Rroxscaffold_2G00126890

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000223
Physical Location & Seq
Forward (+)
62308778 .. 62320372
11595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00126890.1

Sequence Viewer

Length: 7086 bp
ATGATGGAAGGTTCACACAAGAAAAAGCCTAAAAAACCCAACCTTTTGGCTGAGACTGTGTTTTCTTGGTCCCTTGATAACATTTTCAATGAACGTCTCTTCAAGAACAAGGTGGAAAAGATTCCTGAATCATTTCACTCTGTGGAGCATTACTTCGGGTGTTATCTGTATCCTTTATTGGAAGAAACAAGAGCACAGGTCCATGCAAGTATGGAAACTATTTACAGAGCACCATTTGCTAAAGTAGTTGCTTTTGAAAAAGCGAAGCCATATGGAACAAAGCTATATGATATCAAGGTTGATTATTGGCGAAACAGGTTAAATGACCGTGGCAAAGAGCCATATGAAACCTTGCCAGGTGATCTTTTTGTTTTAGCAAATGCTAAACCTGAAAGTTTTTCAGATTTACAAAGGGTAGGGAGGTCATGGGCTTTTGCATCAGTCACTAAAGTCTCAGAAAATGAGAACAAGGATGAAAGTACTTCTCTTTATTTTAAAATCAAGGCTTCCAAAGAACTTGAAGTTGTAAAGGGTTCGGCATCACTGTTTATGGTTTTTCTAGTGAACTTAATCCCGAATGGAAGAATATGGAAAGCTTTGCACATGTCCAAAAACCTGAACATTATCAAGGAAGTTCTGTGCACTGATTCTGTGGCTCATGAAAATCTCTGCTCTGAAAAGAATAATGACATCGTGAATAAGGGGTTAGTTCAGAGTTTATCAACTGGTCTGAATGAATCGCAAACAGGGACCGTTTTAACCTGCCTTGAAATGCTGCATTGTCGTGAAAAGTCTGCTGTTGAACTAATTTGGGGTCCTCCTGGTACTGGAAAAACTAAAACAATTTCGACTCTACTTGTAACCTTGCTACAGATGAATTGTAGGACTCTTGTTTGTGCCCCAACAAATGTTGCAATAACTGAAGTTGCTTCTCGTGTTGTAAAGATGTTGACTGAAGGAGAGTCCAATTCTTTGTTTTGTTCTTTCGGAGAAGTTCTTCTATTTGGGAATAAGGAGCGACTCAGAGTTGGCTCAGACATTGAAGAGATTTATCTAGATTACCGTCTCAAAAGGCTTGCCGAGTGCTTAGGACCACATACTGGCTGGAGGCATTGCTTTGCTTCCATGATAGATTTTCTTGAAGATTGTGTTTCTCACTACCATAACTTTTTGGTACATGGGTTAACCATAGAGACGGAACCAAAGACCTTAGGTCAAATGAAAGGAAAAGAAAGCAAGTGTGACACTAAAGTTGGCAAGGAGAAGTGCAAATCATTTCTGGAATTTATTAGAGACAGATTTGATTCTAATGCATCACCTCTAAGAAATTGTATTTCTATCTTATGTACCCACATGGCGAAAAATTACATTTGTGGAGATAATGTCCAAAACATGATTATGCTTATCAACTTGGTTGATTCCTTTGAATCATTGTTGTTTCAAGATAATGTTGCTTCTGAAGCACTTGAAGACATTTTCTCTTGTTCTGACATTGACGACATATGGGAGACATATGCTGATAACTCATTTCTTCTATTCATGAATAGAAGAGAATGCCTTAAAGTCTTGCACACTCTCTCATATAAGTTGCATAAATTGGCAATGGAGCCGTTGAGCGTTGTTGTTATTGATGAAGCTGCACAATTGAAAGAGTGTGAATCAACAATCCCCCTTCAACTATGGGGTGTGAAGCATGCTGTTCTTGTTGGGGATGAATGTCAGTTACCAGCTACAGTGAAGAGCATTGTATCTGATGAAGCAGGTTTTGCAAGAAGCTTGTTTGAGAGGTTAAGCTCATTTGGTCGCTCGAAACACCTTCTAAATATGCAATATAGGATGCATCCATCAATAAGTTTCTTCCCAAATTCTAGATTCTACAATAACATGATCCTGGATGCTCCAAATCTTAAAAGTAGAAGCCAGAAGAAACACTATCTTAAAGGGTCAATGTTTGGTCCTTATTCTTTCATCAATGTAATTGGTGGACGAGAAGAGAGGGATGAGGATGGACGCAGTCGAAAGAATATGGTGGAGGTTGCTATTGTTTCACAAATACTGCGGAATCTCTACAAAAAATGGGTTGAATCAAAGCAGAAACTCAGTATTGGTATTGTATCTCCATATGCTGCCCAAGTAGTTGCAATCGAGGACAAACTTGCACAGAAGTATAATAATCTTGATGGCTTTACAGTGAAGGTAAAGACAGTTGACGGGTTCCAGGGTGGGGAAGAGGACATCATTATATTGTCCACTGTACGATCCAATTATCAGCGGTCACTTGAGTTTGTTTCAAAACCGCAAAGAATTAATGTTGCTCTTACAAGGGCTAGGCTGTGGTCCTTGATGCCAAAAATCGCAATTGCTTTTTTTAATGCGGATGAAGATAAGGATCTAGCCAAGGCCATATTGGAGGTTAAGAAACAGTACGACCAACTAGATGATTTGCTTGATGCTGACAGTATACTTTTCAGAAGTGCTAGATGGAAGTCATTCAAGAAACTTGCGTCAGTCCGTTTGAAGAGGTCGGTACTAAATGTTCTACTGAAGCTTGCCAGTGGCTGGAGACCAAAGAAGAAGAGTTCAGAAATGATTTGTGGTAGCTCGTCACTGATCTTGAAAAATTTAAGGGGATGTCCCAACTTTTTGGTCAATCGCCTGGACCGTATAATGAACAAATATACTGATGCTTTCATTAATCTCTGCAAGGAGAAATGTCTTGAGGGTGATTTGGAAATTCCAAAGAGCTGGCCACCTTCTTTGGAATTTTTGCGGTTTAAGGATCTTAGCTTCACTAAAATCCAGAATGATTTTGTTGGTGACACATGTGATGGTAGAAGTTACGCTGAGAATTCACGGGTCAGCGAAAGTTTGTTGCTGATGAAGTTCTACTCGTTATCATCTGGGGTAGTAAACCACTTGCTGTCTGATTGTGAGGGTAGAGAACTGGATCTTCCATTTGAAGTTACGGACCAAGAAATGGAGATTATCCTTCATCATAGAAGTTCCTTCATAGTTGGAAGGTCAGGAACTGGGAAAACCACTGTTTTAACAATGAAATTATTTCAGAAAGAACAGTGGCACCAGTTGGCAGTGCAAGGATGCTATACTAGTCAAAGCAGCAAGGTTGAAAAGAGTCCAGCAGCTACTGAGGATAAACTTCTACACCAGCTTTTCGTTACAGTGAGTCCCAAGCTGTGTTATGCCATCAAGCAACATGTCTTGCACTTGAAAAGTTTTGCATGTGGTGGAAGTCATTCGACTGAAAGCAGTTTGATTGATATGATTGATTTTGATGAGGATGAAGCTCAATTCAATGATATCCAAGATTCATTTCATGAAATTCCTCCCCATTCTTACCCTCTTTTCATCACATTTCATAAGTTCTTGATTATGCTTGATGGAACACTGAGCAACTCATACTTTGAAAGATTCCTTGATGCAACTGAGCTTACTCATGGTCAGCTACGGAATTCAAGATCAGCTGCCTTGCAGACTTTTATAAGAACAAAGGAAGTCAGTTATGAGAGGTTTAGTTCATTATACTGGCCGCATTTTAATACCGATTTAACAAAGAGGCTTGATGCTTCAAGAGTATTTACAGAGATTATTTCCCATATAAAAGGTGGCTTGGGAGCTATAGAAGCATGTGATGGTAAACTCAGTCGAGAGGATTATGTACAACTGTCTGAGATCCGAGTTTCCATTCTAACCAGGCAAGAGAGAGAAGTTATATATGATATTTTTCAGATGTATGAAAAAATGAAGATGGAAAATGGGGAATTTGATCTTGCTGATTTTGTAATTGATCTTCACCATCGACTGATGCATGAAAAGTATGAGGGGGATCATATGGACTTTGTTTATGTTGATGAGGTTCAAGATCTAACAATGAGTCAAATTGCCTTGTTTAAACATATGTGCCACAATGTTGAAGATGGTTTTGTTTTTTCCGGTGACACTGCACAAACAATTGCAAGGGGTATTGATTTCAGGTTTCAAGAATTACGACATCTATTCTACAAGAAGTTTGTGTTGGAGTCAAGAACCAATAAGCACGATGAAACTCCGGTATTGCTTGAATCTGAAGAAAATGAAAATGCAATCGTAAAGATTTTTGGAAATACTGGGAATATAGTTGGATTTGGCGCAGAGCAGGTAATTTTGGTGCGAGATGATAGTGCTCGAAAAGAGATATGCAAATTTATAGGGAAGCATGCTCTTGTTCTAACCATTGTGGAGTGCAAGGGCCTTGAGTTTCAGAGATTGTGGATTTGTGAAAATATTGAAGAGCTGTCCAAACCAATGTTTGACTACTGGAAGAAGAAATGTCTTGTGCAAGTTAAGCAACTGGATGATTCCCTTGCACATGCAATGCAAGTTGCAAGCAGTCCTGAGGAGTGGAAGTCACGTGGCATTAAGCTATATCATGAACACAACTACGAAATGGCCACAATGTGCTTTGAAAGAGCAGGTGACACTTACTGGGAAAGAAGGTCTAAAGCTGCTGGCCTTAAAGCACTTGCTGCCCATATACGAACGTCAAATCCTGAAGAGGCTAAATCTATTCTCAGGGAAGCTGCTGAAATATTTAACGCTATAGGCAAGGCAGATTCTGCTGCCAGATGTTTTTCTGATCTGGGGGAGTATGAAAGAGCTGAGTATGAAAAAGCTGCTAGAATATATTTGAACAAATGTGGGGAGTCTGAACTGAAGAGAGCCGCGGAATGTTTTTCTCTAGCAGGACGATATAAGGAGGCAGCAGATGTGTATGCTAAGGGTAATTTTTTCGCAGAGTGTCTCACTATTTGTGGAAAGGGAAAACTATTTGAACTGGGTTTGCAGTACATCAATAACTGGAAACAGCATGCAGAAGAGGACACTGCTATGACTACAAGAGGAAAAGGAATAAATAGAATGCAGCTTGAATTTTTAGAGAGCTGTGCACTTCACTATTATGATTTGAATGATAACAGATCCATGATTAAGTTTATTAAAGCTTTTCCTTCTATAACTTTGGTGCGGGACTTTTTGAAGAGGTTGGATAGCCTTGATGAGCTTTTGTTGTTGGAGGAAGAATTTGGAAATTATCTGGAAGCTGCAAACATCGCACAGCTTAAAGGAGAAACTCTACTTGAATCTGATTTCCTTGGAAAGGCAGGTAAGTTCAAAGAAGCCTCATTGAAAATAATATTCTACGTACTTGCCATGTCTCTTTGGTCATCTGGCAGCAAGGGCTGGCCTCTGAAGAAGTTTCCACAACAGGAGGCCCTCTTGGCAAAGGCCAAGTCACTTGCCAAGAATGAGACAGACGACTTTCATGAGTTGGTTTGCACTGAGGTTGATATTTTATTAAATAGGCAGGATAACTTGGCTGTGTTGAAAAATCAATGGAATTCTTCTCAAAGACATCAGAGTATCAGAGGGGAAGTTTTATCTGCTCGAAAAATTTTGGATGCACATCTTTCTCAAAGAACTGATAAGTATATATGGGAAAAAGAAGAATTGATTGGTGATCTTGTAAAGGATTCAGAAGAGAAAATATCTAAAAATCAGGTTTCCATTGATTCACTGGTTTACTTTTGGAATTTTTGGAAGGAGAAGATTCTTCACATATATGAATCTGTGCGATGTTTGGGAAACTCCAGAATGCAAAACTCAAGAATGCAAGGGATATGTAGAGTGTTGTTTAACTTGCTTAGACAATTCCAAAATCACGGGAAGTTGGTCTCCATTGATGGTCAGCAGCTCATTTCAGCTGCTCAGAAATATTGGAGTTCAGAAATGATCTCTGTTGGAATGAAGGTTTTGGAAAAGCTTGAAGCTCTTTACAAGTACCCTGTCAAGAATTCTGATTCAGCCTTCTTCCAAAGCAAGTCTCTTACCTTGATCTATGATGTTGCAGTGTATCTTGTGGATTCCAAATGTCTGAAGCCTAGGCATCAAGATACCATAACACTACAGAGGTTTGTAACTTTTTCAACTGAGAGTTTGGTGTCTTACATGTTTCCTTTAGATGGGAGGAACTCATTGAGAGAGAGTATGATTTCTCTTAGAAGAACTGATGCTTTAAAGAATGCTCTGAGACAAGTAGTATTTGAATATACCCGGTCAAAGAACAAGCCGTCTTTTGGGGATATTGGAAGGATTGCAATGATCATTCTCGGGACTGGTAAGCTGAATAGCGAACTATATGCTAAGCTTCTCAAAAAGCTAGACTCCCACTCAAATTTGAGGGCCTTCATTATTTTTCTTTGCGAGACTTTTGGACGTGGGGAAATTATTTACGTGAGTATTATGTTGCCATTCCGTAAGGAAGTTAAAGTCAACGGGAGGGTTATTTATGACTACATGTCACCTGGTTGCTTCTTGTATATTCTGGAACGCCTTCTGATTTGGGCAGCTCTTACTCAAGGTTATGTTCTTACTACAAGTTCTTGCTTTATTGAATGGCTGATATCCCAGGATGAAGATAGCCGCTTAAATTTTATTGTGGAAGAAGATCGATCACCTTCTCTCGAAGGCATCCTGGAACTTACGATTAACGACTGTATATCGGAAAAGAAGGATATGATTGAATGGCTTGAAAAGTCTGACAAAAATTGGAAGAAGCATTATCCGCTATACATCCTTCGATTGGTTGTTCTGTTATGTTTGCTTTATGTGAACTTTGGTTCGTCTTTGGATACACTCTTTGACTTTCTGGGGAGGAGCTATGTCGCTGAGCAGTTACCTTGTGACTTTGTTGACACCCTTAGGAGGGGGTGGAGTCATGATTCCCTTAGGAGGGGGAGGAGTCATAATTCTCCGATTTCAAATGTGAGTGCACTTTCTGCATCTCTCAAGAAGGATGATAAGGATTCGATATTTGCAAGTTATAGGCAGGATTGTACACCTCATGATTCCCTGAGTTCAAATGTGAATGCACTTGCTGCAGCTCTCAAGAAGGTTGATAATGATTTGGTAATTGCAAGTTTTAGGCGGGATTGTTCAAAGTTAAGTTGTTCAGATGCCATCTTTATTGACATGACGGCCAACCATTGCAAGGATGACATACTGAGAAAAATTGTGTCCAAAGCAGCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

2361

Amino Acids

270.16

Weight (kDa)

7.04

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 78 - 206 1.3e-63 Domain of unknown function (DUF6469)
