Rmu_sc0003001.1_g000006

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003001.1
OG0000223
Physical Location & Seq
Forward (+)
41863 .. 47156
5294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003001.1_g000006.1.cds

Sequence Viewer

Length: 3165 bp
atggaaggttcacacaagaaaaagggtaaaagacccaaccttttggccgatactgtgttttcttggtcccttgatgacattttcaacgaacgtctcttcaagaacaaggtggaaaagattcctgaatcatttcactctgctgagcattacttcgggtgttatatgtatcctttattggaagaaacacgagcgcaagtccattcgagtatggaaacgatttacagagcaccatttgctaaagtagttgcttttgaaaaagccaagccatatgggacaaagctatataatatcaaggttgattactggcgaaacaggttcaatgagcgtggcaaggagccatacaaaactttgcctggtgatctttttgttttagcaaatgctaaacctgaaactgtttcagatttacaaagggtagggaggtcatgggcttttgcatcggtcactaaagtctcggaaaatgagaacaaggatgacactacttctctttattttaaagtcaaggcttccaaagagcttgaagtcgtaaagagcacaacaccactgtttatggtttttctagtgaacttgatcccaaatggaagaatatggaaagctttgcacatgtccaaaaacctgaagattatcaaggaggttctgtgcactgattctgtggctcagaaaaatctctgctctgaaaagaacaatgacattgtgaataagagattagttcagagtttatcatctggtttgaatgaatcccagactgggacagttctggcctgcattgaaatgctgcattctcgtgaaaagtctgctgtggaactaatttggggtcctcctggtactggaaaaactaaaactattgtgactctacttttaaccctgctacagatgaattgtaggactcttgtctgtgccccaacaaatgttgcaataactgaagttgcttctcgcgttgtgaagatggtgactgaagtagagtccagtgctttgttttgttctttgggagaagttcttctatttgggaataaggagcgactcaaagttggctcagacattgaagagatatatttagattaccgtctcaaaaggcttgttgagtgcttaggaccacggactggttggaggcattgctttgcttccatgatagattgtcttgaagatggtgtttctcactaccatacttttttggaaaatgagtttactattgagaaggaaccaaaggctataggtcaaatgaaagcgaaagaaagcagaattgtcgctaaagctggcaaggacacatgcaaaacttttctggaatttattagagacagatttgttactactgcatcacctctaagatattgtgtttctatcttctgtacccacatgccgaaaaattacatttccgtagatagtttccaaaacatggttttgcttatcaaattggttgactcctttgaatcattgttgtttcaagttaatgttgcttctgaagcacttgaagacattttctcacgttctgaagttgaagacatatcagagacatgtgctgataactcgtttcttctattcacatatagaagagaatgccttaaagtcttacacaatctatttgactctctgagtgaacttcaccttccggattttatgaatcaagagtctctaatggcattttgttttcaaagtgcttccttgatattttgcactgcatccagctcatataagttgcataaattggcaatggagcctctaagcattgtggttattgacgaagctgcgcaattgaaagagtgtgaatcaacaatcccccttcaactacctggtgtgaagcatgccgtgcttgttggtgatgaatgtcagttaccagctatagtgaacagcattgtttctgatgaagctggttttgcaagaagcttgcttgagaggttaagctcagttggtcactcaaaacacctcctaaatatgcaatttgcatctggtagaggtcattcaactgaaaccggtttgattgatatgattgattttgatgaggatgaagctcaatttaacgatatccaagattcatttcatgaagttccagcccattcttaccctcttttcatcacattgcataagttcttgattatgcttgatggaacattgagaaactcgtactttgaaagattccttgatgcaactgaggttactcatggtgaactacgaagttcaagatcaattgcctttcagacttttataaggacaaaggaagtcagttatgagaagtttagttcattatactggccgcattttaatacggagttaacaaagaagcttgatgcttcaagagtctttacagagattatttctcatataaaaggtggcctaggagctatagaagcgtgtgatggtagattgagtcgagaggattatgttcaactgtcagagagccgagcttccaatctaaccagccaagagagagaagttatatatgacatttttcagatgtatgaaaaaatgaagttggaatatggtgaatttgatcttgctgattttgttactgatcttcaccgtcgactcaggcatgaaaagtatgagggggatcatatggacttcgtttatattgatgaggttcaggatctcacaatgagtcaaattgccttgtttaaacacatgtgccacaatgttgaagagggttttgttttttcgggtgatactgctcaaacaattgcaaggggtattgatttcagatttcaagaattacgacatctattctacaagaaatttgtgttggagtcaagaaccaataagcacgatgaaagtaaggaaaagggccaaatctcagaaatttttcacttgactcaaaacttccgtacccatgctggaatcctcaagctatcacaaagcattgttgaacttctttatcattttttccccctttccattgacgttttaaaacctgaaagcagtttgatatatggagaagctccagtattgcttgaatctggagaaaatgaaaatgcaatcgtaaagatatttggaaatactagaaatatagttggatttggtgctgagcaggtaattttggtgcgagatgatagtgctcgaaatgagatatcaagacttgtagggaagcatgctcttgtgctaaccattgtcgagtgcaagggccttgagtttcaggtgattacagtacttgtttacttttttgttgcagagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

1054

Amino Acids

120.19

Weight (kDa)

5.91

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2198
Acc16I TGCGCA 1 cut(s) 1743
Acc36I ACCTGC 1 cut(s) 3007
AccB7I CCANNNNNTGG 2 cut(s) 1097, 1390
AccI GTMKAC 1 cut(s) 2515
AccII CGCG 1 cut(s) 933
AccIII TCCGGA 1 cut(s) 1603
AciI CCGC 1 cut(s) 2246
AclWI GGATC 3 cut(s) 562, 2550, 2586
AcoI YGGCCR 2 cut(s) 45, 2243
AcsI RAATTY 4 cut(s) 1280, 2477, 2723, 2787
AcuI CTGAAG 5 cut(s) 635, 939, 972, 1476, 1506
AfaI GTAC 5 cut(s) 823, 1345, 2117, 2815, 3135
AfiI CCNNNNNNNGG 4 cut(s) 744, 824, 1097, 1390
AflIII ACRYGT 3 cut(s) 600, 1508, 2613
AgeI ACCGGT 1 cut(s) 1964
AjnI CCWGG 3 cut(s) 352, 817, 1783
AjuI GAANNNNNNNTTGG 4 cut(s) 2013, 2045, 2714, 2746
Alw21I GWGCWC 4 cut(s) 229, 533, 641, 3046
Alw26I GTCTC 6 cut(s) 98, 454, 1067, 1284, 1499, 1629
Alw44I GTGCAC 1 cut(s) 637
AlwI GGATC 3 cut(s) 562, 2550, 2586
Aor13HI TCCGGA 1 cut(s) 1603
AoxI GGCC 6 cut(s) 45, 756, 2243, 2323, 2773, 3109
ApaLI GTGCAC 1 cut(s) 637
ApeKI GCWGC 2 cut(s) 772, 1739
ApoI RAATTY 4 cut(s) 1280, 2477, 2723, 2787
AsiGI ACCGGT 1 cut(s) 1964
Asp700I GAANNNNTTC 4 cut(s) 117, 129, 993, 2790
AspA2I CCTAGG 1 cut(s) 2326
AspLEI GCGC 2 cut(s) 193, 1744
AspS9I GGNCC 5 cut(s) 66, 812, 1088, 2773, 3109
AvaII GGWCC 3 cut(s) 66, 812, 1088
AvrII CCTAGG 1 cut(s) 2326
BaeGI GKGCMC 2 cut(s) 641, 898
BaeI ACNNNNGTAYC 2 cut(s) 2797, 2830
BauI CACGAG 2 cut(s) 186, 780
BbsI GAAGAC 2 cut(s) 1473, 1500
Bbv12I GWGCWC 4 cut(s) 229, 533, 641, 3046
BbvI GCAGC 2 cut(s) 759, 1726
BccI CCATC 4 cut(s) 937, 1136, 2090, 2342
BceAI ACGGC 1 cut(s) 1784
