RchiOBHm_Chr4g0446011

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000223
Physical Location & Seq
Forward (+)
66321571 .. 66338069
16499 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41355

Sequence Viewer

Length: 3663 bp
ATGAGTCAAATTGCTTTGTTTAAACACATGTGCAACAATGTTGAAGAGGGATTTGTCTTTTCTGGTGATACAGCCCAAACAATAGCAAGGGGTATTGACTTTAGGTTTCAGGATATACGACATCTGTTCTACAAGAAGTTTGTATTTGAGTCAAGAAGCAATAGCAACGATGAAAGAAAAGAAAAAGGCCTCGTCTCTGAATTACTTCAGTTGACTCAAAACTTCCGTACTCATGCTGGTATATTGAAGTTATCACAAAGCATTGTTGAACTACTGTATCGGTTTTTCCCCTTTTCTGTTGATGTTTTAAAACCTGAAACCAGTCTGATTTATGGGGAAGCTCCAGTTTTGCTTGAATCTGGGGAAAACGAAAATGCAATCATGAAAATTTTTGGAAACAGTGGAAATATAGTTGGCTTTGGTGCAGAGCAGGTGATTTTGGTGCGAGATGGTAATGCTCGAAGAGAAATATCCAAATTTGTAGGGAAGCATGCTCTTGTCCTAACCATAGTGGAGTGTAAGGGCCTTGAGTTCCAGGATGTCCTCTTATACAACTTTTTCGGCACATCACCTTTGAAAAATCAGTGGAGGGTCATATATGATTACATGAAGGAACAAGATTTACTTGACTCCACATTACCTAAGTGCTTTCCAAGTTTCAGTGAATCAAAACACAACATATTGTGCTCTGAACTGAAGCAATTATATGTGGCTGTTACTCGAACAAGACAGAGATTGTGGATTTGTGAAAATGTGGAAGACCTCTCGAAACCTATGTTTGACTATTGGAAGAAAAAATGTCTTGTGCAACAAAGGCAGTTAGATGATTCACTTGCCCAGGCAATGCAAGTGGCAAGCAGTCCAGAGGAGTGGAAATCACGAGGCATTAAGCTATATCATGAACATAACTATGAAATGGCCACAATGTGCTTTGAAAGAGCTGGTGACACTTACTGGGAAAGGAGGTCTAAAGCTTCCGGCCTCAAAGCTATTGCTGACCGTATGCGAACATCAAATCCCGAAGAGGCTAAATCGATCCTTAGAGAAGCTGCTGAAATATTCGATGCTATTGGCAAGGCAGATTCTGCTGCAAGATGTTTTTCTGATTTGGGGGAGTATGAAAGAGCAGCTAGGCTATATTTGGAAAAATGTGGAGACTCGGAACTTCAAAGAGCTGCAGAATCTTTTTCACTAGCGGGATGCTTTGAGGATGCTGCAGATGTCTATGCCAAGGGAAATTTTTTCGCGGAGTGTCTCACTGTTTGTGCAAATGGGAAACTATTTGAAATGGGTTTGCAGTATATTAATTATTGGAAACAGCATGCTGTTGAGGACTGTGCTAAGGCTAGTAGAGGAGAAGGAATATATAAAATGGAGCAGGAATTTTTAGAGAGCTGCGCACTTCACTATCATAAGTTGAAAGATAACAGAATAATGATGAAATTTGTGAAAGCTTTCAATTCTATAATATTGATGCGGGACTTTTTGAAGAGTTTAGGGAGCCTTGATGAGCTTTTGTCATTGGAGGAAGAATTTGGAAATTATCTGGAAGCCGCAAACATCGCCCAGCTTAAAGGTGAAATCCTACTTGAATCTGATTACCTTGGAAAGGCAGGTAAGTTCAAAGAGGCCTCACTGCATATTCTGTTTTATGTAATTTCCAAGTCTCTTTGGTCATCTGGTAGCATGGGCTGGCCCATGAAAACGTTTCCACAACAGGAGGAGCTTCTGACAAAGGCCAAGTCATTTGCCAAGAATGTGAAAGGTAACCTTTATGAGCTGGTTTGCACTGAGTCGGAGATTTTATTGAATGGGCAGGATAACTTGGCTGTTTTGAAACATCAAATGGAAGCTTCTGAAAGACTTGAGAGTATTAGAGGTGAAGTGTTATCAGCTCGAAAAATTTTGGATGCCCATCTCTCTCCAAGAACTGATAAGTATTTATGGGAGAAAGAATTAATTGGAGATCTTGTAAAGCATTCAAAAGATAAAATATCTAGAAATCAGGTGTCCGTTGATTCGCTTGTCTACTACTGGAATTTCTGGAAGGAGAAGATCCTTCACATTATTGAATCTGTAGATTGTGTGGAAAGTCCAGAGTACAATGGTTATGTAGAACTCTGTTTTACTTGTTTAGGAGTTTGGAGGTTGTATCATAATCTGAATCCAATATATGTCTTACTGGTCCCTGATGCTGATTGGATTAGTGGTCTGGACAAAAGGCATTTGAAAAGTTATGGGAAGTCGGTCTCCATTGATGTTCATCAGCTCATTCCAGCAGCTCAGTATTATTGGAGTTCAGAACTGCTCTCTGTTGGCATCAAAGTTTTGGAAAAGCTTGAAGCACTTTTCAAGTTCCCACTAAAGAATTCTGACTCGACATTCTTCCAGTGCAGGGCTCTTACCCTTATCTATGATGTTGCAAGAAATCTTTTGGATTCCAAATATCTGAAGCCAACCCTTATCTATGATGTTGCAAGAAATCTTTTGGATTCCAAATATCTGAAGCCAAGGGATCAAGATTACTTGAAACTACAGAAGCTGGTAACATTTTCGGCCGGGGATGATCTAGAGTATGTTGATTACATCTTTCCCTTAGATTGGAGGAATTCATTGAGACAGAATATGATTTCTCTTAGAAGAACTGATGCTTCAAAGAATGTGCTGAATCAAGTTATAGTTGAACATGCCAGCTTGAAGGACGAGCTGTCTTATGGGCAGATTGGAAGGATCGCAATGATCATTCTCGGGTCAGGTAAGCTGCTGAATACTGAGCTCTCTGTTCAGCTTGTGAAAAAGCTTGAGATAAATAAACCGTGGAAGGCCTTCATTGAGAATCTCTGTGCAAGCATTGGACCTGAACATACTCGTCAGGAACCAATAGAGGTGTCTGTCATGTGGTGGTTACATGAGGCTTTGGTTGAAACTTATAGTGCCAACTGGAGGGAGGTTTCCGACTACATAACACCTGGTTGCTTCTTGTATCTTGTGGAGCGCCTTCTGTTTTCAGCAAGTTGCTTTCAAGGTTTTGTCATCACTACAAGTTCTTGCTTTATTGAATGGCTGATATGCCCGGATGAAGATACCAGCTTACGTTCCATGGTGACTGGTGGACGTCCTTCTCTGGAAGACATTCTTCCATTTGTGATTACTGTGGTTCGCGAGTGTATTTTTATCAAGAAGGATATGATTGAATGGATTGAGAAGTCCGACAGAAATTGGATGCAGTATTATCAGCCACTCATGTTGCGATTGGTAATTGTCTTGTGTTTGATTCATTTGAACTTTGGCTCGTGTTTGGATATGATCCATGATTTGCTGGGAAGAAACTTTATCACTGAACTCCTACCACGGGAGTTTTATGATGCACTTAGGAGGAGGAGGAGGAGGAAGCACAATTCTCTCATTTTAAATGTGAATGTGCTTGCTGAAGCTGTCCAGAAGATTGATAATACTTTGGTGATTGCAAGTTTCGGGGCTGATTGTTCAAGGTTGCACTGTTCGGATGCCATCTTTGTCGACATGACGGCCAACCATTGCAAGGATGACATATTGAGAAAATGGTTTCCAAATGCCACATATCAACAAGATGTTGACACTTCCACCCCATCTGGAAGCAGGCGAAGAACAAGACAAAGGGCAAGTGAAAGAAGGAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase UvrD_C

Protein Analysis

1220

Amino Acids

140.65

Weight (kDa)

6.41

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 421
AatII GACGTC 1 cut(s) 3118
Acc16I TGCGCA 1 cut(s) 1399
Acc36I ACCTGC 2 cut(s) 421, 1604
AccI GTMKAC 2 cut(s) 2028, 3519
AccII CGCG 2 cut(s) 1247, 3162
AciI CCGC 4 cut(s) 1196, 1247, 1477, 1554
AclI AACGTT 1 cut(s) 1706
AclWI GGATC 5 cut(s) 1030, 2050, 2523, 2738, 3301
AcoI YGGCCR 3 cut(s) 918, 2556, 3528
AcuI CTGAAG 5 cut(s) 191, 716, 2471, 2525, 3450
AcyI GRCGYC 1 cut(s) 3115
AdeI CACNNNGTG 1 cut(s) 927
AfaI GTAC 2 cut(s) 229, 2102
AfiI CCNNNNNNNGG 6 cut(s) 1609, 2395, 2601, 2943, 3352, 3541
AflIII ACRYGT 1 cut(s) 27
AhdI GACNNNNNGTC 1 cut(s) 2707