AAA_11 PF13086 244 - 363 4.1e-15 AAA domain
AAA_19 PF13245 264 - 577 6.4e-07 AAA domain
AAA_11 PF13086 529 - 581 1.6e-12 AAA domain
AAA_12 PF13087 590 - 777 4.4e-53 AAA domain
UvrD-helicase PF00580 1236 - 1324 1.6e-06 UvrD/REP helicase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3500
AarI CACCTGC 1 cut(s) 4460
Acc36I ACCTGC 5 cut(s) 770, 1751, 4144, 4460, 5147
AccB1I GGYRCC 1 cut(s) 3078
AccB7I CCANNNNNTGG 3 cut(s) 1100, 2559, 2977
AccI GTMKAC 1 cut(s) 2461
AccII CGCG 1 cut(s) 4721
AclWI GGATC 8 cut(s) 1882, 2253, 2397, 2787, 2955, 3685, 3852, 4968
AcoI YGGCCR 4 cut(s) 2747, 3545, 4446, 7029
AcuI CTGAAG 9 cut(s) 942, 975, 1479, 2564, 4104, 4569, 4730, 5264, 5948
AcvI CACGTG 1 cut(s) 4409
AdeI CACNNNGTG 2 cut(s) 142, 4455
AflIII ACRYGT 5 cut(s) 603, 2822, 3214, 6000, 6348
AhdI GACNNNNNGTC 2 cut(s) 1212, 6349
AhlI ACTAGT 1 cut(s) 3107
AjiI CACGTC 1 cut(s) 6269
AjnI CCWGG 9 cut(s) 355, 820, 1890, 2217, 2655, 3710, 6355, 6459, 6525
AjuI GAANNNNNNNTTGG 6 cut(s) 3315, 3347, 4016, 4048, 5490, 5522
AloI GAACNNNNNNTCC 2 cut(s) 4528, 4560
Alw21I GWGCWC 6 cut(s) 196, 232, 644, 4183, 4945, 6826
Alw44I GTGCAC 3 cut(s) 640, 4941, 6822
AlwI GGATC 8 cut(s) 1882, 2253, 2397, 2787, 2955, 3685, 3852, 4968
AlwNI CAGNNNCTG 4 cut(s) 2559, 3029, 3146, 4613
Ama87I CYCGRG 1 cut(s) 6161
ApaLI GTGCAC 3 cut(s) 640, 4941, 6822
ArsI GACNNNNNNTTYG 2 cut(s) 5270, 5302
AseI ATTAAT 2 cut(s) 2307, 2694
Asp700I GAANNNNTTC 6 cut(s) 120, 132, 996, 2489, 3253, 6384
AspA2I CCTAGG 1 cut(s) 5933
AspLEI GCGC 1 cut(s) 4148
AsuC2I CCSGG 1 cut(s) 6106
AvaI CYCGRG 1 cut(s) 6161
AvaII GGWCC 9 cut(s) 69, 199, 750, 815, 1091, 1955, 2337, 2659, 2968
AvrII CCTAGG 1 cut(s) 5933
AxyI CCTNAGG 4 cut(s) 1210, 4392, 6752, 6779
BaeGI GKGCMC 4 cut(s) 644, 901, 4945, 6826
BaeI ACNNNNGTAYC 2 cut(s) 1166, 1199
BalI TGGCCA 2 cut(s) 2749, 4448
BanI GGYRCC 1 cut(s) 3078
BarI GAAGNNNNNNTAC 2 cut(s) 3792, 3824
BauI CACGAG 1 cut(s) 933
BbrPI CACGTG 1 cut(s) 4409
BbsI GAAGAC 1 cut(s) 1476
Bbv12I GWGCWC 6 cut(s) 196, 232, 644, 4183, 4945, 6826
BceAI ACGGC 3 cut(s) 1594, 6106, 7044
BcgI CGANNNNNNTGC 2 cut(s) 6173, 6207
BciT130I CCWGG 9 cut(s) 357, 822, 1892, 2219, 2657, 3712, 6357, 6461, 6527
BciVI GTATCC 2 cut(s) 180, 6676
BclI TGATCA 1 cut(s) 6153
BcnI CCSGG 1 cut(s) 6106
BcuI ACTAGT 1 cut(s) 3107
BfmI CTRYAG 6 cut(s) 869, 1731, 3636, 4596, 5957, 6930
BfuAI ACCTGC 5 cut(s) 770, 1751, 4144, 4460, 5147
BfuI GTATCC 2 cut(s) 180, 6676
BglI GCCNNNNNGGC 1 cut(s) 5273
BglII AGATCT 1 cut(s) 3880