BcgI CGANNNNNNTGC 2 cut(s) 1222, 1256
BciT130I CCWGG 3 cut(s) 354, 819, 1785
BciVI GTATCC 1 cut(s) 177
BcoDI GTCTC 6 cut(s) 98, 454, 1067, 1284, 1499, 1629
BfaI CTAG 3 cut(s) 557, 2327, 2988
BfmI CTRYAG 4 cut(s) 866, 1206, 1833, 2334
BfuAI ACCTGC 1 cut(s) 3007
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 3 cut(s) 773, 1740, 2246
BlnI CCTAGG 1 cut(s) 2326
BlpI GCTNAGC 2 cut(s) 141, 3012
BlsI GCNGC 3 cut(s) 774, 1741, 2247
BmcAI AGTACT 1 cut(s) 3135
Bme1390I CCNGG 3 cut(s) 354, 819, 1785
Bme18I GGWCC 3 cut(s) 66, 812, 1088
BmgT120I GGNCC 5 cut(s) 66, 812, 1088, 2773, 3109
BmiI GGNNCC 5 cut(s) 68, 336, 813, 1197, 1710
BmrFI CCNGG 3 cut(s) 354, 819, 1785
BmrI ACTGGG 1 cut(s) 753
BmsI GCATC 6 cut(s) 443, 1319, 1682, 1946, 2125, 2269
BmuI ACTGGG 1 cut(s) 753
BoxI GACNNNNGTC 1 cut(s) 887
BpiI GAAGAC 2 cut(s) 1473, 1500
BpmI CTGGAG 2 cut(s) 2913, 2967
Bpu10I CCTNAGC 1 cut(s) 1084
Bpu1102I GCTNAGC 2 cut(s) 141, 3012
BpuEI CTTGAG 3 cut(s) 1904, 2816, 3134
BsaJI CCNNGG 2 cut(s) 1091, 2326
BsaWI WCCGGW 2 cut(s) 1603, 1964
BsaXI ACNNNNNCTCC 2 cut(s) 620, 650
Bsc4I CCNNNNNNNGG 4 cut(s) 744, 824, 1097, 1390
Bse118I RCCGGY 1 cut(s) 1964
Bse1I ACTGG 7 cut(s) 308, 748, 829, 963, 1102, 2246, 2930
Bse3DI GCAATG 3 cut(s) 1108, 1710, 2069
BseAI TCCGGA 1 cut(s) 1603
BseBI CCWGG 3 cut(s) 354, 819, 1785
BseDI CCNNGG 2 cut(s) 1091, 2326
BseGI GGATG 3 cut(s) 475, 1673, 2002
BseLI CCNNNNNNNGG 4 cut(s) 744, 824, 1097, 1390
BseMI GCAATG 3 cut(s) 1108, 1710, 2069
BseMII CTCAG 9 cut(s) 132, 668, 1044, 1577, 1911, 2133, 2533, 2796, 3003
BseNI ACTGG 7 cut(s) 308, 748, 829, 963, 1102, 2246, 2930
BseSI GKGCMC 2 cut(s) 641, 898
BseXI GCAGC 2 cut(s) 759, 1726
Bsh1236I CGCG 1 cut(s) 933
BshFI GGCC 6 cut(s) 47, 758, 2245, 2325, 2775, 3111
BshTI ACCGGT 1 cut(s) 1964
BsiHKAI GWGCWC 4 cut(s) 229, 533, 641, 3046
BsiSI CCGG 2 cut(s) 1604, 1965
BslFI GGGAC 3 cut(s) 52, 286, 760
BslI CCNNNNNNNGG 4 cut(s) 744, 824, 1097, 1390
BsmAI GTCTC 6 cut(s) 98, 454, 1067, 1284, 1499, 1629
BsmBI CGTCTC 2 cut(s) 98, 1067
BsmFI GGGAC 3 cut(s) 52, 286, 760
BsmI GAATGC 2 cut(s) 775, 1556
BsnI GGCC 6 cut(s) 47, 758, 2245, 2325, 2775, 3111
Bsp1286I GDGCHC 5 cut(s) 229, 533, 641, 898, 3046
Bsp13I TCCGGA 1 cut(s) 1603
Bsp143I GATC 7 cut(s) 358, 567, 2174, 2482, 2503, 2542, 2578
Bsp1720I GCTNAGC 2 cut(s) 141, 3012
BspACI CCGC 1 cut(s) 2246
BspANI GGCC 6 cut(s) 47, 758, 2245, 2325, 2775, 3111
BspCNI CTCAG 9 cut(s) 133, 667, 1043, 1578, 1910, 2134, 2532, 2795, 3004
BspEI TCCGGA 1 cut(s) 1603
BspFNI CGCG 1 cut(s) 933