AjnI CCWGG 3 cut(s) 534, 837, 2968
AloI GAACNNNNNNTCC 2 cut(s) 1000, 1032
Alw21I GWGCWC 2 cut(s) 689, 2778
Alw26I GTCTC 6 cut(s) 199, 1149, 1259, 1671, 2254, 2611
AlwI GGATC 5 cut(s) 1030, 2050, 2523, 2738, 3301
AlwNI CAGNNNCTG 2 cut(s) 1085, 2542
Ama87I CYCGRG 1 cut(s) 2747
ApeKI GCWGC 8 cut(s) 1049, 1088, 1127, 1175, 1214, 1395, 2279, 2761
ArsI GACNNNNNNTTYG 2 cut(s) 1727, 1759
AseI ATTAAT 2 cut(s) 1305, 1958
Asp700I GAANNNNTTC 4 cut(s) 204, 1454, 2825, 3132
AspLEI GCGC 2 cut(s) 1400, 2997
AspS9I GGNCC 4 cut(s) 523, 1695, 2185, 2855
AsuC2I CCSGG 2 cut(s) 2560, 3074
AsuHPI GGTGA 8 cut(s) 77, 445, 561, 956, 1589, 1892, 3115, 3472
AvaI CYCGRG 1 cut(s) 2747
AvaII GGWCC 2 cut(s) 2185, 2855
BaeI ACNNNNGTAYC 2 cut(s) 260, 293
BalI TGGCCA 1 cut(s) 920
BanII GRGCYC 2 cut(s) 2401, 2778
BauI CACGAG 2 cut(s) 879, 3292
BbsI GAAGAC 2 cut(s) 765, 3135
Bbv12I GWGCWC 2 cut(s) 689, 2778
BbvI GCAGC 8 cut(s) 1036, 1075, 1139, 1162, 1201, 1382, 2291, 2748
BccI CCATC 4 cut(s) 443, 1923, 3518, 3616
BceAI ACGGC 1 cut(s) 3543
BciT130I CCWGG 3 cut(s) 536, 839, 2970
BclI TGATCA 1 cut(s) 2739
BcnI CCSGG 2 cut(s) 2560, 3074
BcoDI GTCTC 6 cut(s) 199, 1149, 1259, 1671, 2254, 2611
BfaI CTAG 5 cut(s) 1131, 1193, 1347, 1998, 2570
BfmI CTRYAG 4 cut(s) 1176, 1215, 2076, 2534
BfoI RGCGCY 1 cut(s) 2998
BfuAI ACCTGC 2 cut(s) 421, 1604
BglII AGATCT 1 cut(s) 1966
BisI GCNGC 9 cut(s) 1050, 1089, 1128, 1176, 1215, 1396, 1554, 2280, 2762
BlsI GCNGC 9 cut(s) 1051, 1090, 1129, 1177, 1216, 1397, 1555, 2281, 2763
Bme1390I CCNGG 5 cut(s) 536, 839, 2560, 2970, 3074
Bme18I GGWCC 2 cut(s) 2185, 2855
BmeRI GACNNNNNGTC 1 cut(s) 2707
BmeT110I CYCGRG 1 cut(s) 2747
BmgT120I GGNCC 4 cut(s) 523, 1695, 2185, 2855
BmiI GGNNCC 3 cut(s) 1502, 2187, 2877
BmrFI CCNGG 5 cut(s) 536, 839, 2560, 2970, 3074
BmrI ACTGGG 1 cut(s) 964
BmuI ACTGGG 1 cut(s) 964
BpiI GAAGAC 2 cut(s) 765, 3135
BpmI CTGGAG 2 cut(s) 327, 2962
Bpu10I CCTNAGC 1 cut(s) 1341
BpuEI CTTGAG 3 cut(s) 548, 1886, 2822
BpuMI CCSGG 2 cut(s) 2560, 3074
Bsa29I ATCGAT 1 cut(s) 1034
BsaBI GATNNNNATC 2 cut(s) 1914, 2262
BsaHI GRCGYC 1 cut(s) 3115
BsaI GGTCTC 1 cut(s) 2254
BsaJI CCNNGG 8 cut(s) 837, 1230, 1603, 2510, 2559, 2816, 3099, 3350
BsaXI ACNNNNNCTCC 2 cut(s) 1956, 1986
Bsc4I CCNNNNNNNGG 6 cut(s) 1609, 2395, 2601, 2943, 3352, 3541
