Rh4AG427900

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000223
Physical Location & Seq
Forward (+)
72381303 .. 72382795
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG427900.1

Sequence Viewer

Length: 1119 bp
ATGAGCTGGCCAGCCTCCTTGGATGTAATCCGATATAAGGATCTTAGCGTCACTAGTGATTCAGTGGACGACGTGTCTAAGGATAAAAGTTATGTTGAAAATTCAAAGGTCAGTGAGAGTTTTTTGCTGATGAAATTCTACTCCTTATCATCTGGGGTGGTGAATCACTTGCTCTCTGACCGTGAGGGTAGAGAGTTGGTTCTCCCATTTGAAGTTACTGATGAAGAAATGGAGGCCATACTTTACAATAGAAGTGCCTTCATAGTTGGGCGATCAGGCACTGGGAAGACCACTGTTTTAACAATGAAGTTATATCAGAAGGAACAGTATTACAATATGGCAAAGGAAGGATTGTATGCTGTCGAGCAGAGTTCTGGAGGTTCTAATGCAACTGTTTTACGCCAGATATTTGTAACAGTTAGTCCAAAACTCTGTTTTGCCATAAAGCAACATGTATCGAACTTGAGAAGTTTTGCTTCTGGTGTAAGCTGCCATTCAGCTGAATTCGGCTCGATTGGTCTGGATGATTATGATGATGCAGAAGCAGAATTTAGGGATCTCCCAAATTCATTTCTTGATATTCCTTCCGAGCGTTATCCTCTTATTATAACATTCCATAAATTTTTAATGATGCTGGATGGAAGTTTGAGTAATTCATACTTTGAAAGATTCCTTGACAACCTAAAACTGCCTCGAAGGCCACCGCAAAGTTCAAGATCGCTGAAAAGCTTATTGAGGACAAAGGAGGTCAATTACGAAAGGTTTTGTTCATCATATTGGCCTCATTTTAATATGAAGTTAACGAAGCGGCTTGATGCCTTGAGAGTCTTTACTGAGATTATTTCTCATATCAAAGGTGGTCTTAGAGCTTTGGAAGCAGGTAATGGAAAACTCAGTCAGTCGGATTATGTGAAAATGTCTGAGTGCCGGGCTTCCAATTTATGCCAGAAAGAGAGAGAGATAATATATGATATTTTTCAGGTATATGAGAAAATGAAGACAAGAAATGGTGAATATGATATTGCTGATTTTGTAATTGATATTCACCGTCGACTCCAACGTGAGAATATAAGGGTGATGAAATTAATTTTGTGTACATCGATGAGGTACAGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

372

Amino Acids

42.86

Weight (kDa)