BlnI CCTAGG 1 cut(s) 5933
BlpI GCTNAGC 2 cut(s) 6195, 6720
BmcAI AGTACT 1 cut(s) 481
Bme18I GGWCC 9 cut(s) 69, 199, 750, 815, 1091, 1955, 2337, 2659, 2968
BmeRI GACNNNNNGTC 2 cut(s) 1212, 6349
BmeT110I CYCGRG 1 cut(s) 6161
BmgBI CACGTC 1 cut(s) 6269
BmiI GGNNCC 7 cut(s) 71, 751, 816, 1200, 1608, 2216, 3080
BmrI ACTGGG 4 cut(s) 3039, 4134, 4492, 4841
BmuI ACTGGG 4 cut(s) 3039, 4134, 4492, 4841
BpiI GAAGAC 1 cut(s) 1476
BpmI CTGGAG 3 cut(s) 1126, 2581, 5626
Bpu10I CCTNAGC 2 cut(s) 1087, 4773
Bpu1102I GCTNAGC 2 cut(s) 6195, 6720
BpuEI CTTGAG 7 cut(s) 2300, 2738, 4271, 5641, 6393, 6824, 6923
BpuMI CCSGG 1 cut(s) 6106
Bsa29I ATCGAT 1 cut(s) 6502
BsaAI YACGTR 3 cut(s) 4409, 5197, 6286
BsaBI GATNNNNATC 2 cut(s) 2388, 5457
BsaI GGTCTC 2 cut(s) 2557, 5731
BsaJI CCNNGG 7 cut(s) 328, 2218, 2397, 4719, 5146, 5933, 6459
BsaWI WCCGGW 2 cut(s) 3950, 4066
BsaXI ACNNNNNCTCC 4 cut(s) 1368, 1398, 4388, 4418
Bse21I CCTNAGG 4 cut(s) 1210, 4392, 6752, 6779
Bse3DI GCAATG 5 cut(s) 1111, 1608, 4377, 6156, 7036
Bse8I GATNNNNATC 2 cut(s) 2388, 5457
BseBI CCWGG 9 cut(s) 357, 822, 1892, 2219, 2657, 3712, 6357, 6461, 6527
BseCI ATCGAT 1 cut(s) 6502
BseDI CCNNGG 7 cut(s) 328, 2218, 2397, 4719, 5146, 5933, 6459
BseJI GATNNNNATC 2 cut(s) 2388, 5457
BseMI GCAATG 5 cut(s) 1111, 1608, 4377, 6156, 7036
BseRI GAGGAG 3 cut(s) 4409, 6721, 6805
BseSI GKGCMC 4 cut(s) 644, 901, 4945, 6826
BsgI GTGCAG 2 cut(s) 1623, 3945
Bsh1236I CGCG 1 cut(s) 4721
BshNI GGYRCC 1 cut(s) 3078
BshVI ATCGAT 1 cut(s) 6502
BsiHKAI GWGCWC 6 cut(s) 196, 232, 644, 4183, 4945, 6826
BsiHKCI CYCGRG 1 cut(s) 6161
BsiSI CCGG 3 cut(s) 3951, 4067, 6106
BslFI GGGAC 6 cut(s) 55, 763, 2619, 3171, 5036, 6178
BsmBI CGTCTC 3 cut(s) 101, 1070, 1187
BsmFI GGGAC 6 cut(s) 55, 763, 2619, 3171, 5036, 6178
BsmI GAATGC 6 cut(s) 1559, 4920, 5652, 5667, 6079, 6925
Bso31I GGTCTC 2 cut(s) 2557, 5731
BsoBI CYCGRG 1 cut(s) 6161
Bsp1286I GDGCHC 7 cut(s) 196, 232, 644, 901, 4183, 4945, 6826
Bsp1407I TGTACA 2 cut(s) 3676, 6887
Bsp1720I GCTNAGC 2 cut(s) 6195, 6720
BspDI ATCGAT 1 cut(s) 6502
BspFNI CGCG 1 cut(s) 4721
BspHI TCATGA 7 cut(s) 658, 1539, 3334, 4426, 5317, 6769, 6895
BspLI GGNNCC 7 cut(s) 71, 751, 816, 1200, 1608, 2216, 3080
BspMAI CTGCAG 1 cut(s) 6934
BspMI ACCTGC 5 cut(s) 770, 1751, 4144, 4460, 5147
BspPI GGATC 8 cut(s) 1882, 2253, 2397, 2787, 2955, 3685, 3852, 4968
BspQI GCTCTTC 2 cut(s) 1733, 4281
BspT107I GGYRCC 1 cut(s) 3078
BspTNI GGTCTC 2 cut(s) 2557, 5731
BsrDI GCAATG 5 cut(s) 1111, 1608, 4377, 6156, 7036
BsrGI TGTACA 2 cut(s) 3676, 6887