Bse1I ACTGG 8 cut(s) 321, 344, 959, 2039, 2187, 2389, 2945, 3112
Bse3DI GCAATG 3 cut(s) 849, 2742, 3535
Bse8I GATNNNNATC 2 cut(s) 1914, 2262
BseBI CCWGG 3 cut(s) 536, 839, 2970
BseCI ATCGAT 1 cut(s) 1034
BseDI CCNNGG 8 cut(s) 837, 1230, 1603, 2510, 2559, 2816, 3099, 3350
BseGI GGATG 9 cut(s) 544, 1205, 1216, 1915, 2569, 3082, 3228, 3511, 3550
BseJI GATNNNNATC 2 cut(s) 1914, 2262
BseLI CCNNNNNNNGG 6 cut(s) 1609, 2395, 2601, 2943, 3352, 3541
BseMI GCAATG 3 cut(s) 849, 2742, 3535
BseMII CTCAG 3 cut(s) 1782, 2297, 2763
BseNI ACTGG 8 cut(s) 321, 344, 959, 2039, 2187, 2389, 2945, 3112
BseRI GAGGAG 7 cut(s) 881, 1368, 1736, 3391, 3394, 3397, 3400
BseX3I CGGCCG 1 cut(s) 2556
BseXI GCAGC 8 cut(s) 1036, 1075, 1139, 1162, 1201, 1382, 2291, 2748
BseYI CCCAGC 2 cut(s) 1566, 3319
BsgI GTGCAG 2 cut(s) 444, 2413
Bsh1236I CGCG 2 cut(s) 1247, 3162
Bsh1285I CGRYCG 1 cut(s) 2559
BshVI ATCGAT 1 cut(s) 1034
BsiEI CGRYCG 1 cut(s) 2559
BsiHKAI GWGCWC 2 cut(s) 689, 2778
BsiHKCI CYCGRG 1 cut(s) 2747
BsiSI CCGG 3 cut(s) 978, 2559, 3074
BslFI GGGAC 2 cut(s) 1493, 2171
BslI CCNNNNNNNGG 6 cut(s) 1609, 2395, 2601, 2943, 3352, 3541
BsmAI GTCTC 6 cut(s) 199, 1149, 1259, 1671, 2254, 2611
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 1493, 2171
BsmI GAATGC 1 cut(s) 1978
Bso31I GGTCTC 1 cut(s) 2254
BsoBI CYCGRG 1 cut(s) 2747
Bsp1286I GDGCHC 3 cut(s) 689, 2401, 2778
Bsp143I GATC 8 cut(s) 1035, 1966, 2055, 2515, 2566, 2730, 2739, 3306
Bsp19I CCATGG 1 cut(s) 3099
Bsp68I TCGCGA 1 cut(s) 3162
BspACI CCGC 4 cut(s) 1196, 1247, 1477, 1554
BspCNI CTCAG 3 cut(s) 1783, 2296, 2764
BspDI ATCGAT 1 cut(s) 1034
BspFNI CGCG 2 cut(s) 1247, 3162
BspHI TCATGA 2 cut(s) 381, 898
BspLI GGNNCC 3 cut(s) 1502, 2187, 2877
BspMAI CTGCAG 2 cut(s) 1180, 1219
BspMI ACCTGC 2 cut(s) 421, 1604
BspPI GGATC 5 cut(s) 1030, 2050, 2523, 2738, 3301
BspTNI GGTCTC 1 cut(s) 2254
BsrDI GCAATG 3 cut(s) 849, 2742, 3535
BsrI ACTGG 8 cut(s) 321, 344, 959, 2039, 2187, 2389, 2945, 3112
BssECI CCNNGG 8 cut(s) 837, 1230, 1603, 2510, 2559, 2816, 3099, 3350
BssMI GATC 8 cut(s) 1035, 1966, 2055, 2515, 2566, 2730, 2739, 3306
BssNI GRCGYC 1 cut(s) 3115
BssSI CACGAG 2 cut(s) 879, 3292
BssT1I CCWWGG 4 cut(s) 1230, 1603, 2510, 3099
Bst2BI CACGAG 2 cut(s) 879, 3292
Bst2UI CCWGG 3 cut(s) 536, 839, 2970
Bst4CI ACNGT 8 cut(s) 276, 401, 1001, 1261, 1337, 2817, 3154, 3500