BspHI TCATGA 1 cut(s) 2032
BspLI GGNNCC 5 cut(s) 68, 336, 813, 1197, 1710
BspMI ACCTGC 1 cut(s) 3007
BspPI GGATC 3 cut(s) 562, 2550, 2586
BsrDI GCAATG 3 cut(s) 1108, 1710, 2069
BsrFI RCCGGY 1 cut(s) 1964
BsrI ACTGG 7 cut(s) 308, 748, 829, 963, 1102, 2246, 2930
BssAI RCCGGY 1 cut(s) 1964
BssECI CCNNGG 2 cut(s) 1091, 2326
BssMI GATC 7 cut(s) 358, 567, 2174, 2482, 2503, 2542, 2578
BssSI CACGAG 2 cut(s) 186, 780
BssT1I CCWWGG 1 cut(s) 2326
Bst2BI CACGAG 2 cut(s) 186, 780
Bst2UI CCWGG 3 cut(s) 354, 819, 1785
Bst4CI ACNGT 8 cut(s) 55, 394, 543, 751, 1061, 2382, 2513, 3133
Bst6I CTCTTC 4 cut(s) 101, 1035, 1540, 2625
BstAPI GCANNNNNTGC 2 cut(s) 233, 1801
BstC8I GCNNGC 5 cut(s) 760, 1252, 1797, 1880, 3078
BstDSI CCRYGG 1 cut(s) 1091
BstF5I GGATG 3 cut(s) 475, 1673, 2002
BstFNI CGCG 1 cut(s) 933
BstHHI GCGC 2 cut(s) 193, 1744
BstKTI GATC 7 cut(s) 361, 570, 2177, 2485, 2506, 2545, 2581
BstMAI GTCTC 6 cut(s) 98, 454, 1067, 1284, 1499, 1629
BstMBI GATC 7 cut(s) 358, 567, 2174, 2482, 2503, 2542, 2578
BstMWI GCNNNNNNNGC 5 cut(s) 233, 1457, 1801, 1868, 2339
BstNI CCWGG 3 cut(s) 354, 819, 1785
BstNSI RCATGY 7 cut(s) 604, 1266, 1354, 1512, 1799, 2617, 3080
BstPAI GACNNNNGTC 1 cut(s) 887
BstSCI CCNGG 3 cut(s) 352, 817, 1783
BstSFI CTRYAG 4 cut(s) 866, 1206, 1833, 2334
BstSLI GKGCMC 2 cut(s) 641, 898
BstUI CGCG 1 cut(s) 933
BstV1I GCAGC 2 cut(s) 759, 1726
BstV2I GAAGAC 2 cut(s) 1473, 1500
BstX2I RGATCY 1 cut(s) 2578
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 1 cut(s) 2578
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 6 cut(s) 47, 758, 2245, 2325, 2775, 3111
BtgI CCRYGG 1 cut(s) 1091
BtsCI GGATG 3 cut(s) 475, 1673, 2002
BtsI GCAGTG 1 cut(s) 1668
BtsIMutI CAGTG 4 cut(s) 539, 639, 970, 1668
BveI ACCTGC 1 cut(s) 3007
Cac8I GCNNGC 5 cut(s) 760, 1252, 1797, 1880, 3078
CciI TCATGA 1 cut(s) 2032
CfoI GCGC 2 cut(s) 193, 1744
Cfr10I RCCGGY 1 cut(s) 1964
Cfr13I GGNCC 5 cut(s) 66, 812, 1088, 2773, 3109
CsiI ACCWGGT 1 cut(s) 1783
Csp6I GTAC 5 cut(s) 822, 1344, 2116, 2814, 3134
CspAI ACCGGT 1 cut(s) 1964
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviQI GTAC 5 cut(s) 822, 1344, 2116, 2814, 3134
DpnI GATC 7 cut(s) 360, 569, 2176, 2484, 2505, 2544, 2580
DpnII GATC 7 cut(s) 358, 567, 2174, 2482, 2503, 2542, 2578
DraI TTTAAA 3 cut(s) 493, 2608, 2895
EaeI YGGCCR 2 cut(s) 45, 2243
Eam1104I CTCTTC 4 cut(s) 101, 1035, 1540, 2625
EarI CTCTTC 4 cut(s) 101, 1035, 1540, 2625
Eco130I CCWWGG 1 cut(s) 2326
Eco32I GATATC 2 cut(s) 2017, 3057
Eco47I GGWCC 3 cut(s) 66, 812, 1088
