TPR and ankyrin repeat-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 366 |
| AciI | CCGC | 3 cut(s) | 1336, 1478, 1837 |
| AcoI | YGGCCR | 1 cut(s) | 1887 |
| AcsI | RAATTY | 6 cut(s) | 187, 240, 376, 706, 1087, 1342 |
| AcuI | CTGAAG | 2 cut(s) | 59, 809 |
| AfaI | GTAC | 1 cut(s) | 1747 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 875, 989, 1495, 1617, 1618, 1644, 1645, 1900 |
| AflIII | ACRYGT | 2 cut(s) | 861, 1209 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1210 |
| AjiI | CACGTC | 1 cut(s) | 1130 |
| AjnI | CCWGG | 2 cut(s) | 1216, 1320 |
| Alw21I | GWGCWC | 1 cut(s) | 1678 |
| Alw26I | GTCTC | 6 cut(s) | 9, 92, 193, 592, 937, 1112 |
| Alw44I | GTGCAC | 1 cut(s) | 1674 |
| Ama87I | CYCGRG | 1 cut(s) | 1022 |
| AoxI | GGCC | 4 cut(s) | 32, 60, 1095, 1887 |
| ApaLI | GTGCAC | 1 cut(s) | 1674 |
| ApeKI | GCWGC | 9 cut(s) | 21, 604, 617, 1259, 1682, 1685, 1787, 1790, 1934 |
| ApoI | RAATTY | 6 cut(s) | 187, 240, 376, 706, 1087, 1342 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 65, 97 |
| AseI | ATTAAT | 1 cut(s) | 1401 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1245 |
| AspA2I | CCTAGG | 1 cut(s) | 794 |
| AspS9I | GGNCC | 2 cut(s) | 61, 1095 |
| AsuC2I | CCSGG | 1 cut(s) | 967 |
| AsuHPI | GGTGA | 3 cut(s) | 314, 1206, 1359 |
| AvaI | CYCGRG | 1 cut(s) | 1022 |
| AvrII | CCTAGG | 1 cut(s) | 794 |
| AxyI | CCTNAGG | 2 cut(s) | 1613, 1640 |
| BaeGI | GKGCMC | 1 cut(s) | 1678 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 193, 226 |
| BauI | CACGAG | 1 cut(s) | 528 |
| BbsI | GAAGAC | 1 cut(s) | 565 |
| Bbv12I | GWGCWC | 1 cut(s) | 1678 |
| BbvI | GCAGC | 8 cut(s) | 33, 604, 616, 1271, 1669, 1697, 1774, 1802 |
| BccI | CCATC | 3 cut(s) | 590, 869, 1877 |
| BceAI | ACGGC | 2 cut(s) | 967, 1902 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1034, 1068 |
| BciT130I | CCWGG | 2 cut(s) | 1218, 1322 |
| BciVI | GTATCC | 1 cut(s) | 1537 |
| BclI | TGATCA | 1 cut(s) | 1014 |
| BcnI | CCSGG | 1 cut(s) | 967 |
| BcoDI | GTCTC | 6 cut(s) | 9, 92, 193, 592, 937, 1112 |
| BfaI | CTAG | 3 cut(s) | 795, 1073, 1942 |
| BfmI | CTRYAG | 3 cut(s) | 818, 1683, 1788 |
| BfuI | GTATCC | 1 cut(s) | 1537 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 68 |
| BlnI | CCTAGG | 1 cut(s) | 794 |
| BlpI | GCTNAGC | 2 cut(s) | 1056, 1581 |
| Bme1390I | CCNGG | 3 cut(s) | 967, 1218, 1322 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1210 |
| BmeT110I | CYCGRG | 1 cut(s) | 1022 |
| BmgBI | CACGTC | 1 cut(s) | 1130 |
| BmgT120I | GGNCC | 2 cut(s) | 61, 1095 |
| BmrFI | CCNGG | 3 cut(s) | 967, 1218, 1322 |
| BmsI | GCATC | 5 cut(s) | 238, 808, 913, 1392, 1855 |
| BpiI | GAAGAC | 1 cut(s) | 565 |
| BpmI | CTGGAG | 1 cut(s) | 417 |
| Bpu10I | CCTNAGC | 1 cut(s) | 472 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1056, 1581 |
| BpuEI | CTTGAG | 3 cut(s) | 1254, 1676, 1781 |
| BpuMI | CCSGG | 1 cut(s) | 967 |
| Bsa29I | ATCGAT | 1 cut(s) | 1363 |
| BsaAI | YACGTR | 1 cut(s) | 1147 |
| BsaBI | GATNNNNATC | 2 cut(s) | 252, 501 |
| BsaI | GGTCTC | 1 cut(s) | 592 |
| BsaJI | CCNNGG | 2 cut(s) | 794, 1320 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 875, 989, 1495, 1617, 1618, 1644, 1645, 1900 |
| Bse1I | ACTGG | 5 cut(s) | 366, 506, 1033, 1466, 1894 |
| Bse21I | CCTNAGG | 2 cut(s) | 1613, 1640 |
| Bse3DI | GCAATG | 1 cut(s) | 1017 |
| Bse8I | GATNNNNATC | 2 cut(s) | 252, 501 |
| BseBI | CCWGG | 2 cut(s) | 1218, 1322 |
| BseCI | ATCGAT | 1 cut(s) | 1363 |
| BseDI | CCNNGG | 2 cut(s) | 794, 1320 |
| BseGI | GGATG | 6 cut(s) | 253, 1330, 1383, 1485, 1705, 1909 |