Bst6I CTCTTC 4 cut(s) 39, 457, 1017, 1484
BstACI GRCGYC 1 cut(s) 3115
BstAPI GCANNNNNTGC 1 cut(s) 1085
BstC8I GCNNGC 8 cut(s) 492, 856, 1323, 1694, 2692, 2848, 3426, 3620
BstDEI CTNAG 9 cut(s) 642, 1040, 1341, 1791, 2283, 2596, 2636, 2772, 3371
BstDSI CCRYGG 3 cut(s) 2816, 3099, 3350
BstEII GGTNACC 1 cut(s) 1766
BstENI CCTNNNNNAGG 1 cut(s) 1607
BstF5I GGATG 9 cut(s) 544, 1205, 1216, 1915, 2569, 3082, 3228, 3511, 3550
BstFNI CGCG 2 cut(s) 1247, 3162
BstH2I RGCGCY 1 cut(s) 2998
BstHHI GCGC 2 cut(s) 1400, 2997
BstKTI GATC 8 cut(s) 1038, 1969, 2058, 2518, 2569, 2733, 2742, 3309
BstMAI GTCTC 6 cut(s) 199, 1149, 1259, 1671, 2254, 2611
BstMBI GATC 8 cut(s) 1035, 1966, 2055, 2515, 2566, 2730, 2739, 3306
BstMCI CGRYCG 1 cut(s) 2559
BstMWI GCNNNNNNNGC 3 cut(s) 814, 1085, 1562
BstNI CCWGG 3 cut(s) 536, 839, 2970
BstNSI RCATGY 4 cut(s) 31, 494, 1325, 2690
BstPI GGTNACC 1 cut(s) 1766
BstSCI CCNGG 5 cut(s) 534, 837, 2558, 2968, 3072
BstSFI CTRYAG 4 cut(s) 1176, 1215, 2076, 2534
BstUI CGCG 2 cut(s) 1247, 3162
BstV1I GCAGC 8 cut(s) 1036, 1075, 1139, 1162, 1201, 1382, 2291, 2748
BstV2I GAAGAC 2 cut(s) 765, 3135
BstX2I RGATCY 2 cut(s) 1966, 2055
BstXI CCANNNNNNTGG 1 cut(s) 870
BstYI RGATCY 2 cut(s) 1966, 2055
BstZI CGGCCG 1 cut(s) 2556
Bsu15I ATCGAT 1 cut(s) 1034
BsuTUI ATCGAT 1 cut(s) 1034
BtgI CCRYGG 3 cut(s) 2816, 3099, 3350
BtgZI GCGATG 1 cut(s) 1546
BtsCI GGATG 9 cut(s) 544, 1205, 1216, 1915, 2569, 3082, 3228, 3511, 3550
BtsI GCAGTG 1 cut(s) 1634
BtsIMutI CAGTG 9 cut(s) 406, 590, 667, 1257, 1634, 1788, 2396, 3336, 3496
BtuMI TCGCGA 1 cut(s) 3162
BveI ACCTGC 2 cut(s) 421, 1604
Cac8I GCNNGC 8 cut(s) 492, 856, 1323, 1694, 2692, 2848, 3426, 3620
CaiI CAGNNNCTG 2 cut(s) 1085, 2542
CciI TCATGA 2 cut(s) 381, 898
CfoI GCGC 2 cut(s) 1400, 2997
Cfr13I GGNCC 4 cut(s) 523, 1695, 2185, 2855
ClaI ATCGAT 1 cut(s) 1034
CsiI ACCWGGT 1 cut(s) 2968
Csp6I GTAC 2 cut(s) 228, 2101
CspCI CAANNNNNGTGG 4 cut(s) 831, 866, 3228, 3263
CviQI GTAC 2 cut(s) 228, 2101
DdeI CTNAG 9 cut(s) 642, 1040, 1341, 1791, 2283, 2596, 2636, 2772, 3371
DpnI GATC 8 cut(s) 1037, 1968, 2057, 2517, 2568, 2732, 2741, 3308
DpnII GATC 8 cut(s) 1035, 1966, 2055, 2515, 2566, 2730, 2739, 3306
DraI TTTAAA 3 cut(s) 22, 309, 3411
DraIII CACNNNGTG 1 cut(s) 927
DriI GACNNNNNGTC 1 cut(s) 2707
EaeI YGGCCR 3 cut(s) 918, 2556, 3528
EagI CGGCCG 1 cut(s) 2556
