RLG00000005701

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000223
Physical Location & Seq
Reverse (-)
936537 .. 947726
11190 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005701

Sequence Viewer

Length: 7881 bp
ATGGAAGGTTCACACAAGAAAAAGGGTGAAAGACCCAACCTTTTGGCCGATACTGTGTTTTCTTGGTCCCTTGATGACATTTTCAACGAACGTCTCTTCAAGAACAAGGTGGAAAAGATTCCTGAATCATTTCACTCTGTTGAGCATTACTTCGGGTGTTATATGTATCCTTTATTGGAAGAAACACGAGCGCAAGTTCATTCGAGTATGGAAACTATTTACAGAGCACCATTTGCTAAAGTAGTTGCTTTTGAAAAAGCCAAGCCATATGGGACAAAGCTGTATAATATCAAGGTTGATTACTGGCGAAACAGGTTCAATGACCGTGGCAAGGAGCCATACAAAACTTTGCCTGGGGATCTTTTTGTTTTAGCAAATGCTAAACCTGAAACTGTTTCAGATTTACAAAGGGTAGGGAGGTCATGGGCTTTTGCATCGGTCACTAAAGTCTCAGAAAATGAGAACAAGGATGGCACTGCTTCTCTTTATTTTAAAGTCAAGGCTTCCAAAGAGCTTGAAGTCATAAAGAGCACAACACCACTGTTTTTGGTTTTTCTAGTCAACTTAATCCCAAATGGAAGAATATGGAAATCTTTGCACATGTCCAAAAACCTGAAGATTATCAAGGAGGTTCTGTGCACTGATTCTGTGGGTCAGAAAAGTCTCTGCTCTGAAAAGAACAATGACATTGTGAATAAGAGATTAGTTCAGAGTTTATCATCTGGTTTGAATGAATCCCAGACTGGGACCGTTCTGGCCTGTCTTGAAATGCTGCATTCTCGTGAAAAGTCTGCTGTGGAACTAATTTGGGGTCCTCCTGGTACTGGAAAAACTAAAACTATCGTGACTCTACTTTTAACCCTGCTACAGATGAATTGTAGGACTCTTGTCTGTGCCCCAACAAATGTTGCAATAACTGAAGTTGCTTCTCGCGTTGTGAAGATGGTGACTGAAGTAGAGTCCAGTGCTTTGTTTTGTTCTTTGGGAGAAGTTCTTCTATTTGGGAATAAGGAGCGACTCAAAGTTGGCTCAGACATTGAAGAGATATATTTAGATTACCGTCTCAAAAGGCTTGTTGAGTGCTTAGGGCCACGGACTGGTTGGAGGTATTGCTTTGCTTCCATGATAGATTGTCTTGAAGATGGTGTTTCTCACTACCATATTTTTTTGGAAAACGAGTTTACTATTGAGAAGGAACCAAAGGCTATAGGTCAAATGAAAGCGAAGGAAAGCAGAATTGTCGCTAAAGCTGGCAAGGACACATGCAAAACATTTCTGGAATTTATTAGAGACAGATTTGTTACTACTGCATCACCTCTAAGATATTGCCTTTCTATCTTCTGTACCCACATGCCGAAAAATTACATTTCTGTAGATAATTTCCAAAACATGGTTTTGCTTATCAAATTGGTTGACTCCTTTGAATCATTGTTGTTTCAAGTTAATGTTGCTTCTGAAGCACTTGAAGACATTTTCTCATGTTCCGAAGTTGAAGACATATCAGAGACATGTGCTGATAACTCGCTTCTTCTATTCACAAATAGAAGAGAATGCCTTAAAGTCTTACACAATCTATTTGACTCTCTGAGTGAACTTCACCTTCCGGATTTTATTAATCAAGAGTCTCTAATGGCATTTTGTTTTCAAAGTGCTTCCTTGATATTTTGCACTGCATCCAGCTCATATAAGTTGCATAAATTGGCAATGGAGCCACTAAGAATTGTGGTTATTGACGAAGCTGCGCAATTGAAAGAGTGTGAATCAACAATCCCCCTTCAACTACCAGGCGTGAAGCATGCCGTGCTTGTTGGTGATGAATGTCAGTTACCAGCTATAGTGAACAGCATTGTTTCTGATGAAGCTGGTTTTGCAAGAAGCTTGTTTGAGAGGTTAAGCTCAGTTGGTCACTCAAAACACCTCCTAAATATGCAGTACAGGATGCATCCATCAATAAGTTTCTTCCCAAATTCTAGTTTCTACAATAACATGATCCTGGATGCTCCAAATCTTAAAAGGAGAAGCCAGGAGAAAAACTATCTTAAAGGGTCAATGTTTGGTCCTTATGCTTTTATCAATGTCATTGGTGGACGAGAAGAGAAGGATGAGGATGGACGTAGTCGAAAGAATATGGTTGAGGTTGCTATTGTTTCACAAATACTGCGGAAGCTGTATAAAGAATGGGTTGATTCAAAACAGAATCTCAGTATTGGTATAGTATCTCCATATGCTGCTCAAGTAGTTGCAATTGAGGACAAACTTGGACAGAAGTATAATAATCTTGATGGATTTATAGTGAAGGTGAAGACAGTTGATGGGTTCCAGGGTGGGGAAGAGGACATCATTATATTTTCCACTGTACGATCCAATTGTCAACAGTCACTTGAGTTTATTTCAAAACCGCAAAGAATTAATGTTGCTCTTACAAGGGCTAGGCACTGTCTGTGGATTTTGGGGAATGAAAGAACTCTATGTGATAGTGAGTCTGTTTGGGAGGCCTTGGTCCTTGATGCCAAAAATCGCCAATGCTTTTTCAATGCTGATGAAGACAAGGATTTAGCCAAGGCCATATTAGAGGTGAAGAAACAGTTCGACCAACTAGATGATTTGCTTAATGCTGACAGTGTACTTTTCAGAAGTGCTAGATGGAAGGTACTTTTTAGTGATAACTTTTTGAAGTCATTCAAGAAACTGATGTCAGTCCGTTTGAAGAGGTCAGTGCTAAATGTTCTACTAAAGCTTGCCAGTGGCTGGAGACCGAAGACGCAAAATTCAGATATAATCTGTGGCAACTCTTCACTGATCTTGAAGAAATTCAAGGTTGAAGATCTATATATTGTTTGCACAACAGACATAGCAAAGGAATTGAGATACGTTCAAGTATTGAAGATTTGGGACATATTGCCTATAGAGGATGTCCCAACGTTGGTAAATCGCCTGGACAATATATTAAACAAATATACAGATGATTATATTAATCTCTGCAAGGAGAAATGTCTTGAGGGTGATTTGGAAGTTCCAAAGAGCTGGCCAAGTTCTTTGGAATTCATTCGGTTTAAGGATCTTAGCTTCACTGAAATCCAGAATGATTTAGTTGGTGGCACTTCTCATGGTAGAAGTTATGCTGAGAATTCACGTGTCAGCGAAAGTTTGTTACTGATGAAATTTTACTCACTATCATCTGGGGTGGTAAACCACTTGCTGTCTGATCATGAGGGTAGAGAAGTGGATCTTCCGTTTGAAGTTACAGACCAAGAATTGGAGATCATCCTTTATCAGAGAAGTTCCTTTATAGTTGGACGGTCAGGAACTGGGAAAACTACAGTTTTAACCATGAAATTATTTCAGAAAGAGCAGTGGCACCAGTTGGCAGTGCGAGGATGCCATATTAGTGAAAGCAGAAATGTTGAACAGAGTTCTGCAGCCATGGAGGGGAAAGTTCTACACCAGCTTTTCGTGACAGTGAGTCCCAAGCTATGTTATGCCATCAAGCAACATGTTTTACACTTGAAAAGATTTGCATCTGGTAGAAGTCATTCAACTGAAACCGGTTTGATTGATATGATTGATTTTGATGAGGATGAAGCTCAATTTAACGATATCCAAGATTCATTTCATGAAGTTCCTGCCCATTCTTACCCTCTTTTCATCACATTGCATAAGTTCTTGATTATGCTTGATGGAACATTGAGAAACTCATACTTTGAAAGATTCCTTGATGCAACTGAGGTTACTCATGGTCAACTACGAAGTTCAAGATCAATTGCCTTGCAGACTTTTATAAGGACAAAGGAAGTCAGTTATGAGAAGTTTAGTTCATTATACTGGCCGCATTTTAATACCGAGTTAACAAAGAAGCTTGATGCTTCAAGAGTCTTTACAGAGATTATTTCTCATATAAAAGGTGGCCTGGGAGCTCTAGAAGCGTGTGATGGTAAATTGAGTCGAGAGGATTATGTTCAACTGTCAGAGAGCCGAGCTTCCAATCTAACCAGCCAGGAGAGAGAAGTTATATATGACATTTTTCAGATGTATGAAAAAATGAAGTTGGAATATGGTGAATTTGATCTTGCTGATTTTGTTACTGATCTTCACCGTCGACTCAGGCATGAAAAGTATGAGGGGGATCATATGGACTTTGTTTATATTGATGAGGTTCAGGATCTCACAATGAGTCAAATTGCCTTGTTTAAACACATGTGCCACAATGTTGAAGAGGGTTTTGTTTTTTCGGGTGATACTGCTCAAACAATTGCAAGGGGTATTGATTTCAGATTTCAAGAATTACGACATCTATTCTACAAGAAATTTGTGTTGGAGTCAAGATGCAATAAGCACGATGAAAGTAAGGAAAAGGGCCAAATCTCAGAAATTTTTCACTTGACTCAAAACTTTCGTACCCATGCTGGAATCCTCAAGCTATCACAAAGCATTGTTGAACTTCTTTATCATTTTTTCCCCCTTTCCATTGATGTTTTAAAACCTGAAAGCAGTTTGATATTTGGGGAAGCTCCAGTATTGCTTGAGTCTGGAGAAAATGAAAATGCAATCGTAAAGATATTTGGAAATACTGGAAATATAGTTGGATTTGGTGCTGAGCAGGTAATTTTGGTGCGAGATGATAGTGCTCGAAATGAGATATCAAAACTTGTAGGGAAGCATGCTCTTGTGCTAACCATTGTCGAGTGCAAGGGCCTTGAGTTTCAGGATGTTCTCTTATACAACTTTTTCGGATCATCACCTTCAAGAAATCAATGGAGGGTAATATATGATTACATGAATGAACTAGATTTACTCGACCACACATTACCCAGGGGCTTTCCAAGTTTTAATGTAGCCAAACACAACATATTGTGCTCTGAACTGAAACAACTATATGTGGCTGTTACTCGCACGAGACAGAGATTGTGGATATGTGAGAATTTTGAAGATCTCTCCAAACCAATGTTTGACTATTGGAAGAAGAAGTGTCTTGTGCAAGTTAAGCAACTGGATGATTCCCTTGCACATGCAATGCAAGTTGCAAGCAGTCCAGAGGAGTGGAAGTCACGTGGCATGAAGCTATATCATGAACATAACTACGAAATGGCCACAATGTGCTTTGAAAGAGCAGGTGATGCTTACTGGGAAAGAAGGTCTAAAGCTGCTGGCCTTAAAGCACTCGCTGATCATATGCGAACGTCAAATCCTGAAGAGGCTAAATCTATTCTCAGGGAAGCTGCTGAAATATTTGATGCTATAGGCAAGGCAGATTCTGCGGCGAGATGTTTTTCTGATTTGGGGGAGTATGAAAGAGCTGCTAGGATATACTTGAACAAATGTGGTGAGTCTGAACTGGAGAGAGCCGCAGAATGTTTTTCTCTAGCAGGATGCTATGAGGAGGCTGCAGATGTGTATGCCAAGGGAAATTTTTTCTCAGAGTGTCTCACTGTTTGTGGCAAGGGAAGACTATTTGAAATGGGTTTGCAATACATCAATAATTGGAAACAGCATGGAGAAGAGGACAGTGCTATGACTACAAGGGGAAATGGAATAAATAGAATGGAGCATGAGTTTTTAGAGAGCTGTGCACTTCACTATTGTAATTTGAATGATAACAGATCCATGATGAAATTTGTTAAAGCTTTTCATTCTATAATTTTGATGCGAAACTTTTTGAAGAGGTTGGATAACCTTGATGAGCTTTTGTTGTTGGAGGAAGAATTTGGAAATTATCTGGAAGCTGCAAACATCGCACAGCTTAAAGGTGATATTCTACTTGAATCTGATTTCCTTGGAAAGGCAGGTAAGTTCAAAGAGGCCTCACTGCACATACTATTCTATGTACTTGCCGAGTCTCTTTGGTCATCTGGCAGCAAGGGCTGGCCTCTGAAGAAGTTTCCACGACAGGAGGCTCTTTTGGCACAAGCCAAGTCACTTGCCAAGAATGAGACAGACAACTTTTATGAATTGGTTTCCACTGAGGTTGATATTTTATTAAATGGGATGGATAGGTTGGCTGTTTTGAAAAATCAAATCAATTCTTCTGAGAGACATAAGAGTATTAGAGGGGAAGTGTTGTCAGCTAGAAAAATTTTGGATGCCCATCTTTCTCGAAGAACTGATAAGTATATATGGGAAACAGAATTGATTGGTGATCTTGTACAGCATTCAGAAGAGAAAATATCTAAAAATCAAGTTTCCATCGATTCACTCATCTACTTCTGGAATTCTTGGAAGGAGAAGATTCTTCACATAATTGAATCTGTAGGTTGTTTGGAAACACAAGACTACAAAGGTTATGTAGAGTTTGGTTTTACTTTCTTAGGAGTCTGGAGGCTGTATCATAATCTGAGTCCAGTGTATGTTTTACTCATCTCTGATGCTGATTGGGTTAGAGGTCTGGACAAAAGACATTTCCAAAGTTATGAGAAGTTGGTCTCCATTGATGTTCACCAACTCATTCCAGCTGCTCAAAATTTTTGGTGTTCAGAACTGGTCTCTGTTGGCATTAAGGTTTTGGAAAAGCTTGAAGCACTTTTCAAGTTCCCAGTCAAGAGTCCTGATTCAATTTTCTTTCAAAGCAGGGCTCTTACTCTGATCTATGATGTTGGAAAATATCTTTTGGATTCCAAGTGTCTGAAGCAAAGGAATCAAGATACCATGACACTACAGAAGTTTGTAAGCTTTTCAACTGAAAAATATATTACTTTCATATTTCCTTTAGATTGGAGGAATTCAGCAAGAGAGAACATGATTTCTCTTAGAAGAACTAATGCTTCCCAATCTATGCTGAAACAAGTAATAGTTGAATGTATCAGCGGGAAGAACAAGATGTCTTATGGGCAAATTGGAAAGGTCATCATGATCATTCTTGGGTCTGGTAAGCCAAGTAGTGAACTTCACAGCATGATTGTGCAAAAGCTGACCTGCAACCCGCCATGGATGTCATTCGTTGAGACTTTGTGTGAGAAGGATATGGGACCTTGGAGTCGTAGTGGAGAACCTAAACAGACGTCCGTTTTGTGGCGATTCTATGAAGCATTAGTCGAAACTTATAGTGCAAACTGGCGGGCTCTTCATGACTACATATCACCTGGTTGCTTCTTGTATCTTGTAGAGCGCCTCTTGACTTTGGCCTCTTGCTTTCATGGTTTTGTTATCTCCACGAGTTCAAGTTTTATAGAATGGCTGATATACAAGGATGGAGATACCATCATAAGCTCACCATCCCTGGGAGAGATTGCTGATTTTGTGACTGATGTTGTTCGAGATTGTATTTATAAAAGGGGGAATATGACTGATTGGATTAGAAAGACTGATGCAGATGGGAAGAGTTCTTATCCGCTACTCATGTTGAGATTGGTTATTCTACTATGCTTGCTTCTTGTGAACTTTGGGAAGTCTTTAGATATGCTCTTTGATATTCTGGGGAAGAACTATGTCATTGGAGTACTGCCCAAGGAATTTGTTGAGGCCCTTAAGAAGGGGAGGAAAGACAGATCTGCTAGTGCCTGTGTGCTAGCTATAGCTACTGCTCTTAAGAAGATTGGTAATCCTTTAGTAATTGCAAGTTTCGGGTTCAATTGCTCAAGGTTCTTATGCACAGATGCCATTTATGTTGACATGGTGTTAAACCCGAGCAAGGAGGACATACTTAGGAAATTGTTCCCTAAACCACCTGTTGTCCCAGCTTCACAAAGCCGAATGAGACCTGTTGAAGGGGAAGGTAATAATCGTTATACTGTTCTGTCGGATGCTGAAGACACTCACAGTGAAGATGAGGAGATTTGCATTTCCAATGAGTCGAAGGCGAAGTGCCCAGAACCTGATGCTGCTTCTGCAACCCATGGGAAGAAAAAGGGCAATCCCAAGAAACACAAGGGGAAAAAGGGCCGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