BssECI CCNNGG 7 cut(s) 328, 2218, 2397, 4719, 5146, 5933, 6459
BssNAI GTATAC 1 cut(s) 2462
BssSI CACGAG 1 cut(s) 933
BssT1I CCWWGG 3 cut(s) 2397, 5146, 5933
Bst1107I GTATAC 1 cut(s) 2462
Bst2BI CACGAG 1 cut(s) 933
Bst2UI CCWGG 9 cut(s) 357, 822, 1892, 2219, 2657, 3712, 6357, 6461, 6527
BstAPI GCANNNNNTGC 6 cut(s) 236, 1766, 4523, 4613, 6830, 6929
BstAUI TGTACA 2 cut(s) 3676, 6887
BstBAI YACGTR 3 cut(s) 4409, 5197, 6286
BstC8I GCNNGC 9 cut(s) 1077, 1695, 2550, 2747, 4215, 4384, 4507, 4866, 5237
BstDSI CCRYGG 2 cut(s) 328, 4719
BstENI CCTNNNNNAGG 1 cut(s) 5150
BstFNI CGCG 1 cut(s) 4721
BstHHI GCGC 1 cut(s) 4148
BstNI CCWGG 9 cut(s) 357, 822, 1892, 2219, 2657, 3712, 6357, 6461, 6527
BstSFI CTRYAG 6 cut(s) 869, 1731, 3636, 4596, 5957, 6930
BstSLI GKGCMC 4 cut(s) 644, 901, 4945, 6826
BstSNI TACGTA 1 cut(s) 5197
BstUI CGCG 1 cut(s) 4721
BstV2I GAAGAC 1 cut(s) 1476
BstX2I RGATCY 6 cut(s) 2389, 2779, 2947, 3690, 3880, 4973
BstXI CCANNNNNNTGG 3 cut(s) 46, 2644, 2745
BstYI RGATCY 6 cut(s) 2389, 2779, 2947, 3690, 3880, 4973
BstZ17I GTATAC 1 cut(s) 2462
Bsu15I ATCGAT 1 cut(s) 6502
Bsu36I CCTNAGG 4 cut(s) 1210, 4392, 6752, 6779
BsuI GTATCC 2 cut(s) 180, 6676
BsuTUI ATCGAT 1 cut(s) 6502
BtgI CCRYGG 2 cut(s) 328, 4719
BtgZI GCGATG 2 cut(s) 5089, 5641
BtrI CACGTC 1 cut(s) 6269
BtsI GCAGTG 4 cut(s) 3096, 3957, 4878, 5907
BveI ACCTGC 5 cut(s) 770, 1751, 4144, 4460, 5147
Cac8I GCNNGC 9 cut(s) 1077, 1695, 2550, 2747, 4215, 4384, 4507, 4866, 5237
CaiI CAGNNNCTG 4 cut(s) 2559, 3029, 3146, 4613
CciI TCATGA 7 cut(s) 658, 1539, 3334, 4426, 5317, 6769, 6895
CfoI GCGC 1 cut(s) 4148
Cfr42I CCGCGG 1 cut(s) 4722
ClaI ATCGAT 1 cut(s) 6502
CseI GACGC 2 cut(s) 2019, 2493
CsiI ACCWGGT 1 cut(s) 6355
CspCI CAANNNNNGTGG 2 cut(s) 2739, 2774
DraI TTTAAA 3 cut(s) 496, 3910, 6069
DraIII CACNNNGTG 2 cut(s) 142, 4455
DriI GACNNNNNGTC 2 cut(s) 1212, 6349
EaeI YGGCCR 4 cut(s) 2747, 3545, 4446, 7029
Eam1105I GACNNNNNGTC 2 cut(s) 1212, 6349
Eco105I TACGTA 1 cut(s) 5197
Eco130I CCWWGG 3 cut(s) 2397, 5146, 5933
Eco31I GGTCTC 2 cut(s) 2557, 5731
Eco32I GATATC 3 cut(s) 292, 3319, 6456
Eco47I GGWCC 9 cut(s) 69, 199, 750, 815, 1091, 1955, 2337, 2659, 2968
Eco57I CTGAAG 9 cut(s) 942, 975, 1479, 2564, 4104, 4569, 4730, 5264, 5948
Eco72I CACGTG 1 cut(s) 4409
Eco81I CCTNAGG 4 cut(s) 1210, 4392, 6752, 6779
Eco88I CYCGRG 1 cut(s) 6161
EcoNI CCTNNNNNAGG 1 cut(s) 5150
EcoO109I RGGNCCY 4 cut(s) 815, 4246, 5266, 6234
EcoRI GAATTC 4 cut(s) 2848, 3469, 5392, 5845
EcoRII CCWGG 9 cut(s) 355, 820, 1890, 2217, 2655, 3710, 6355, 6459, 6525