Eco57I CTGAAG 5 cut(s) 635, 939, 972, 1476, 1506
EcoO109I RGGNCCY 2 cut(s) 812, 3109
EcoRII CCWGG 3 cut(s) 352, 817, 1783
EcoRV GATATC 2 cut(s) 2017, 3057
EcoT14I CCWWGG 1 cut(s) 2326
ErhI CCWWGG 1 cut(s) 2326
Esp3I CGTCTC 2 cut(s) 98, 1067
FaqI GGGAC 3 cut(s) 52, 286, 760
FauNDI CATATG 2 cut(s) 268, 2547
FblI GTMKAC 1 cut(s) 2515
Fnu4HI GCNGC 3 cut(s) 773, 1740, 2246
FokI GGATG 3 cut(s) 482, 1660, 2009
Fsp4HI GCNGC 3 cut(s) 773, 1740, 2246
FspBI CTAG 3 cut(s) 557, 2327, 2988
FspI TGCGCA 1 cut(s) 1743
GlaI GCGC 2 cut(s) 192, 1743
GluI GCNGC 3 cut(s) 773, 1740, 2246
GsuI CTGGAG 2 cut(s) 2913, 2967
HaeIII GGCC 6 cut(s) 47, 758, 2245, 2325, 2775, 3111
HapII CCGG 2 cut(s) 1604, 1965
HhaI GCGC 2 cut(s) 193, 1744
Hin6I GCGC 2 cut(s) 191, 1742
HinP1I GCGC 2 cut(s) 191, 1742
HincII GTYRAC 3 cut(s) 1414, 2265, 2516
HindII GTYRAC 3 cut(s) 1414, 2265, 2516
HindIII AAGCTT 3 cut(s) 591, 1876, 2273
HpaI GTTAAC 1 cut(s) 2265
HpaII CCGG 2 cut(s) 1604, 1965
Hpy99I CGWCG 1 cut(s) 2517
HpyAV CCTTC 3 cut(s) 1186, 1610, 1784
HpyCH4III ACNGT 8 cut(s) 55, 394, 543, 751, 1061, 2382, 2513, 3133
HpyCH4IV ACGT 3 cut(s) 91, 1480, 2889
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 1457, 1801, 1868, 2339
HpySE526I ACGT 3 cut(s) 91, 1480, 2889
HspAI GCGC 2 cut(s) 191, 1742
Kpn2I TCCGGA 1 cut(s) 1603
KspAI GTTAAC 1 cut(s) 2265
Kzo9I GATC 7 cut(s) 358, 567, 2174, 2482, 2503, 2542, 2578
LmnI GCTCC 5 cut(s) 334, 1012, 1708, 2330, 2932
Lsp1109I GCAGC 2 cut(s) 759, 1726
LweI GCATC 6 cut(s) 443, 1319, 1682, 1946, 2125, 2269
MabI ACCWGGT 1 cut(s) 1783
MaeI CTAG 3 cut(s) 557, 2327, 2988
MaeII ACGT 3 cut(s) 91, 1480, 2889
MaeIII GTNAC 8 cut(s) 439, 844, 946, 1300, 1824, 1904, 2146, 2497
MalI GATC 7 cut(s) 360, 569, 2176, 2484, 2505, 2544, 2580
MboI GATC 7 cut(s) 358, 567, 2174, 2482, 2503, 2542, 2578
MfeI CAATTG 3 cut(s) 1745, 2178, 2667
MflI RGATCY 1 cut(s) 2578
MhlI GDGCHC 5 cut(s) 229, 533, 641, 898, 3046
MmeI TCCRAC 4 cut(s) 1082, 2445, 2712, 2980
MroI TCCGGA 1 cut(s) 1603
MroXI GAANNNNTTC 4 cut(s) 117, 129, 993, 2790
MslI CAYNNNNRTG 2 cut(s) 767, 780
MspI CCGG 2 cut(s) 1604, 1965
MspR9I CCNGG 3 cut(s) 354, 819, 1785
MssI GTTTAAAC 1 cut(s) 2608
MunI CAATTG 3 cut(s) 1745, 2178, 2667
Mva1269I GAATGC 2 cut(s) 775, 1556
MvaI CCWGG 3 cut(s) 354, 819, 1785
MvnI CGCG 1 cut(s) 933
MwoI GCNNNNNNNGC 5 cut(s) 233, 1457, 1801, 1868, 2339
NdeI CATATG 2 cut(s) 268, 2547
NdeII GATC 7 cut(s) 358, 567, 2174, 2482, 2503, 2542, 2578
NlaIV GGNNCC 5 cut(s) 68, 336, 813, 1197, 1710
NmeAIII GCCGAG 1 cut(s) 2417
NmuCI GTSAC 4 cut(s) 439, 844, 946, 1904