2627

Amino Acids

299.61

Weight (kDa)

6.57

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 77 - 205 5.7e-63 Domain of unknown function (DUF6469)
AAA_11 PF13086 243 - 615 4.7e-34 AAA domain
AAA_19 PF13245 263 - 612 4.9e-07 AAA domain
AAA_12 PF13087 624 - 820 9.4e-58 AAA domain
UvrD-helicase PF00580 1322 - 1417 5.6e-07 UvrD/REP helicase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3779, 7260
AarI CACCTGC 1 cut(s) 5099
AasI GACNNNNNNGTC 1 cut(s) 6966
AatII GACGTC 1 cut(s) 6995
Acc16I TGCGCA 1 cut(s) 1743
Acc36I ACCTGC 4 cut(s) 4588, 5099, 5771, 6914
AccB1I GGYRCC 1 cut(s) 3357
AccB7I CCANNNNNTGG 4 cut(s) 1097, 1390, 2748, 3256
AccI GTMKAC 1 cut(s) 4096
AccII CGCG 1 cut(s) 933
AccIII TCCGGA 1 cut(s) 1603
AciI CCGC 9 cut(s) 2161, 2399, 3827, 5255, 5343, 6798, 6914, 7048, 7322
AclI AACGTT 1 cut(s) 2921
AclWI GGATC 9 cut(s) 366, 1984, 2355, 3066, 3234, 4131, 4167, 4738, 5592
AcoI YGGCCR 4 cut(s) 45, 3026, 3824, 5085
AcuI CTGAAG 8 cut(s) 635, 939, 972, 1476, 5208, 5888, 6638, 7758
AcvI CACGTG 2 cut(s) 3134, 5048
AcyI GRCGYC 1 cut(s) 6992
AdeI CACNNNGTG 1 cut(s) 5094
AflII CTTAAG 2 cut(s) 7457, 7517
AflIII ACRYGT 5 cut(s) 600, 1508, 3133, 3493, 4194
AgeI ACCGGT 1 cut(s) 3545
AhdI GACNNNNNGTC 1 cut(s) 3462
AjuI GAANNNNNNNTTGG 4 cut(s) 3594, 3626, 4295, 4327
AloI GAACNNNNNNTCC 2 cut(s) 5167, 5199
Alw21I GWGCWC 7 cut(s) 229, 533, 641, 3916, 4627, 4856, 5569
Alw44I GTGCAC 2 cut(s) 637, 5565
AlwI GGATC 9 cut(s) 366, 1984, 2355, 3066, 3234, 4131, 4167, 4738, 5592
AlwNI CAGNNNCTG 4 cut(s) 2748, 3308, 5252, 7805
Ama87I CYCGRG 1 cut(s) 7615
Aor13HI TCCGGA 1 cut(s) 1603
ApaLI GTGCAC 2 cut(s) 637, 5565
ArsI GACNNNNNNTTYG 2 cut(s) 6982, 7014
AseI ATTAAT 3 cut(s) 1614, 2409, 2973
AsiGI ACCGGT 1 cut(s) 3545
AspLEI GCGC 3 cut(s) 193, 1744, 7101
AsuNHI GCTAGC 1 cut(s) 7498
AvaI CYCGRG 1 cut(s) 7615
AvaII GGWCC 6 cut(s) 66, 747, 812, 2057, 2500, 6959
BaeGI GKGCMC 4 cut(s) 641, 898, 5569, 7799
BaeI ACNNNNGTAYC 2 cut(s) 4378, 4411
BalI TGGCCA 2 cut(s) 3028, 5087
BanI GGYRCC 1 cut(s) 3357
BanII GRGCYC 3 cut(s) 3916, 6568, 7054
BauI CACGAG 4 cut(s) 186, 780, 4891, 7144
BbrPI CACGTG 2 cut(s) 3134, 5048
BbsI GAAGAC 7 cut(s) 1473, 1500, 2309, 2550, 2765, 5449, 7746
Bbv12I GWGCWC 7 cut(s) 229, 533, 641, 3916, 4627, 4856, 5569
BceAI ACGGC 1 cut(s) 1784
BcgI CGANNNNNNTGC 2 cut(s) 1222, 1256
BciVI GTATCC 1 cut(s) 177
BclI TGATCA 3 cut(s) 3205, 5164, 6843
BfoI RGCGCY 1 cut(s) 7102
BfrI CTTAAG 2 cut(s) 7457, 7517
BfuAI ACCTGC 4 cut(s) 4588, 5099, 5771, 6914
BfuI GTATCC 1 cut(s) 177
BglII AGATCT 3 cut(s) 2824, 4927, 7478