Eam1104I CTCTTC 4 cut(s) 39, 457, 1017, 1484
Eam1105I GACNNNNNGTC 1 cut(s) 2707
EarI CTCTTC 4 cut(s) 39, 457, 1017, 1484
Ecl136II GAGCTC 1 cut(s) 2776
EclXI CGGCCG 1 cut(s) 2556
Eco130I CCWWGG 4 cut(s) 1230, 1603, 2510, 3099
Eco147I AGGCCT 3 cut(s) 189, 1631, 2825
Eco24I GRGCYC 2 cut(s) 2401, 2778
Eco31I GGTCTC 1 cut(s) 2254
Eco47I GGWCC 2 cut(s) 2185, 2855
Eco52I CGGCCG 1 cut(s) 2556
Eco53kI GAGCTC 1 cut(s) 2776
Eco57I CTGAAG 5 cut(s) 191, 716, 2471, 2525, 3450
Eco88I CYCGRG 1 cut(s) 2747
Eco91I GGTNACC 1 cut(s) 1766
EcoICRI GAGCTC 1 cut(s) 2776
EcoNI CCTNNNNNAGG 1 cut(s) 1607
EcoO109I RGGNCCY 1 cut(s) 523
EcoO65I GGTNACC 1 cut(s) 1766
EcoRI GAATTC 2 cut(s) 2368, 2608
EcoRII CCWGG 3 cut(s) 534, 837, 2968
EcoT14I CCWWGG 4 cut(s) 1230, 1603, 2510, 3099
EcoT38I GRGCYC 2 cut(s) 2401, 2778
ErhI CCWWGG 4 cut(s) 1230, 1603, 2510, 3099
Esp3I CGTCTC 1 cut(s) 199
FalI AAGNNNNNCTT 6 cut(s) 609, 641, 1755, 1787, 3120, 3152
FaqI GGGAC 2 cut(s) 1493, 2171
FauI CCCGC 2 cut(s) 1189, 1470
FbaI TGATCA 1 cut(s) 2739
FblI GTMKAC 2 cut(s) 2028, 3519
Fnu4HI GCNGC 9 cut(s) 1050, 1089, 1128, 1176, 1215, 1396, 1554, 2280, 2762
FokI GGATG 9 cut(s) 551, 1212, 1223, 1922, 2576, 3089, 3235, 3518, 3557
FriOI GRGCYC 2 cut(s) 2401, 2778
Fsp4HI GCNGC 9 cut(s) 1050, 1089, 1128, 1176, 1215, 1396, 1554, 2280, 2762
FspBI CTAG 5 cut(s) 1131, 1193, 1347, 1998, 2570
FspI TGCGCA 1 cut(s) 1399
GlaI GCGC 2 cut(s) 1399, 2996
GluI GCNGC 9 cut(s) 1050, 1089, 1128, 1176, 1215, 1396, 1554, 2280, 2762
GsaI CCCAGC 2 cut(s) 1570, 3323
GsuI CTGGAG 2 cut(s) 327, 2962
HaeII RGCGCY 1 cut(s) 2998
HapII CCGG 3 cut(s) 978, 2559, 3074
HhaI GCGC 2 cut(s) 1400, 2997
Hin1I GRCGYC 1 cut(s) 3115
Hin6I GCGC 2 cut(s) 1398, 2995
HinP1I GCGC 2 cut(s) 1398, 2995
HincII GTYRAC 3 cut(s) 213, 3520, 3595
HindII GTYRAC 3 cut(s) 213, 3520, 3595
HindIII AAGCTT 5 cut(s) 972, 1452, 1851, 2336, 2798
HpaII CCGG 3 cut(s) 978, 2559, 3074
HphI GGTGA 8 cut(s) 77, 445, 561, 956, 1589, 1892, 3115, 3472
Hpy166II GTNNAC 5 cut(s) 213, 2029, 3113, 3520, 3595
Hpy8I GTNNAC 5 cut(s) 213, 2029, 3113, 3520, 3595
HpyCH4III ACNGT 8 cut(s) 276, 401, 1001, 1261, 1337, 2817, 3154, 3500
HpyCH4IV ACGT 3 cut(s) 1706, 3094, 3115
HpyF10VI GCNNNNNNNGC 3 cut(s) 814, 1085, 1562
HpyF3I CTNAG 9 cut(s) 642, 1040, 1341, 1791, 2283, 2596, 2636, 2772, 3371
HpySE526I ACGT 3 cut(s) 1706, 3094, 3115