EcoRV GATATC 3 cut(s) 292, 3319, 6456
EcoT14I CCWWGG 3 cut(s) 2397, 5146, 5933
EcoT22I ATGCAT 3 cut(s) 1315, 1842, 3828
ErhI CCWWGG 3 cut(s) 2397, 5146, 5933
Esp3I CGTCTC 3 cut(s) 101, 1070, 1187
FaqI GGGAC 6 cut(s) 55, 763, 2619, 3171, 5036, 6178
FauI CCCGC 2 cut(s) 5013, 6972
FauNDI CATATG 7 cut(s) 271, 343, 1502, 1513, 2122, 3849, 3915
FbaI TGATCA 1 cut(s) 6153
FblI GTMKAC 1 cut(s) 2461
GlaI GCGC 1 cut(s) 4147
GsuI CTGGAG 3 cut(s) 1126, 2581, 5626
HapII CCGG 3 cut(s) 3951, 4067, 6106
HgaI GACGC 2 cut(s) 2019, 2493
HhaI GCGC 1 cut(s) 4148
Hin6I GCGC 1 cut(s) 4146
HinP1I GCGC 1 cut(s) 4146
HincII GTYRAC 5 cut(s) 951, 1185, 2209, 6325, 6745
HindII GTYRAC 5 cut(s) 951, 1185, 2209, 6325, 6745
HindIII AAGCTT 6 cut(s) 594, 1774, 2546, 4995, 5813, 6197
HpaI GTTAAC 1 cut(s) 1185
HpaII CCGG 3 cut(s) 3951, 4067, 6106
HpyCH4IV ACGT 6 cut(s) 94, 4408, 4538, 5196, 6268, 6285
HpySE526I ACGT 6 cut(s) 94, 4408, 4538, 5196, 6268, 6285
HspAI GCGC 1 cut(s) 4146
Ksp22I TGATCA 1 cut(s) 6153
KspAI GTTAAC 1 cut(s) 1185
KspI CCGCGG 1 cut(s) 4722
LguI GCTCTTC 2 cut(s) 1733, 4281
LmnI GCTCC 6 cut(s) 145, 1015, 1606, 1903, 3632, 6708
MabI ACCWGGT 1 cut(s) 6355
MaeII ACGT 6 cut(s) 94, 4408, 4538, 5196, 6268, 6285
MfeI CAATTG 3 cut(s) 1643, 2358, 3969
MflI RGATCY 6 cut(s) 2389, 2779, 2947, 3690, 3880, 4973
MhlI GDGCHC 7 cut(s) 196, 232, 644, 901, 4183, 4945, 6826
MlsI TGGCCA 2 cut(s) 2749, 4448
MluNI TGGCCA 2 cut(s) 2749, 4448
MmeI TCCRAC 6 cut(s) 2995, 4014, 4117, 5019, 5046, 5773
Mox20I TGGCCA 2 cut(s) 2749, 4448
Mph1103I ATGCAT 3 cut(s) 1315, 1842, 3828
MroXI GAANNNNTTC 6 cut(s) 120, 132, 996, 2489, 3253, 6384
MscI TGGCCA 2 cut(s) 2749, 4448
MslI CAYNNNNRTG 5 cut(s) 783, 1397, 4883, 4953, 5613
Msp20I TGGCCA 2 cut(s) 2749, 4448
MspA1I CMGCKG 4 cut(s) 2272, 3482, 4721, 5756
MspI CCGG 3 cut(s) 3951, 4067, 6106
MssI GTTTAAAC 1 cut(s) 3910
MunI CAATTG 3 cut(s) 1643, 2358, 3969
Mva1269I GAATGC 6 cut(s) 1559, 4920, 5652, 5667, 6079, 6925
MvaI CCWGG 9 cut(s) 357, 822, 1892, 2219, 2657, 3712, 6357, 6461, 6527
MvnI CGCG 1 cut(s) 4721
NciI CCSGG 1 cut(s) 6106
NdeI CATATG 7 cut(s) 271, 343, 1502, 1513, 2122, 3849, 3915
NlaIV GGNNCC 7 cut(s) 71, 751, 816, 1200, 1608, 2216, 3080
NmeAIII GCCGAG 1 cut(s) 1105
NsiI ATGCAT 3 cut(s) 1315, 1842, 3828
PaeI GCATGC 3 cut(s) 1697, 4217, 4868
PagI TCATGA 7 cut(s) 658, 1539, 3334, 4426, 5317, 6769, 6895
PaqCI CACCTGC 1 cut(s) 4460
PciI ACATGT 5 cut(s) 603, 2822, 3214, 6000, 6348
PciSI GCTCTTC 2 cut(s) 1733, 4281
PcsI WCGNNNNNNNCGW 1 cut(s) 2659