BlpI GCTNAGC 1 cut(s) 4593
BmcAI AGTACT 1 cut(s) 7431
Bme18I GGWCC 6 cut(s) 66, 747, 812, 2057, 2500, 6959
BmeRI GACNNNNNGTC 1 cut(s) 3462
BmeT110I CYCGRG 1 cut(s) 7615
BmiI GGNNCC 9 cut(s) 68, 336, 748, 813, 1197, 1710, 2318, 3359, 6960
BmrI ACTGGG 4 cut(s) 753, 3318, 5131, 6521
BmtI GCTAGC 1 cut(s) 7502
BmuI ACTGGG 4 cut(s) 753, 3318, 5131, 6521
BoxI GACNNNNGTC 1 cut(s) 887
BpiI GAAGAC 7 cut(s) 1473, 1500, 2309, 2550, 2765, 5449, 7746
BpmI CTGGAG 5 cut(s) 2770, 4494, 4548, 5354, 6331
Bpu10I CCTNAGC 1 cut(s) 1084
Bpu1102I GCTNAGC 1 cut(s) 4593
BpuEI CTTGAG 7 cut(s) 2217, 2402, 3017, 4397, 4541, 4715, 7552
Bsa29I ATCGAT 1 cut(s) 6183
BsaAI YACGTR 2 cut(s) 3134, 5048
BsaBI GATNNNNATC 2 cut(s) 3517, 6081
BsaHI GRCGYC 1 cut(s) 6992
BsaI GGTCTC 4 cut(s) 2746, 6421, 6481, 7681
BsaWI WCCGGW 2 cut(s) 1603, 3545
BsaXI ACNNNNNCTCC 8 cut(s) 620, 650, 5027, 5057, 5534, 5564, 6958, 6988
Bse118I RCCGGY 1 cut(s) 3545
Bse3DI GCAATG 3 cut(s) 1710, 3650, 5016
Bse8I GATNNNNATC 2 cut(s) 3517, 6081
BseAI TCCGGA 1 cut(s) 1603
BseCI ATCGAT 1 cut(s) 6183
BseJI GATNNNNATC 2 cut(s) 3517, 6081
BseMI GCAATG 3 cut(s) 1710, 3650, 5016
BseRI GAGGAG 3 cut(s) 5048, 5390, 7775
BseSI GKGCMC 4 cut(s) 641, 898, 5569, 7799
BseYI CCCAGC 1 cut(s) 7666
BsgI GTGCAG 1 cut(s) 5789
Bsh1236I CGCG 1 cut(s) 933
BshNI GGYRCC 1 cut(s) 3357
BshTI ACCGGT 1 cut(s) 3545
BshVI ATCGAT 1 cut(s) 6183
BsiHKAI GWGCWC 7 cut(s) 229, 533, 641, 3916, 4627, 4856, 5569
BsiHKCI CYCGRG 1 cut(s) 7615
BsiSI CCGG 2 cut(s) 1604, 3546
BslFI GGGAC 8 cut(s) 52, 286, 760, 2900, 2906, 3450, 6972, 7649
BsmBI CGTCTC 2 cut(s) 98, 1067
BsmFI GGGAC 8 cut(s) 52, 286, 760, 2900, 2906, 3450, 6972, 7649
BsmI GAATGC 3 cut(s) 775, 1556, 6145
Bso31I GGTCTC 4 cut(s) 2746, 6421, 6481, 7681
BsoBI CYCGRG 1 cut(s) 7615
Bsp13I TCCGGA 1 cut(s) 1603
Bsp1407I TGTACA 1 cut(s) 6139
Bsp1720I GCTNAGC 1 cut(s) 4593
Bsp19I CCATGG 3 cut(s) 3423, 6917, 7825
BspACI CCGC 9 cut(s) 2161, 2399, 3827, 5255, 5343, 6798, 6914, 7048, 7322
BspDI ATCGAT 1 cut(s) 6183
BspEI TCCGGA 1 cut(s) 1603
BspFNI CGCG 1 cut(s) 933
BspHI TCATGA 5 cut(s) 3208, 3613, 5065, 6840, 7057
BspLI GGNNCC 9 cut(s) 68, 336, 748, 813, 1197, 1710, 2318, 3359, 6960
BspMAI CTGCAG 2 cut(s) 3421, 5386
BspMI ACCTGC 4 cut(s) 4588, 5099, 5771, 6914
BspOI GCTAGC 1 cut(s) 7502
BspPI GGATC 9 cut(s) 366, 1984, 2355, 3066, 3234, 4131, 4167, 4738, 5592
BspQI GCTCTTC 1 cut(s) 7059
BspT107I GGYRCC 1 cut(s) 3357
BspTI CTTAAG 2 cut(s) 7457, 7517
BspTNI GGTCTC 4 cut(s) 2746, 6421, 6481, 7681
BsrDI GCAATG 3 cut(s) 1710, 3650, 5016
BsrFI RCCGGY 1 cut(s) 3545
BsrGI TGTACA 1 cut(s) 6139
BssAI RCCGGY 1 cut(s) 3545
BssNI GRCGYC 1 cut(s) 6992
BssSI CACGAG 4 cut(s) 186, 780, 4891, 7144
