Rorug04G0366100

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000223
Physical Location & Seq
Reverse (-)
53771489 .. 53773587
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0366100.1

Sequence Viewer

Length: 1479 bp
ATGGCCCAGATGGGTTTTCTCTGCCACTACATTCTCTTTGCTTTCCTTTCTTACTCTGCTCACTCCCGCAACTTACCGGCCACCACCACCACCTCCAAAACGACGGTGCTCGACGTCGCCGCTTCCATTCAGGAGGCCCTAAACGCCATGTCGTCCGAGCACTACTCTTACAGTGGAGCCACTCAGTCATTGAGCCAAGAACACCAAACCTTCTCAGTTTCATCTTCACTCTCTCTTCAACTACATTCCCGAATTTCACTCCACCAGCATTCTCACAACGACTACAAGTCGCTCAGTTTGGCTCGACTCGGGCGCGACTCCGCCCGAGTCAGATCTCTAACCACCAGGTTAGATCTGGCGGTCAGAGGCATTGCCACGTCGGATCTCAAACCCGTCGATACCCAACATTTCGGTACCGACGGGTTCGAGAGCCCCGTGGTTTCGGGGACGAGTGAGGGCAGCGGCGAGTATTTCTCCCGAGTCGGAATCGGCAAACCGCCCAGCCAGGTCTACGTCGTGCTCGACACGGGCAGTGACGTCAGCTGGGTCCAATGCGCGCCGTGCGCCGACTGTTACCAGCAAGCCGACCCCATTTTCGAGCCGGATTCCTCGGCTTCGTTCGCGCCGCTGTCGTGCGAGACCCGGCAGTGCAAGTCCCTCGACGTGTTCGAGTGCCGCAACAACACGTGTCTCTACGAGGTGGCCTACGGCGACGGCTCCTACACCGTCGGCGACTTCGTGACGGAGACGATCAGCATCGGCGGCGAGTCGGTGAAAAACGTTGCCATTGGATGTGGGCATAACAACGAAGGACTGTTTGTCGGTGCGGCTGGCTTGCTCGGGCTCGGCGGGGGGCCGTTGTCGTTTCCTTCCCAGCTCAACGCCACGTCGTTTTCGTACTGCCTCGTCGACCGTGACTCTGACTCGGCCTCGACTCTGGAATTCAACTCGGCAATCCCTCGCAACGCCGTCACGGCCCCGTTACGGCGCAACCCCCAGCTCGACACTTTCTACTACGTCGGACTGACCGGAATCAGCGTCGGCGGCGATATGCTTAAGATTCCCGACACGGCGTTCCTGATAGACGAGAGCGGAAACGGCGGAATCATCATCGACTCCGGCACGGCGGTGACCAGGCTCCAGACGGACACCTACGACGCGCTCCGCAGCGCGTTCGTGAACGGCACGAAGGGGCTGCAGTCCACGAGCGGAGTGGCGCTGTTCGACGCGTGCTACGACCTGTCGTCGAATAAGACCGTGGAAGTACCAACGCTGTCGTTTCACTTCGAGGACGGGAAAGTGTTACCGTTGCCGGCGAAGAATTACCTGATTCCGGTGGACTCGCAGGGGACGTTCTGCTTTGCGTTCGCGCCGACGAGCTCGGCGCTGTCGATAATCGGAAACGTGCAGCAGCAAGGGACACGTGTCAGTTTCGACATAGCTAATTCGGTGGTTGGATTCTCTCCCGACCAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

492

Amino Acids

52.41

Weight (kDa)

4.87

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 156 - 488 5.4e-21 Eukaryotic aspartyl protease
TAXi_N PF14543 157 - 315 8.5e-49 Xylanase inhibitor N-terminal
TAXi_C PF14541 338 - 488 5.3e-38 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 117, 540
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 413
AccBSI CCGCTC 2 cut(s) 1092, 1209
AccI GTMKAC 2 cut(s) 510, 909
AccII CGCG 7 cut(s) 315, 557, 623, 1160, 1172, 1229, 1370
AclI AACGTT 1 cut(s) 780
AclWI GGATC 1 cut(s) 390