8.36

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 608
Acc36I ACCTGC 1 cut(s) 869
AccI GTMKAC 1 cut(s) 1051
AciI CCGC 2 cut(s) 704, 808
AclWI GGATC 2 cut(s) 48, 564
AcoI YGGCCR 1 cut(s) 8
AcsI RAATTY 6 cut(s) 100, 134, 503, 548, 565, 620
AfaI GTAC 2 cut(s) 1096, 1109
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 2 cut(s) 72, 451
AgsI TTSAA 5 cut(s) 98, 105, 212, 665, 714
AhdI GACNNNNNGTC 1 cut(s) 73
AhlI ACTAGT 1 cut(s) 53
AjiI CACGTC 1 cut(s) 73
AluBI AGCT 5 cut(s) 6, 489, 500, 729, 869
AluI AGCT 5 cut(s) 6, 489, 500, 729, 869
AlwI GGATC 2 cut(s) 48, 564
AlwNI CAGNNNCTG 1 cut(s) 281
AoxI GGCC 4 cut(s) 8, 234, 698, 779
ApeKI GCWGC 1 cut(s) 489
ApoI RAATTY 6 cut(s) 100, 134, 503, 548, 565, 620
AseI ATTAAT 1 cut(s) 1085
AsuC2I CCSGG 1 cut(s) 929
AsuHPI GGTGA 4 cut(s) 172, 1022, 1037, 1087
BalI TGGCCA 1 cut(s) 10
BbsI GAAGAC 2 cut(s) 293, 1004
BbvI GCAGC 1 cut(s) 476
BccI CCATC 1 cut(s) 632
BcnI CCSGG 1 cut(s) 929
BcuI ACTAGT 1 cut(s) 53
BfaI CTAG 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 869
BglI GCCNNNNNGGC 1 cut(s) 697
BisI GCNGC 2 cut(s) 490, 809
BlsI GCNGC 2 cut(s) 491, 810
Bme1390I CCNGG 1 cut(s) 929
BmeRI GACNNNNNGTC 1 cut(s) 73
BmgBI CACGTC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 929
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 3 cut(s) 526, 621, 805
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 293, 1004
BpmI CTGGAG 1 cut(s) 396
BpuEI CTTGAG 2 cut(s) 484, 841
BpuMI CCSGG 1 cut(s) 929
Bsa29I ATCGAT 1 cut(s) 1100
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 286
BseCI ATCGAT 1 cut(s) 1100
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 3 cut(s) 28, 529, 643
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 3 cut(s) 825, 907, 912
BseNI ACTGG 1 cut(s) 286
BseXI GCAGC 1 cut(s) 476
BshFI GGCC 4 cut(s) 10, 236, 700, 781
BshVI ATCGAT 1 cut(s) 1100
BsiSI CCGG 1 cut(s) 928
BslI CCNNNNNNNGG 1 cut(s) 37
BsnI GGCC 4 cut(s) 10, 236, 700, 781
Bsp1407I TGTACA 1 cut(s) 1094
Bsp143I GATC 5 cut(s) 40, 272, 556, 716, 1113
BspACI CCGC 2 cut(s) 704, 808
BspANI GGCC 4 cut(s) 10, 236, 700, 781
BspCNI CTCAG 3 cut(s) 826, 906, 913
BspDI ATCGAT 1 cut(s) 1100
BspMI ACCTGC 1 cut(s) 869
BspPI GGATC 2 cut(s) 48, 564
BsrGI TGTACA 1 cut(s) 1094
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 5 cut(s) 40, 272, 556, 716, 1113
BssT1I CCWWGG 1 cut(s) 18
Bst4CI ACNGT 6 cut(s) 182, 295, 327, 394, 418, 1049
BstAUI TGTACA 1 cut(s) 1094
BstC8I GCNNGC 2 cut(s) 8, 12
BstDEI CTNAG 6 cut(s) 44, 78, 834, 863, 893, 921
BstF5I GGATG 3 cut(s) 28, 529, 643
BstKTI GATC 5 cut(s) 43, 275, 559, 719, 1116
BstMBI GATC 5 cut(s) 40, 272, 556, 716, 1113
BstMWI GCNNNNNNNGC 2 cut(s) 697, 875
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 927
BstV1I GCAGC 1 cut(s) 476
BstV2I GAAGAC 2 cut(s) 293, 1004
BstX2I RGATCY 3 cut(s) 40, 556, 1113
BstYI RGATCY 3 cut(s) 40, 556, 1113
Bsu15I ATCGAT 1 cut(s) 1100
BsuRI GGCC 4 cut(s) 10, 236, 700, 781
BsuTUI ATCGAT 1 cut(s) 1100
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 3 cut(s) 28, 529, 643
BtsIMutI CAGTG 4 cut(s) 69, 118, 279, 291
BveI ACCTGC 1 cut(s) 869
Cac8I GCNNGC 2 cut(s) 8, 12
CaiI CAGNNNCTG 1 cut(s) 281
ClaI ATCGAT 1 cut(s) 1100
CseI GACGC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 1095, 1108
CviAII CATG 1 cut(s) 452
CviQI GTAC 2 cut(s) 1095, 1108
DdeI CTNAG 6 cut(s) 44, 78, 834, 863, 893, 921
DpnI GATC 5 cut(s) 42, 274, 558, 718, 1115
DpnII GATC 5 cut(s) 40, 272, 556, 716, 1113
DriI GACNNNNNGTC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 8
Eam1105I GACNNNNNGTC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 455