BssT1I CCWWGG 9 cut(s) 2496, 2559, 3423, 5397, 5770, 6917, 6962, 7437, 7825
Bst2BI CACGAG 4 cut(s) 186, 780, 4891, 7144
BstACI GRCGYC 1 cut(s) 6992
BstAFI CTTAAG 2 cut(s) 7457, 7517
BstAPI GCANNNNNTGC 4 cut(s) 233, 1801, 5114, 5252
BstAUI TGTACA 1 cut(s) 6139
BstBAI YACGTR 2 cut(s) 3134, 5048
BstDSI CCRYGG 5 cut(s) 325, 1091, 3423, 6917, 7825
BstENI CCTNNNNNAGG 3 cut(s) 5774, 7460, 7695
BstFNI CGCG 1 cut(s) 933
BstH2I RGCGCY 1 cut(s) 7102
BstHHI GCGC 3 cut(s) 193, 1744, 7101
BstNSI RCATGY 9 cut(s) 604, 1266, 1354, 1512, 1799, 3497, 4198, 4661, 5009
BstPAI GACNNNNGTC 1 cut(s) 887
BstSLI GKGCMC 4 cut(s) 641, 898, 5569, 7799
BstUI CGCG 1 cut(s) 933
BstV2I GAAGAC 7 cut(s) 1473, 1500, 2309, 2550, 2765, 5449, 7746
BstX2I RGATCY 8 cut(s) 358, 2824, 3058, 3226, 4159, 4927, 5597, 7478
BstXI CCANNNNNNTGG 3 cut(s) 43, 3024, 5037
BstYI RGATCY 8 cut(s) 358, 2824, 3058, 3226, 4159, 4927, 5597, 7478
Bsu15I ATCGAT 1 cut(s) 6183
BsuI GTATCC 1 cut(s) 177
BsuTUI ATCGAT 1 cut(s) 6183
BtgI CCRYGG 5 cut(s) 325, 1091, 3423, 6917, 7825
BtgZI GCGATG 1 cut(s) 5713
BtsI GCAGTG 5 cut(s) 474, 1668, 3359, 3375, 5801
BveI ACCTGC 4 cut(s) 4588, 5099, 5771, 6914
CaiI CAGNNNCTG 4 cut(s) 2748, 3308, 5252, 7805
CciI TCATGA 5 cut(s) 3208, 3613, 5065, 6840, 7057
CfoI GCGC 3 cut(s) 193, 1744, 7101
Cfr10I RCCGGY 1 cut(s) 3545
ClaI ATCGAT 1 cut(s) 6183
CseI GACGC 1 cut(s) 2770
CsiI ACCWGGT 1 cut(s) 7072
CspAI ACCGGT 1 cut(s) 3545
CspCI CAANNNNNGTGG 6 cut(s) 307, 342, 528, 563, 5944, 5979
DraI TTTAAA 3 cut(s) 493, 4189, 4476
DraIII CACNNNGTG 1 cut(s) 5094
DrdI GACNNNNNNGTC 1 cut(s) 6966
DriI GACNNNNNGTC 1 cut(s) 3462
DseDI GACNNNNNNGTC 1 cut(s) 6966
EaeI YGGCCR 4 cut(s) 45, 3026, 3824, 5085
Eam1105I GACNNNNNGTC 1 cut(s) 3462
Ecl136II GAGCTC 1 cut(s) 3914
Eco130I CCWWGG 9 cut(s) 2496, 2559, 3423, 5397, 5770, 6917, 6962, 7437, 7825
Eco147I AGGCCT 2 cut(s) 2495, 5798
Eco24I GRGCYC 3 cut(s) 3916, 6568, 7054
Eco31I GGTCTC 4 cut(s) 2746, 6421, 6481, 7681
Eco32I GATATC 2 cut(s) 3598, 4638
Eco47I GGWCC 6 cut(s) 66, 747, 812, 2057, 2500, 6959
Eco53kI GAGCTC 1 cut(s) 3914
Eco57I CTGAAG 8 cut(s) 635, 939, 972, 1476, 5208, 5888, 6638, 7758
Eco72I CACGTG 2 cut(s) 3134, 5048
Eco88I CYCGRG 1 cut(s) 7615
EcoICRI GAGCTC 1 cut(s) 3914
EcoNI CCTNNNNNAGG 3 cut(s) 5774, 7460, 7695
EcoO109I RGGNCCY 4 cut(s) 812, 4690, 6959, 7453
EcoRI GAATTC 4 cut(s) 3041, 3127, 6205, 6712
EcoRV GATATC 2 cut(s) 3598, 4638
EcoT14I CCWWGG 9 cut(s) 2496, 2559, 3423, 5397, 5770, 6917, 6962, 7437, 7825
EcoT22I ATGCAT 1 cut(s) 1944
EcoT38I GRGCYC 3 cut(s) 3916, 6568, 7054
ErhI CCWWGG 9 cut(s) 2496, 2559, 3423, 5397, 5770, 6917, 6962, 7437, 7825
Esp3I CGTCTC 2 cut(s) 98, 1067
FalI AAGNNNNNCTT 2 cut(s) 3213, 3245