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 2 cut(s) 252, 941
AcvI CACGTG 2 cut(s) 687, 1424
AcyI GRCGYC 2 cut(s) 114, 537
AfaI GTAC 3 cut(s) 415, 899, 1266
AfiI CCNNNNNNNGG 2 cut(s) 984, 1333
AflII CTTAAG 1 cut(s) 1055
AflIII ACRYGT 6 cut(s) 663, 684, 686, 1227, 1421, 1423
AgsI TTSAA 2 cut(s) 239, 946
AhdI GACNNNNNGTC 3 cut(s) 286, 818, 1243
AjiI CACGTC 3 cut(s) 378, 664, 888
AjnI CCWGG 3 cut(s) 344, 504, 1133
AleI CACNNNNGTG 1 cut(s) 1127
AluBI AGCT 5 cut(s) 543, 877, 1000, 1380, 1442
AluI AGCT 5 cut(s) 543, 877, 1000, 1380, 1442
Alw21I GWGCWC 4 cut(s) 111, 162, 522, 1382
Alw26I GTCTC 3 cut(s) 632, 695, 740
AlwI GGATC 1 cut(s) 390
Ama87I CYCGRG 4 cut(s) 308, 324, 477, 839
AoxI GGCC 7 cut(s) 3, 78, 135, 702, 854, 927, 975
ApeKI GCWGC 5 cut(s) 459, 1167, 1195, 1408, 1411
ApoI RAATTY 2 cut(s) 252, 941
ArsI GACNNNNNNTTYG 2 cut(s) 578, 610
Asp718I GGTACC 1 cut(s) 413
AspS9I GGNCC 5 cut(s) 4, 136, 547, 854, 976
AsuC2I CCSGG 1 cut(s) 643
AsuHPI GGTGA 2 cut(s) 784, 1141
AvaI CYCGRG 4 cut(s) 308, 324, 477, 839
AvaII GGWCC 1 cut(s) 547
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 3 cut(s) 434, 846, 1382
BauI CACGAG 1 cut(s) 1204
BbrPI CACGTG 2 cut(s) 687, 1424
Bbv12I GWGCWC 4 cut(s) 111, 162, 522, 1382
BbvI GCAGC 5 cut(s) 471, 1179, 1182, 1420, 1423
BccI CCATC 1 cut(s) 4
BcgI CGANNNNNNTGC 6 cut(s) 640, 674, 1156, 1177, 1190, 1211
BciT130I CCWGG 3 cut(s) 346, 506, 1135
BcnI CCSGG 1 cut(s) 643
BcoDI GTCTC 3 cut(s) 632, 695, 740
BfaI CTAG 1 cut(s) 1477
BfmI CTRYAG 1 cut(s) 1196
BfoI RGCGCY 2 cut(s) 1220, 1388
BfrI CTTAAG 1 cut(s) 1055
BglI GCCNNNNNGGC 1 cut(s) 974
BglII AGATCT 2 cut(s) 332, 352
Bme1390I CCNGG 4 cut(s) 346, 506, 643, 1135
Bme18I GGWCC 1 cut(s) 547
BmeRI GACNNNNNGTC 3 cut(s) 286, 818, 1243
BmeT110I CYCGRG 4 cut(s) 308, 324, 477, 839
BmgBI CACGTC 3 cut(s) 378, 664, 888
BmgT120I GGNCC 5 cut(s) 4, 136, 547, 854, 976
BmiI GGNNCC 7 cut(s) 178, 415, 548, 718, 855, 978, 1139
BmrFI CCNGG 4 cut(s) 346, 506, 643, 1135
BmsI GCATC 1 cut(s) 765
BoxI GACNNNNGTC 1 cut(s) 1424
BplI GAGNNNNNCTC 4 cut(s) 149, 181, 458, 490
BpmI CTGGAG 1 cut(s) 1124
BpuMI CCSGG 1 cut(s) 643
BsaAI YACGTR 2 cut(s) 687, 1424
BsaBI GATNNNNATC 1 cut(s) 755
BsaHI GRCGYC 2 cut(s) 114, 537
BsaI GGTCTC 1 cut(s) 632
BsaJI CCNNGG 3 cut(s) 435, 609, 1257
BsaWI WCCGGW 2 cut(s) 1028, 1333
Bsc4I CCNNNNNNNGG 2 cut(s) 984, 1333