FalI AAGNNNNNCTT 4 cut(s) 460, 492, 846, 878
FatI CATG 1 cut(s) 451
FblI GTMKAC 1 cut(s) 1051
Fnu4HI GCNGC 2 cut(s) 490, 809
FokI GGATG 3 cut(s) 35, 536, 650
Fsp4HI GCNGC 2 cut(s) 490, 809
FspBI CTAG 1 cut(s) 54
GluI GCNGC 2 cut(s) 490, 809
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 4 cut(s) 10, 236, 700, 781
HapII CCGG 1 cut(s) 928
HgaI GACGC 1 cut(s) 37
Hin1II CATG 1 cut(s) 455
HincII GTYRAC 2 cut(s) 801, 1052
HindII GTYRAC 2 cut(s) 801, 1052
HindIII AAGCTT 1 cut(s) 727
HinfI GANTC 5 cut(s) 59, 163, 669, 825, 1053
HpaI GTTAAC 1 cut(s) 801
HpaII CCGG 1 cut(s) 928
HphI GGTGA 4 cut(s) 172, 1022, 1037, 1087
Hpy166II GTNNAC 4 cut(s) 67, 801, 1052, 1095
Hpy188I TCNGA 6 cut(s) 32, 178, 318, 589, 904, 922
Hpy188III TCNNGA 4 cut(s) 375, 521, 575, 714
Hpy8I GTNNAC 4 cut(s) 67, 801, 1052, 1095
Hpy99I CGWCG 2 cut(s) 74, 1053
HpyAV CCTTC 5 cut(s) 268, 313, 341, 594, 690
HpyCH4III ACNGT 6 cut(s) 182, 295, 327, 394, 418, 1049
HpyCH4IV ACGT 2 cut(s) 72, 1060
HpyCH4V TGCA 2 cut(s) 389, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 697, 875
HpyF3I CTNAG 6 cut(s) 44, 78, 834, 863, 893, 921
HpySE526I ACGT 2 cut(s) 72, 1060
Hsp92II CATG 1 cut(s) 455
KspAI GTTAAC 1 cut(s) 801
Kzo9I GATC 5 cut(s) 40, 272, 556, 716, 1113
Lsp1109I GCAGC 1 cut(s) 476
LweI GCATC 3 cut(s) 526, 621, 805
MaeI CTAG 1 cut(s) 54
MaeII ACGT 2 cut(s) 72, 1060
MaeIII GTNAC 3 cut(s) 49, 214, 412
MalI GATC 5 cut(s) 42, 274, 558, 718, 1115
MboI GATC 5 cut(s) 40, 272, 556, 716, 1113
MboII GAAGA 3 cut(s) 236, 298, 1009
MflI RGATCY 3 cut(s) 40, 556, 1113
MlsI TGGCCA 1 cut(s) 10
MluNI TGGCCA 1 cut(s) 10
MlyI GAGTC 2 cut(s) 834, 1047
MmeI TCCRAC 2 cut(s) 882, 1081
Mox20I TGGCCA 1 cut(s) 10
MscI TGGCCA 1 cut(s) 10
MseI TTAA 5 cut(s) 299, 626, 789, 800, 1085
Msp20I TGGCCA 1 cut(s) 10
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 1 cut(s) 928
MspR9I CCNGG 1 cut(s) 929
MwoI GCNNNNNNNGC 2 cut(s) 697, 875
NciI CCSGG 1 cut(s) 929
NdeII GATC 5 cut(s) 40, 272, 556, 716, 1113
NlaIII CATG 1 cut(s) 455
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 455
PciI ACATGT 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 1057
PfeI GAWTC 3 cut(s) 59, 163, 669
PkrI GCNGC 2 cut(s) 491, 810
PleI GAGTC 2 cut(s) 833, 1047
PpsI GAGTC 2 cut(s) 833, 1047
PscI ACATGT 1 cut(s) 451
PshBI ATTAAT 1 cut(s) 1085
PsiI TTATAA 1 cut(s) 608
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 3 cut(s) 40, 556, 1113
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 2 cut(s) 1096, 1109
RsaNI GTAC 2 cut(s) 1095, 1108
SalI GTCGAC 1 cut(s) 1050
SaqAI TTAA 5 cut(s) 299, 626, 789, 800, 1085
SatI GCNGC 2 cut(s) 490, 809
Sau3AI GATC 5 cut(s) 40, 272, 556, 716, 1113
SchI GAGTC 2 cut(s) 834, 1047
ScrFI CCNGG 1 cut(s) 929
SfaNI GCATC 3 cut(s) 526, 621, 805
SmlI CTYRAG 2 cut(s) 463, 820
SmoI CTYRAG 2 cut(s) 463, 820
SpeI ACTAGT 1 cut(s) 53
SsiI CCGC 2 cut(s) 704, 808
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 927
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 6 cut(s) 182, 295, 327, 394, 418, 1049
TaiI ACGT 2 cut(s) 75, 1063
TaqI TCGA 6 cut(s) 363, 458, 512, 694, 1051, 1100
TatI WGTACW 1 cut(s) 1094
TauI GCSGC 1 cut(s) 811
TfiI GAWTC 3 cut(s) 59, 163, 669
Tru1I TTAA 5 cut(s) 299, 626, 789, 800, 1085
Tru9I TTAA 5 cut(s) 299, 626, 789, 800, 1085
TscAI CASTG 4 cut(s) 69, 118, 286, 298
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 489
Tsp45I GTSAC 1 cut(s) 49
TspRI CASTG 4 cut(s) 69, 118, 286, 298
VspI ATTAAT 1 cut(s) 1085
XapI RAATTY 6 cut(s) 100, 134, 503, 548, 565, 620
XceI RCATGY 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 1051
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.