FaqI GGGAC 8 cut(s) 52, 286, 760, 2900, 2906, 3450, 6972, 7649
FauI CCCGC 3 cut(s) 6791, 6921, 7041
FauNDI CATATG 4 cut(s) 268, 2224, 4128, 5169
FbaI TGATCA 3 cut(s) 3205, 5164, 6843
FblI GTMKAC 1 cut(s) 4096
FriOI GRGCYC 3 cut(s) 3916, 6568, 7054
FspI TGCGCA 1 cut(s) 1743
GlaI GCGC 3 cut(s) 192, 1743, 7100
GsaI CCCAGC 1 cut(s) 7670
GsuI CTGGAG 5 cut(s) 2770, 4494, 4548, 5354, 6331
HaeII RGCGCY 1 cut(s) 7102
HapII CCGG 2 cut(s) 1604, 3546
HgaI GACGC 1 cut(s) 2770
HhaI GCGC 3 cut(s) 193, 1744, 7101
Hin1I GRCGYC 1 cut(s) 6992
Hin6I GCGC 3 cut(s) 191, 1742, 7099
HinP1I GCGC 3 cut(s) 191, 1742, 7099
HincII GTYRAC 7 cut(s) 562, 1414, 2372, 3740, 3846, 4097, 7600
HindII GTYRAC 7 cut(s) 562, 1414, 2372, 3740, 3846, 4097, 7600
HindIII AAGCTT 6 cut(s) 1876, 2735, 3854, 5619, 6503, 6661
HpaI GTTAAC 1 cut(s) 3846
HpaII CCGG 2 cut(s) 1604, 3546
Hpy99I CGWCG 1 cut(s) 4098
HpyCH4IV ACGT 8 cut(s) 91, 2113, 2871, 2921, 3133, 5047, 5177, 6992
HpySE526I ACGT 8 cut(s) 91, 2113, 2871, 2921, 3133, 5047, 5177, 6992
Hsp92I GRCGYC 1 cut(s) 6992
HspAI GCGC 3 cut(s) 191, 1742, 7099
Kpn2I TCCGGA 1 cut(s) 1603
Ksp22I TGATCA 3 cut(s) 3205, 5164, 6843
KspAI GTTAAC 1 cut(s) 3846
LguI GCTCTTC 1 cut(s) 7059
LmnI GCTCC 7 cut(s) 334, 1012, 1708, 2005, 3911, 4513, 5542
MabI ACCWGGT 1 cut(s) 7072
MaeII ACGT 8 cut(s) 91, 2113, 2871, 2921, 3133, 5047, 5177, 6992
MfeI CAATTG 6 cut(s) 1745, 2244, 2365, 3759, 4248, 7561
MflI RGATCY 8 cut(s) 358, 2824, 3058, 3226, 4159, 4927, 5597, 7478
MlsI TGGCCA 2 cut(s) 3028, 5087
MluNI TGGCCA 2 cut(s) 3028, 5087
MmeI TCCRAC 9 cut(s) 1082, 3274, 4026, 4293, 4561, 5643, 5670, 6568, 7710
Mox20I TGGCCA 2 cut(s) 3028, 5087
Mph1103I ATGCAT 1 cut(s) 1944
MroI TCCGGA 1 cut(s) 1603
MscI TGGCCA 2 cut(s) 3028, 5087
MslI CAYNNNNRTG 3 cut(s) 780, 3387, 6890
Msp20I TGGCCA 2 cut(s) 3028, 5087
MspA1I CMGCKG 2 cut(s) 6446, 6798
MspCI CTTAAG 2 cut(s) 7457, 7517
MspI CCGG 2 cut(s) 1604, 3546
MssI GTTTAAAC 1 cut(s) 4189
MunI CAATTG 6 cut(s) 1745, 2244, 2365, 3759, 4248, 7561
Mva1269I GAATGC 3 cut(s) 775, 1556, 6145
MvnI CGCG 1 cut(s) 933
NcoI CCATGG 3 cut(s) 3423, 6917, 7825
NdeI CATATG 4 cut(s) 268, 2224, 4128, 5169
NheI GCTAGC 1 cut(s) 7498
NlaIV GGNNCC 9 cut(s) 68, 336, 748, 813, 1197, 1710, 2318, 3359, 6960
NmeAIII GCCGAG 2 cut(s) 3998, 5854
NmuCI GTSAC 9 cut(s) 439, 844, 946, 1904, 2376, 3454, 5043, 5910, 7231
NsbI TGCGCA 1 cut(s) 1743
NsiI ATGCAT 1 cut(s) 1944
NspI RCATGY 9 cut(s) 604, 1266, 1354, 1512, 1799, 3497, 4198, 4661, 5009
PaeI GCATGC 2 cut(s) 1799, 4661
PagI TCATGA 5 cut(s) 3208, 3613, 5065, 6840, 7057
PaqCI CACCTGC 1 cut(s) 5099
PasI CCCWGGG 2 cut(s) 4809, 7210
PceI AGGCCT 2 cut(s) 2495, 5798
PciI ACATGT 4 cut(s) 600, 1508, 3493, 4194