Bse118I RCCGGY 2 cut(s) 76, 1312
Bse3DI GCAATG 1 cut(s) 369
Bse8I GATNNNNATC 1 cut(s) 755
BseBI CCWGG 3 cut(s) 346, 506, 1135
BseDI CCNNGG 3 cut(s) 435, 609, 1257
BseGI GGATG 1 cut(s) 797
BseJI GATNNNNATC 1 cut(s) 755
BseLI CCNNNNNNNGG 2 cut(s) 984, 1333
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 3 cut(s) 197, 228, 307
BsePI GCGCGC 1 cut(s) 555
BseXI GCAGC 5 cut(s) 471, 1179, 1182, 1420, 1423
BseYI CCCAGC 4 cut(s) 500, 543, 873, 996
BsgI GTGCAG 1 cut(s) 1427
Bsh1236I CGCG 7 cut(s) 315, 557, 623, 1160, 1172, 1229, 1370
Bsh1285I CGRYCG 1 cut(s) 913
BshFI GGCC 7 cut(s) 5, 80, 137, 704, 856, 929, 977
BshNI GGYRCC 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 913
BsiHKAI GWGCWC 4 cut(s) 111, 162, 522, 1382
BsiHKCI CYCGRG 4 cut(s) 308, 324, 477, 839
BsiSI CCGG 7 cut(s) 77, 602, 643, 1029, 1119, 1313, 1334
BslFI GGGAC 4 cut(s) 460, 640, 1363, 1432
BslI CCNNNNNNNGG 2 cut(s) 984, 1333
BsmAI GTCTC 3 cut(s) 632, 695, 740
BsmBI CGTCTC 1 cut(s) 740
BsmFI GGGAC 4 cut(s) 460, 640, 1363, 1432
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 7 cut(s) 5, 80, 137, 704, 856, 929, 977
Bso31I GGTCTC 1 cut(s) 632
BsoBI CYCGRG 4 cut(s) 308, 324, 477, 839
Bsp1286I GDGCHC 6 cut(s) 111, 162, 434, 522, 846, 1382
Bsp143I GATC 4 cut(s) 332, 352, 382, 750
BspANI GGCC 7 cut(s) 5, 80, 137, 704, 856, 929, 977
BspCNI CTCAG 3 cut(s) 196, 227, 306
BspFNI CGCG 7 cut(s) 315, 557, 623, 1160, 1172, 1229, 1370
BspLI GGNNCC 7 cut(s) 178, 415, 548, 718, 855, 978, 1139
BspMAI CTGCAG 1 cut(s) 1200
BspPI GGATC 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 413
BspTI CTTAAG 1 cut(s) 1055
BspTNI GGTCTC 1 cut(s) 632
BsrBI CCGCTC 2 cut(s) 1092, 1209
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 2 cut(s) 76, 1312
BssAI RCCGGY 2 cut(s) 76, 1312
BssECI CCNNGG 3 cut(s) 435, 609, 1257
BssHII GCGCGC 1 cut(s) 555
BssMI GATC 4 cut(s) 332, 352, 382, 750
BssNI GRCGYC 2 cut(s) 114, 537
BssSI CACGAG 1 cut(s) 1204
Bst2BI CACGAG 1 cut(s) 1204
Bst2UI CCWGG 3 cut(s) 346, 506, 1135
Bst4CI ACNGT 8 cut(s) 106, 173, 572, 727, 816, 914, 1258, 1308
Bst6I CTCTTC 1 cut(s) 240
BstACI GRCGYC 2 cut(s) 114, 537
BstAFI CTTAAG 1 cut(s) 1055
BstBAI YACGTR 2 cut(s) 687, 1424
BstC8I GCNNGC 6 cut(s) 557, 582, 832, 836, 1231, 1314
BstDEI CTNAG 3 cut(s) 183, 214, 293
BstDSI CCRYGG 2 cut(s) 435, 1257