NsbI TGCGCA 1 cut(s) 1743
NspI RCATGY 7 cut(s) 604, 1266, 1354, 1512, 1799, 2617, 3080
PaeI GCATGC 2 cut(s) 1799, 3080
PagI TCATGA 1 cut(s) 2032
PciI ACATGT 3 cut(s) 600, 1508, 2613
PctI GAATGC 2 cut(s) 775, 1556
PdmI GAANNNNTTC 4 cut(s) 117, 129, 993, 2790
PflMI CCANNNNNTGG 2 cut(s) 1097, 1390
PinAI ACCGGT 1 cut(s) 1964
PkrI GCNGC 3 cut(s) 774, 1741, 2247
PmeI GTTTAAAC 1 cut(s) 2608
PpuMI RGGWCCY 1 cut(s) 812
PscI ACATGT 3 cut(s) 600, 1508, 2613
PshAI GACNNNNGTC 1 cut(s) 887
PsiI TTATAA 1 cut(s) 2198
Psp5II RGGWCCY 1 cut(s) 812
Psp6I CCWGG 3 cut(s) 352, 817, 1783
PspGI CCWGG 3 cut(s) 352, 817, 1783
PspN4I GGNNCC 5 cut(s) 68, 336, 813, 1197, 1710
PspPI GGNCC 5 cut(s) 66, 812, 1088, 2773, 3109
PspPPI RGGWCCY 1 cut(s) 812
PsuI RGATCY 1 cut(s) 2578
RsaI GTAC 5 cut(s) 823, 1345, 2117, 2815, 3135
RsaNI GTAC 5 cut(s) 822, 1344, 2116, 2814, 3134
RseI CAYNNNNRTG 2 cut(s) 767, 780
SalI GTCGAC 1 cut(s) 2514
SatI GCNGC 3 cut(s) 773, 1740, 2246
Sau3AI GATC 7 cut(s) 358, 567, 2174, 2482, 2503, 2542, 2578
Sau96I GGNCC 5 cut(s) 66, 812, 1088, 2773, 3109
ScaI AGTACT 1 cut(s) 3135
ScrFI CCNGG 3 cut(s) 354, 819, 1785
SduI GDGCHC 5 cut(s) 229, 533, 641, 898, 3046
SexAI ACCWGGT 1 cut(s) 1783
SfaNI GCATC 6 cut(s) 443, 1319, 1682, 1946, 2125, 2269
SfcI CTRYAG 4 cut(s) 866, 1206, 1833, 2334
SinI GGWCC 3 cut(s) 66, 812, 1088
SmiMI CAYNNNNRTG 2 cut(s) 767, 780
SmlI CTYRAG 3 cut(s) 1883, 2831, 3113
SmoI CTYRAG 3 cut(s) 1883, 2831, 3113
SphI GCATGC 2 cut(s) 1799, 3080
SsiI CCGC 1 cut(s) 2246
SspMI CTAG 3 cut(s) 557, 2327, 2988
StyD4I CCNGG 3 cut(s) 352, 817, 1783
StyI CCWWGG 1 cut(s) 2326
TaaI ACNGT 8 cut(s) 55, 394, 543, 751, 1061, 2382, 2513, 3133
TaiI ACGT 3 cut(s) 94, 1483, 2892
TaqI TCGA 5 cut(s) 203, 2362, 2515, 3046, 3099
TaqII GACCGA 1 cut(s) 427
TatI WGTACW 1 cut(s) 3133
TauI GCSGC 1 cut(s) 2248
TscAI CASTG 4 cut(s) 546, 646, 970, 1675
TseFI GTSAC 4 cut(s) 439, 844, 946, 1904
TseI GCWGC 2 cut(s) 772, 1739
Tsp45I GTSAC 4 cut(s) 439, 844, 946, 1904
TspGWI ACGGA 4 cut(s) 1108, 1360, 2273, 2801
TspRI CASTG 4 cut(s) 546, 646, 970, 1675
Van91I CCANNNNNTGG 2 cut(s) 1097, 1390
VneI GTGCAC 1 cut(s) 637
VpaK11BI GGWCC 3 cut(s) 66, 812, 1088
XapI RAATTY 4 cut(s) 1280, 2477, 2723, 2787
XceI RCATGY 7 cut(s) 604, 1266, 1354, 1512, 1799, 2617, 3080
XcmI CCANNNNNNNNNTGG 1 cut(s) 1098
XmaJI CCTAGG 1 cut(s) 2326
XmiI GTMKAC 1 cut(s) 2515
XmnI GAANNNNTTC 4 cut(s) 117, 129, 993, 2790
XspI CTAG 3 cut(s) 557, 2327, 2988
ZrmI AGTACT 1 cut(s) 3135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.