PciSI GCTCTTC 1 cut(s) 7059
PctI GAATGC 3 cut(s) 775, 1556, 6145
PflFI GACNNNGTC 1 cut(s) 2115
PflMI CCANNNNNTGG 4 cut(s) 1097, 1390, 2748, 3256
PfoI TCCNGGA 1 cut(s) 1992
PinAI ACCGGT 1 cut(s) 3545
PmaCI CACGTG 2 cut(s) 3134, 5048
PmeI GTTTAAAC 1 cut(s) 4189
PmlI CACGTG 2 cut(s) 3134, 5048
Ppu21I YACGTR 2 cut(s) 3134, 5048
PpuMI RGGWCCY 2 cut(s) 812, 6959
PscI ACATGT 4 cut(s) 600, 1508, 3493, 4194
PshAI GACNNNNGTC 1 cut(s) 887
PshBI ATTAAT 3 cut(s) 1614, 2409, 2973
PsiI TTATAA 2 cut(s) 3779, 7260
Psp124BI GAGCTC 1 cut(s) 3916
Psp1406I AACGTT 1 cut(s) 2921
Psp5II RGGWCCY 2 cut(s) 812, 6959
PspCI CACGTG 2 cut(s) 3134, 5048
PspFI CCCAGC 1 cut(s) 7666
PspN4I GGNNCC 9 cut(s) 68, 336, 748, 813, 1197, 1710, 2318, 3359, 6960
PspPPI RGGWCCY 2 cut(s) 812, 6959
PsrI GAACNNNNNNTAC 2 cut(s) 4773, 4805
PstI CTGCAG 2 cut(s) 3421, 5386
PstNI CAGNNNCTG 4 cut(s) 2748, 3308, 5252, 7805
PsuI RGATCY 8 cut(s) 358, 2824, 3058, 3226, 4159, 4927, 5597, 7478
PsyI GACNNNGTC 1 cut(s) 2115
PvuII CAGCTG 1 cut(s) 6446
RseI CAYNNNNRTG 3 cut(s) 780, 3387, 6890
SacI GAGCTC 1 cut(s) 3916
SalI GTCGAC 1 cut(s) 4095
SapI GCTCTTC 1 cut(s) 7059
ScaI AGTACT 1 cut(s) 7431
SexAI ACCWGGT 1 cut(s) 7072
SinI GGWCC 6 cut(s) 66, 747, 812, 2057, 2500, 6959
SmiMI CAYNNNNRTG 3 cut(s) 780, 3387, 6890
SmlI CTYRAG 9 cut(s) 2232, 2381, 2996, 4412, 4520, 4694, 7457, 7517, 7567
SmoI CTYRAG 9 cut(s) 2232, 2381, 2996, 4412, 4520, 4694, 7457, 7517, 7567
SphI GCATGC 2 cut(s) 1799, 4661
SseBI AGGCCT 2 cut(s) 2495, 5798
SsiI CCGC 9 cut(s) 2161, 2399, 3827, 5255, 5343, 6798, 6914, 7048, 7322
SspI AATATT 1 cut(s) 5226
SstI GAGCTC 1 cut(s) 3916
StuI AGGCCT 2 cut(s) 2495, 5798
StyI CCWWGG 9 cut(s) 2496, 2559, 3423, 5397, 5770, 6917, 6962, 7437, 7825
TaiI ACGT 8 cut(s) 94, 2116, 2874, 2924, 3136, 5050, 5180, 6995
TaqII GACCGA 2 cut(s) 427, 2770
TatI WGTACW 5 cut(s) 1932, 2623, 5821, 6139, 7429
TauI GCSGC 3 cut(s) 3829, 5258, 5345
TseFI GTSAC 9 cut(s) 439, 844, 946, 1904, 2376, 3454, 5043, 5910, 7231
Tsp45I GTSAC 9 cut(s) 439, 844, 946, 1904, 2376, 3454, 5043, 5910, 7231
TspGWI ACGGA 4 cut(s) 1108, 2690, 3222, 6985
Tth111I GACNNNGTC 1 cut(s) 2115
Van91I CCANNNNNTGG 4 cut(s) 1097, 1390, 2748, 3256
Vha464I CTTAAG 2 cut(s) 7457, 7517
VneI GTGCAC 2 cut(s) 637, 5565
VpaK11BI GGWCC 6 cut(s) 66, 747, 812, 2057, 2500, 6959
VspI ATTAAT 3 cut(s) 1614, 2409, 2973
XagI CCTNNNNNAGG 3 cut(s) 5774, 7460, 7695
XbaI TCTAGA 1 cut(s) 3916
XceI RCATGY 9 cut(s) 604, 1266, 1354, 1512, 1799, 3497, 4198, 4661, 5009
XcmI CCANNNNNNNNNTGG 1 cut(s) 1098
XmiI GTMKAC 1 cut(s) 4096
ZraI GACGTC 1 cut(s) 6993
ZrmI AGTACT 1 cut(s) 7431
Zsp2I ATGCAT 1 cut(s) 1944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.