BstEII GGTNACC 1 cut(s) 1129
BstF5I GGATG 1 cut(s) 797
BstFNI CGCG 7 cut(s) 315, 557, 623, 1160, 1172, 1229, 1370
BstH2I RGCGCY 2 cut(s) 1220, 1388
BstKTI GATC 4 cut(s) 335, 355, 385, 753
BstMAI GTCTC 3 cut(s) 632, 695, 740
BstMBI GATC 4 cut(s) 332, 352, 382, 750
BstMCI CGRYCG 1 cut(s) 913
BstMWI GCNNNNNNNGC 8 cut(s) 143, 561, 563, 620, 762, 974, 1044, 1098
BstNI CCWGG 3 cut(s) 346, 506, 1135
BstPAI GACNNNNGTC 1 cut(s) 1424
BstPI GGTNACC 1 cut(s) 1129
BstSCI CCNGG 4 cut(s) 344, 504, 641, 1133
BstSFI CTRYAG 1 cut(s) 1196
BstUI CGCG 7 cut(s) 315, 557, 623, 1160, 1172, 1229, 1370
BstV1I GCAGC 5 cut(s) 471, 1179, 1182, 1420, 1423
BstX2I RGATCY 3 cut(s) 332, 352, 382
BstYI RGATCY 3 cut(s) 332, 352, 382
BsuRI GGCC 7 cut(s) 5, 80, 137, 704, 856, 929, 977
BtgI CCRYGG 2 cut(s) 435, 1257
BtrI CACGTC 3 cut(s) 378, 664, 888
BtsCI GGATG 1 cut(s) 797
BtsI GCAGTG 2 cut(s) 538, 653
BtsIMutI CAGTG 3 cut(s) 178, 538, 653
Cac8I GCNNGC 6 cut(s) 557, 582, 832, 836, 1231, 1314
Cfr10I RCCGGY 2 cut(s) 76, 1312
Cfr13I GGNCC 5 cut(s) 4, 136, 547, 854, 976
CseI GACGC 3 cut(s) 1027, 1166, 1235
CsiI ACCWGGT 1 cut(s) 344
Csp6I GTAC 3 cut(s) 414, 898, 1265
CviAII CATG 1 cut(s) 148
CviQI GTAC 3 cut(s) 414, 898, 1265
DdeI CTNAG 3 cut(s) 183, 214, 293
DpnI GATC 4 cut(s) 334, 354, 384, 752
DpnII GATC 4 cut(s) 332, 352, 382, 750
DriI GACNNNNNGTC 3 cut(s) 286, 818, 1243
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 240
Eam1105I GACNNNNNGTC 3 cut(s) 286, 818, 1243
EarI CTCTTC 1 cut(s) 240
EciI GGCGGA 2 cut(s) 310, 1116
Ecl136II GAGCTC 1 cut(s) 1380
Eco24I GRGCYC 3 cut(s) 434, 846, 1382
Eco31I GGTCTC 1 cut(s) 632
Eco47I GGWCC 1 cut(s) 547
Eco53kI GAGCTC 1 cut(s) 1380
Eco72I CACGTG 2 cut(s) 687, 1424
Eco88I CYCGRG 4 cut(s) 308, 324, 477, 839
Eco91I GGTNACC 1 cut(s) 1129
EcoICRI GAGCTC 1 cut(s) 1380
EcoO109I RGGNCCY 1 cut(s) 136
EcoO65I GGTNACC 1 cut(s) 1129
EcoRI GAATTC 1 cut(s) 941
EcoRII CCWGG 3 cut(s) 344, 504, 1133
EcoT38I GRGCYC 3 cut(s) 434, 846, 1382
Esp3I CGTCTC 1 cut(s) 740
FaeI CATG 1 cut(s) 151
FaiI YATR 4 cut(s) 149, 801, 1052, 1439
FaqI GGGAC 4 cut(s) 460, 640, 1363, 1432
FatI CATG 1 cut(s) 147
FauI CCCGC 2 cut(s) 74, 842
FblI GTMKAC 2 cut(s) 510, 909
FokI GGATG 1 cut(s) 804
FriOI GRGCYC 3 cut(s) 434, 846, 1382
FspBI CTAG 1 cut(s) 1477
GsaI CCCAGC 4 cut(s) 504, 547, 877, 1000