Hsp92I GRCGYC 1 cut(s) 3115
HspAI GCGC 2 cut(s) 1398, 2995
Ksp22I TGATCA 1 cut(s) 2739
Kzo9I GATC 8 cut(s) 1035, 1966, 2055, 2515, 2566, 2730, 2739, 3306
LmnI GCTCC 5 cut(s) 346, 1375, 1500, 1723, 2992
Lsp1109I GCAGC 8 cut(s) 1036, 1075, 1139, 1162, 1201, 1382, 2291, 2748
MabI ACCWGGT 1 cut(s) 2968
MaeI CTAG 5 cut(s) 1131, 1193, 1347, 1998, 2570
MaeII ACGT 3 cut(s) 1706, 3094, 3115
MaeIII GTNAC 6 cut(s) 715, 944, 1766, 2545, 2904, 3103
MalI GATC 8 cut(s) 1037, 1968, 2057, 2517, 2568, 2732, 2741, 3308
MboI GATC 8 cut(s) 1035, 1966, 2055, 2515, 2566, 2730, 2739, 3306
MflI RGATCY 2 cut(s) 1966, 2055
MhlI GDGCHC 3 cut(s) 689, 2401, 2778
MlsI TGGCCA 1 cut(s) 920
MluNI TGGCCA 1 cut(s) 920
MlyI GAGTC 7 cut(s) 13, 158, 208, 623, 1151, 1802, 2369
MmeI TCCRAC 3 cut(s) 1776, 2979, 3234
Mox20I TGGCCA 1 cut(s) 920
MroXI GAANNNNTTC 4 cut(s) 204, 1454, 2825, 3132
MscI TGGCCA 1 cut(s) 920
MseI TTAA 7 cut(s) 21, 308, 888, 1305, 1572, 1958, 3410
MslI CAYNNNNRTG 1 cut(s) 909
Msp20I TGGCCA 1 cut(s) 920
MspI CCGG 3 cut(s) 978, 2559, 3074
MspR9I CCNGG 5 cut(s) 536, 839, 2560, 2970, 3074
MssI GTTTAAAC 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 1978
MvaI CCWGG 3 cut(s) 536, 839, 2970
MvnI CGCG 2 cut(s) 1247, 3162
MwoI GCNNNNNNNGC 3 cut(s) 814, 1085, 1562
NciI CCSGG 2 cut(s) 2560, 3074
NcoI CCATGG 1 cut(s) 3099
NdeII GATC 8 cut(s) 1035, 1966, 2055, 2515, 2566, 2730, 2739, 3306
NlaIV GGNNCC 3 cut(s) 1502, 2187, 2877
NmuCI GTSAC 2 cut(s) 944, 3103
NruI TCGCGA 1 cut(s) 3162
NsbI TGCGCA 1 cut(s) 1399
NspI RCATGY 4 cut(s) 31, 494, 1325, 2690
PaeI GCATGC 2 cut(s) 494, 1325
PagI TCATGA 2 cut(s) 381, 898
PaqCI CACCTGC 1 cut(s) 421
PceI AGGCCT 3 cut(s) 189, 1631, 2825
PciI ACATGT 1 cut(s) 27
PctI GAATGC 1 cut(s) 1978
PdmI GAANNNNTTC 4 cut(s) 204, 1454, 2825, 3132
PfoI TCCNGGA 1 cut(s) 534
PkrI GCNGC 9 cut(s) 1051, 1090, 1129, 1177, 1216, 1397, 1555, 2281, 2763
PleI GAGTC 7 cut(s) 12, 157, 208, 623, 1151, 1801, 2369
PmeI GTTTAAAC 1 cut(s) 22
PpsI GAGTC 7 cut(s) 12, 157, 208, 623, 1151, 1801, 2369
PscI ACATGT 1 cut(s) 27
PshBI ATTAAT 2 cut(s) 1305, 1958
Psp124BI GAGCTC 1 cut(s) 2778
Psp1406I AACGTT 1 cut(s) 1706
Psp6I CCWGG 3 cut(s) 534, 837, 2968
PspEI GGTNACC 1 cut(s) 1766
PspFI CCCAGC 2 cut(s) 1566, 3319
PspGI CCWGG 3 cut(s) 534, 837, 2968
PspN4I GGNNCC 3 cut(s) 1502, 2187, 2877
