI ATTAAT 2 cut(s) 2409, 2973
PsiI TTATAA 4 cut(s) 3026, 3776, 5577, 7257
Psp5II RGGWCCY 1 cut(s) 812
PspCI CACGTG 2 cut(s) 3131, 5045
PspFI CCCAGC 1 cut(s) 7663
PspN4I GGNNCC 9 cut(s) 68, 336, 748, 813, 1197, 1710, 2318, 3356, 6957
PspPPI RGGWCCY 1 cut(s) 812
PsrI GAACNNNNNNTAC 2 cut(s) 4770, 4802
PstI CTGCAG 2 cut(s) 3418, 5383
PstNI CAGNNNCTG 5 cut(s) 2748, 3305, 3422, 5249, 7802
PsuI RGATCY 6 cut(s) 2824, 3223, 4156, 4924, 5594, 7475
PsyI GACNNNGTC 1 cut(s) 2115
PvuII CAGCTG 1 cut(s) 6443
RseI CAYNNNNRTG 3 cut(s) 780, 3384, 6887
SacII CCGCGG 1 cut(s) 5343
SalI GTCGAC 1 cut(s) 4092
SapI GCTCTTC 1 cut(s) 7056
ScaI AGTACT 1 cut(s) 7428
SexAI ACCWGGT 1 cut(s) 7069
Sfr303I CCGCGG 1 cut(s) 5343
SgrBI CCGCGG 1 cut(s) 5343
SinI GGWCC 5 cut(s) 66, 747, 812, 2057, 2500
SmiMI CAYNNNNRTG 3 cut(s) 780, 3384, 6887
SmlI CTYRAG 7 cut(s) 2232, 2381, 2996, 4409, 4691, 7454, 7514
SmoI CTYRAG 7 cut(s) 2232, 2381, 2996, 4409, 4691, 7454, 7514
SnaBI TACGTA 1 cut(s) 5818
SphI GCATGC 2 cut(s) 4658, 5489
SseBI AGGCCT 2 cut(s) 2495, 5795
SsiI CCGC 9 cut(s) 1308, 2161, 2399, 3824, 5252, 5340, 5342, 6795, 6911
SspI AATATT 2 cut(s) 5223, 6546
SspMI CTAG 9 cut(s) 557, 1971, 2430, 2597, 2640, 4781, 5295, 5357, 7496
StuI AGGCCT 2 cut(s) 2495, 5795
StyI CCWWGG 7 cut(s) 2496, 5394, 5767, 6914, 6959, 7434, 7822
TaiI ACGT 9 cut(s) 94, 1483, 2116, 3133, 5047, 5177, 5820, 6992, 7629
TaqII GACCGA 3 cut(s) 427, 2045, 2770
TatI WGTACW 4 cut(s) 1932, 2623, 6136, 7426
TauI GCSGC 3 cut(s) 3826, 5255, 5342
TspGWI ACGGA 4 cut(s) 1108, 1360, 2690, 6982
Tth111I GACNNNGTC 1 cut(s) 2115
Van91I CCANNNNNTGG 4 cut(s) 1097, 1390, 2748, 3253
Vha464I CTTAAG 2 cut(s) 7454, 7514
VneI GTGCAC 1 cut(s) 5562
VpaK11BI GGWCC 5 cut(s) 66, 747, 812, 2057, 2500
VspI ATTAAT 2 cut(s) 2409, 2973
XagI CCTNNNNNAGG 3 cut(s) 5771, 7457, 7692
XceI RCATGY 9 cut(s) 604, 1266, 1354, 1512, 3494, 4195, 4658, 5006, 5489
XcmI CCANNNNNNNNNTGG 1 cut(s) 1098
XmiI GTMKAC 1 cut(s) 4093
XmnI GAANNNNTTC 9 cut(s) 117, 129, 993, 2585, 2678, 2810, 3529, 4368, 7640
XspI CTAG 9 cut(s) 557, 1971, 2430, 2597, 2640, 4781, 5295, 5357, 7496
ZraI GACGTC 1 cut(s) 6990
ZrmI AGTACT 1 cut(s) 7428
Zsp2I ATGCAT 1 cut(s) 1944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.