GsuI CTGGAG 1 cut(s) 1124
HaeII RGCGCY 2 cut(s) 1220, 1388
HaeIII GGCC 7 cut(s) 5, 80, 137, 704, 856, 929, 977
HapII CCGG 7 cut(s) 77, 602, 643, 1029, 1119, 1313, 1334
HgaI GACGC 3 cut(s) 1027, 1166, 1235
Hin1I GRCGYC 2 cut(s) 114, 537
Hin1II CATG 1 cut(s) 151
HincII GTYRAC 1 cut(s) 910
HindII GTYRAC 1 cut(s) 910
HpaII CCGG 7 cut(s) 77, 602, 643, 1029, 1119, 1313, 1334
HphI GGTGA 2 cut(s) 784, 1141
Hpy166II GTNNAC 5 cut(s) 511, 910, 1180, 1203, 1339
Hpy188I TCNGA 8 cut(s) 157, 332, 365, 382, 485, 922, 1022, 1400
Hpy8I GTNNAC 5 cut(s) 511, 910, 1180, 1203, 1339
HpyAV CCTTC 4 cut(s) 220, 803, 879, 1183
HpyCH4III ACNGT 8 cut(s) 106, 173, 572, 727, 816, 914, 1258, 1308
HpyCH4V TGCA 3 cut(s) 651, 1198, 1408
HpyF10VI GCNNNNNNNGC 8 cut(s) 143, 561, 563, 620, 762, 974, 1044, 1098
HpyF3I CTNAG 3 cut(s) 183, 214, 293
Hsp92I GRCGYC 2 cut(s) 114, 537
Hsp92II CATG 1 cut(s) 151
KpnI GGTACC 1 cut(s) 417
KroI GCCGGC 1 cut(s) 1312
KroNI GCCGGC 1 cut(s) 1314
Kzo9I GATC 4 cut(s) 332, 352, 382, 750
LmnI GCTCC 4 cut(s) 176, 722, 1143, 1167
Lsp1109I GCAGC 5 cut(s) 471, 1179, 1182, 1420, 1423
LweI GCATC 1 cut(s) 765
MabI ACCWGGT 1 cut(s) 344
MaeI CTAG 1 cut(s) 1477
MaeIII GTNAC 8 cut(s) 533, 572, 739, 914, 970, 981, 1129, 1302
MalI GATC 4 cut(s) 334, 354, 384, 752
MbiI CCGCTC 2 cut(s) 1092, 1209
MboI GATC 4 cut(s) 332, 352, 382, 750
MboII GAAGA 3 cut(s) 216, 227, 1330
MflI RGATCY 3 cut(s) 332, 352, 382
MhlI GDGCHC 6 cut(s) 111, 162, 434, 522, 846, 1382
MluCI AATT 4 cut(s) 252, 941, 1321, 1444
MluI ACGCGT 1 cut(s) 1227
MmeI TCCRAC 4 cut(s) 360, 463, 1000, 1435
MroNI GCCGGC 1 cut(s) 1312
MseI TTAA 1 cut(s) 1056
MslI CAYNNNNRTG 1 cut(s) 1127
MspA1I CMGCKG 3 cut(s) 462, 543, 628
MspCI CTTAAG 1 cut(s) 1055
MspI CCGG 7 cut(s) 77, 602, 643, 1029, 1119, 1313, 1334
MspR9I CCNGG 4 cut(s) 346, 506, 643, 1135
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 3 cut(s) 346, 506, 1135
MvnI CGCG 7 cut(s) 315, 557, 623, 1160, 1172, 1229, 1370
MwoI GCNNNNNNNGC 8 cut(s) 143, 561, 563, 620, 762, 974, 1044, 1098
NaeI GCCGGC 1 cut(s) 1314
NciI CCSGG 1 cut(s) 643
NdeII GATC 4 cut(s) 332, 352, 382, 750
NgoMIV GCCGGC 1 cut(s) 1312
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 7 cut(s) 178, 415, 548, 718, 855, 978, 1139
NmeAIII GCCGAG 5 cut(s) 590, 825, 905, 929, 1361
NmuCI GTSAC 5 cut(s) 533, 739, 914, 970, 1129