PspPI GGNCC 4 cut(s) 523, 1695, 2185, 2855
PsrI GAACNNNNNNTAC 2 cut(s) 606, 638
PstI CTGCAG 2 cut(s) 1180, 1219
PstNI CAGNNNCTG 2 cut(s) 1085, 2542
PsuI RGATCY 2 cut(s) 1966, 2055
RruI TCGCGA 1 cut(s) 3162
RsaI GTAC 2 cut(s) 229, 2102
RsaNI GTAC 2 cut(s) 228, 2101
RseI CAYNNNNRTG 1 cut(s) 909
SacI GAGCTC 1 cut(s) 2778
SalI GTCGAC 1 cut(s) 3518
SaqAI TTAA 7 cut(s) 21, 308, 888, 1305, 1572, 1958, 3410
SatI GCNGC 9 cut(s) 1050, 1089, 1128, 1176, 1215, 1396, 1554, 2280, 2762
Sau3AI GATC 8 cut(s) 1035, 1966, 2055, 2515, 2566, 2730, 2739, 3306
Sau96I GGNCC 4 cut(s) 523, 1695, 2185, 2855
SchI GAGTC 7 cut(s) 13, 158, 208, 623, 1151, 1802, 2369
ScrFI CCNGG 5 cut(s) 536, 839, 2560, 2970, 3074
SduI GDGCHC 3 cut(s) 689, 2401, 2778
SexAI ACCWGGT 1 cut(s) 2968
SfcI CTRYAG 4 cut(s) 1176, 1215, 2076, 2534
SinI GGWCC 2 cut(s) 2185, 2855
SmiMI CAYNNNNRTG 1 cut(s) 909
SmlI CTYRAG 3 cut(s) 527, 1865, 2801
SmoI CTYRAG 3 cut(s) 527, 1865, 2801
SphI GCATGC 2 cut(s) 494, 1325
SseBI AGGCCT 3 cut(s) 189, 1631, 2825
SsiI CCGC 4 cut(s) 1196, 1247, 1477, 1554
SspI AATATT 2 cut(s) 1059, 1470
SspMI CTAG 5 cut(s) 1131, 1193, 1347, 1998, 2570
SstI GAGCTC 1 cut(s) 2778
StuI AGGCCT 3 cut(s) 189, 1631, 2825
StyD4I CCNGG 5 cut(s) 534, 837, 2558, 2968, 3072
StyI CCWWGG 4 cut(s) 1230, 1603, 2510, 3099
TaaI ACNGT 8 cut(s) 276, 401, 1001, 1261, 1337, 2817, 3154, 3500
TaiI ACGT 3 cut(s) 1709, 3097, 3118
TaqI TCGA 8 cut(s) 460, 721, 767, 1034, 1062, 1897, 2378, 3519
TaqII GACCGA 1 cut(s) 2236
TatI WGTACW 1 cut(s) 2100
TauI GCSGC 1 cut(s) 1556
Tru1I TTAA 7 cut(s) 21, 308, 888, 1305, 1572, 1958, 3410
Tru9I TTAA 7 cut(s) 21, 308, 888, 1305, 1572, 1958, 3410
TscAI CASTG 9 cut(s) 406, 590, 667, 1264, 1641, 1795, 2396, 3343, 3503
TseFI GTSAC 2 cut(s) 944, 3103
TseI GCWGC 8 cut(s) 1049, 1088, 1127, 1175, 1214, 1395, 2279, 2761
Tsp45I GTSAC 2 cut(s) 944, 3103
TspGWI ACGGA 2 cut(s) 215, 2002
TspRI CASTG 9 cut(s) 406, 590, 667, 1264, 1641, 1795, 2396, 3343, 3503
VpaK11BI GGWCC 2 cut(s) 2185, 2855
VspI ATTAAT 2 cut(s) 1305, 1958
XagI CCTNNNNNAGG 1 cut(s) 1607
XbaI TCTAGA 2 cut(s) 1997, 2569
XceI RCATGY 4 cut(s) 31, 494, 1325, 2690
XmiI GTMKAC 2 cut(s) 2028, 3519
XmnI GAANNNNTTC 4 cut(s) 204, 1454, 2825, 3132
XspI CTAG 5 cut(s) 1131, 1193, 1347, 1998, 2570
ZraI GACGTC 1 cut(s) 3116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.