PctI GAATGC 6 cut(s) 1559, 4920, 5652, 5667, 6079, 6925
PdmI GAANNNNTTC 6 cut(s) 120, 132, 996, 2489, 3253, 6384
PflFI GACNNNGTC 1 cut(s) 2013
PflMI CCANNNNNTGG 3 cut(s) 1100, 2559, 2977
PfoI TCCNGGA 2 cut(s) 1890, 6525
PmaCI CACGTG 1 cut(s) 4409
PmeI GTTTAAAC 1 cut(s) 3910
PmlI CACGTG 1 cut(s) 4409
Ppu21I YACGTR 3 cut(s) 4409, 5197, 6286
PpuMI RGGWCCY 1 cut(s) 815
PscI ACATGT 5 cut(s) 603, 2822, 3214, 6000, 6348
PshBI ATTAAT 2 cut(s) 2307, 2694
PsiI TTATAA 1 cut(s) 3500
Psp5II RGGWCCY 1 cut(s) 815
Psp6I CCWGG 9 cut(s) 355, 820, 1890, 2217, 2655, 3710, 6355, 6459, 6525
PspCI CACGTG 1 cut(s) 4409
PspGI CCWGG 9 cut(s) 355, 820, 1890, 2217, 2655, 3710, 6355, 6459, 6525
PspN4I GGNNCC 7 cut(s) 71, 751, 816, 1200, 1608, 2216, 3080
PspPPI RGGWCCY 1 cut(s) 815
PsrI GAACNNNNNNTAC 2 cut(s) 2520, 2552
PstI CTGCAG 1 cut(s) 6934
PstNI CAGNNNCTG 4 cut(s) 2559, 3029, 3146, 4613
PsuI RGATCY 6 cut(s) 2389, 2779, 2947, 3690, 3880, 4973
PsyI GACNNNGTC 1 cut(s) 2013
PvuII CAGCTG 2 cut(s) 3482, 5756
RseI CAYNNNNRTG 5 cut(s) 783, 1397, 4883, 4953, 5613
SacII CCGCGG 1 cut(s) 4722
SapI GCTCTTC 2 cut(s) 1733, 4281
ScaI AGTACT 1 cut(s) 481
SduI GDGCHC 7 cut(s) 196, 232, 644, 901, 4183, 4945, 6826
SexAI ACCWGGT 1 cut(s) 6355
SfcI CTRYAG 6 cut(s) 869, 1731, 3636, 4596, 5957, 6930
Sfr303I CCGCGG 1 cut(s) 4722
SgrBI CCGCGG 1 cut(s) 4722
SinI GGWCC 9 cut(s) 69, 199, 750, 815, 1091, 1955, 2337, 2659, 2968
SmiMI CAYNNNNRTG 5 cut(s) 783, 1397, 4883, 4953, 5613
SmlI CTYRAG 7 cut(s) 2279, 2717, 4250, 5656, 6408, 6839, 6938
SmoI CTYRAG 7 cut(s) 2279, 2717, 4250, 5656, 6408, 6839, 6938
SnaBI TACGTA 1 cut(s) 5197
SpeI ACTAGT 1 cut(s) 3107
SphI GCATGC 3 cut(s) 1697, 4217, 4868
SspI AATATT 4 cut(s) 4282, 4587, 5190, 5768
StyI CCWWGG 3 cut(s) 2397, 5146, 5933
TaiI ACGT 6 cut(s) 97, 4411, 4541, 5199, 6271, 6288
TatI WGTACW 4 cut(s) 479, 3676, 4842, 6887
TauI GCSGC 3 cut(s) 3550, 4721, 6477
TspGWI ACGGA 5 cut(s) 1211, 2501, 2981, 3481, 6296
Tth111I GACNNNGTC 1 cut(s) 2013
Van91I CCANNNNNTGG 3 cut(s) 1100, 2559, 2977
VneI GTGCAC 3 cut(s) 640, 4941, 6822
VpaK11BI GGWCC 9 cut(s) 69, 199, 750, 815, 1091, 1955, 2337, 2659, 2968
VspI ATTAAT 2 cut(s) 2307, 2694
XagI CCTNNNNNAGG 1 cut(s) 5150
XbaI TCTAGA 2 cut(s) 1054, 1868
XcmI CCANNNNNNNNNTGG 4 cut(s) 1101, 2404, 3620, 5566
XmaJI CCTAGG 1 cut(s) 5933
XmiI GTMKAC 1 cut(s) 2461
XmnI GAANNNNTTC 6 cut(s) 120, 132, 996, 2489, 3253, 6384
ZrmI AGTACT 1 cut(s) 481
Zsp2I ATGCAT 3 cut(s) 1315, 1842, 3828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.