OliI CACNNNNGTG 1 cut(s) 1127
PauI GCGCGC 1 cut(s) 555
PcsI WCGNNNNNNNCGW 8 cut(s) 432, 519, 666, 735, 893, 1233, 1349, 1388
PctI GAATGC 1 cut(s) 268
PdiI GCCGGC 1 cut(s) 1314
PfeI GAWTC 7 cut(s) 486, 605, 1032, 1060, 1104, 1330, 1458
PmaCI CACGTG 2 cut(s) 687, 1424
PmlI CACGTG 2 cut(s) 687, 1424
Ppu21I YACGTR 2 cut(s) 687, 1424
PshAI GACNNNNGTC 1 cut(s) 1424
Psp124BI GAGCTC 1 cut(s) 1382
Psp1406I AACGTT 1 cut(s) 780
Psp6I CCWGG 3 cut(s) 344, 504, 1133
PspCI CACGTG 2 cut(s) 687, 1424
PspEI GGTNACC 1 cut(s) 1129
PspFI CCCAGC 4 cut(s) 500, 543, 873, 996
PspGI CCWGG 3 cut(s) 344, 504, 1133
PspN4I GGNNCC 7 cut(s) 178, 415, 548, 718, 855, 978, 1139
PspPI GGNCC 5 cut(s) 4, 136, 547, 854, 976
PstI CTGCAG 1 cut(s) 1200
PsuI RGATCY 3 cut(s) 332, 352, 382
PteI GCGCGC 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 543
RsaI GTAC 3 cut(s) 415, 899, 1266
RsaNI GTAC 3 cut(s) 414, 898, 1265
RseI CAYNNNNRTG 1 cut(s) 1127
SacI GAGCTC 1 cut(s) 1382
SalI GTCGAC 1 cut(s) 908
SaqAI TTAA 1 cut(s) 1056
Sau3AI GATC 4 cut(s) 332, 352, 382, 750
Sau96I GGNCC 5 cut(s) 4, 136, 547, 854, 976
ScrFI CCNGG 4 cut(s) 346, 506, 643, 1135
SduI GDGCHC 6 cut(s) 111, 162, 434, 522, 846, 1382
SexAI ACCWGGT 1 cut(s) 344
SfaNI GCATC 1 cut(s) 765
SfcI CTRYAG 1 cut(s) 1196
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 1127
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
Sse9I AATT 4 cut(s) 252, 941, 1321, 1444
SspMI CTAG 1 cut(s) 1477
SstI GAGCTC 1 cut(s) 1382
StyD4I CCNGG 4 cut(s) 344, 504, 641, 1133
TaaI ACNGT 8 cut(s) 106, 173, 572, 727, 816, 914, 1258, 1308
TasI AATT 4 cut(s) 252, 941, 1321, 1444
TauI GCSGC 7 cut(s) 122, 465, 628, 678, 765, 830, 1047
TfiI GAWTC 7 cut(s) 486, 605, 1032, 1060, 1104, 1330, 1458
Tru1I TTAA 1 cut(s) 1056
Tru9I TTAA 1 cut(s) 1056
TscAI CASTG 3 cut(s) 178, 538, 653
TseFI GTSAC 5 cut(s) 533, 739, 914, 970, 1129
TseI GCWGC 5 cut(s) 459, 1167, 1195, 1408, 1411
Tsp45I GTSAC 5 cut(s) 533, 739, 914, 970, 1129
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 2 cut(s) 758, 1160
TspRI CASTG 3 cut(s) 178, 538, 653
Vha464I CTTAAG 1 cut(s) 1055
VpaK11BI GGWCC 1 cut(s) 547
XapI RAATTY 2 cut(s) 252, 941
XcmI CCANNNNNNNNNTGG 2 cut(s) 352, 1210
XmiI GTMKAC 2 cut(s) 510, 909
XspI CTAG 1 cut(s) 1477
ZraI GACGTC 2 cut(s) 115, 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.