| BseJI | GATNNNNATC | 2 cut(s) | 252, 501 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 875, 989, 1495, 1617, 1618, 1644, 1645, 1900 |
| BseMI | GCAATG | 1 cut(s) | 1017 |
| BseMII | CTCAG | 8 cut(s) | 120, 209, 635, 834, 932, 1572, 1754, 1904 |
| BseNI | ACTGG | 5 cut(s) | 366, 506, 1033, 1466, 1894 |
| BseRI | GAGGAG | 3 cut(s) | 329, 512, 1582 |
| BseSI | GKGCMC | 1 cut(s) | 1678 |
| BseXI | GCAGC | 8 cut(s) | 33, 604, 616, 1271, 1669, 1697, 1774, 1802 |
| BshFI | GGCC | 4 cut(s) | 34, 62, 1097, 1889 |
| BshVI | ATCGAT | 1 cut(s) | 1363 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1678 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1022 |
| BsiSI | CCGG | 1 cut(s) | 967 |
| BslFI | GGGAC | 2 cut(s) | 721, 1039 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 875, 989, 1495, 1617, 1618, 1644, 1645, 1900 |
| BsmAI | GTCTC | 6 cut(s) | 9, 92, 193, 592, 937, 1112 |
| BsmFI | GGGAC | 2 cut(s) | 721, 1039 |
| BsmI | GAATGC | 3 cut(s) | 443, 940, 1783 |
| BsnI | GGCC | 4 cut(s) | 34, 62, 1097, 1889 |
| Bso31I | GGTCTC | 1 cut(s) | 592 |
| BsoBI | CYCGRG | 1 cut(s) | 1022 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1678 |
| Bsp1407I | TGTACA | 1 cut(s) | 1745 |
| Bsp143I | GATC | 7 cut(s) | 304, 496, 645, 747, 1014, 1360, 1364 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1056, 1581 |
| BspACI | CCGC | 3 cut(s) | 1336, 1478, 1837 |
| BspANI | GGCC | 4 cut(s) | 34, 62, 1097, 1889 |
| BspCNI | CTCAG | 8 cut(s) | 121, 208, 634, 835, 933, 1573, 1755, 1905 |
| BspDI | ATCGAT | 1 cut(s) | 1363 |
| BspHI | TCATGA | 3 cut(s) | 112, 493, 1630 |
| BspMAI | CTGCAG | 2 cut(s) | 1687, 1792 |
| BspTNI | GGTCTC | 1 cut(s) | 592 |
| BsrDI | GCAATG | 1 cut(s) | 1017 |
| BsrGI | TGTACA | 1 cut(s) | 1745 |
| BsrI | ACTGG | 5 cut(s) | 366, 506, 1033, 1466, 1894 |
| BssECI | CCNNGG | 2 cut(s) | 794, 1320 |
| BssMI | GATC | 7 cut(s) | 304, 496, 645, 747, 1014, 1360, 1364 |
| BssNAI | GTATAC | 1 cut(s) | 367 |
| BssSI | CACGAG | 1 cut(s) | 528 |
| BssT1I | CCWWGG | 1 cut(s) | 794 |
| Bst1107I | GTATAC | 1 cut(s) | 367 |
| Bst2BI | CACGAG | 1 cut(s) | 528 |
| Bst2UI | CCWGG | 2 cut(s) | 1218, 1322 |
| Bst4CI | ACNGT | 1 cut(s) | 1409 |
| Bst6I | CTCTTC | 1 cut(s) | 318 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1682, 1787 |
| BstAUI | TGTACA | 1 cut(s) | 1745 |
| BstBAI | YACGTR | 1 cut(s) | 1147 |
| BstC8I | GCNNGC | 1 cut(s) | 32 |
| BstF5I | GGATG | 6 cut(s) | 253, 1330, 1383, 1485, 1705, 1909 |
| BstKTI | GATC | 7 cut(s) | 307, 499, 648, 750, 1017, 1363, 1367 |
| BstMAI | GTCTC | 6 cut(s) | 9, 92, 193, 592, 937, 1112 |
| BstMBI | GATC | 7 cut(s) | 304, 496, 645, 747, 1014, 1360, 1364 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 27, 68, 1477, 1682, 1787 |
| BstNI | CCWGG | 2 cut(s) | 1218, 1322 |
| BstNSI | RCATGY | 2 cut(s) | 865, 1213 |
| BstSCI | CCNGG | 3 cut(s) | 965, 1216, 1320 |
| BstSFI | CTRYAG | 3 cut(s) | 818, 1683, 1788 |
| BstSLI | GKGCMC | 1 cut(s) | 1678 |
| BstV1I | GCAGC | 8 cut(s) | 33, 604, 616, 1271, 1669, 1697, 1774, 1802 |
| BstV2I | GAAGAC | 1 cut(s) | 565 |
| BstZ17I | GTATAC | 1 cut(s) | 367 |
| Bsu15I | ATCGAT | 1 cut(s) | 1363 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1613, 1640 |
| BsuI | GTATCC | 1 cut(s) | 1537 |
| BsuRI | GGCC | 4 cut(s) | 34, 62, 1097, 1889 |
| BsuTUI | ATCGAT | 1 cut(s) | 1363 |
| BtgZI | GCGATG | 1 cut(s) | 433 |
| BtrI | CACGTC | 1 cut(s) | 1130 |
| BtsCI | GGATG | 6 cut(s) | 253, 1330, 1383, 1485, 1705, 1909 |
| BtsI | GCAGTG | 1 cut(s) | 768 |
| BtsIMutI | CAGTG | 4 cut(s) | 126, 359, 768, 1901 |
| Cac8I | GCNNGC | 1 cut(s) | 32 |
| CciI | TCATGA | 3 cut(s) | 112, 493, 1630 |
| Cfr13I | GGNCC | 2 cut(s) | 61, 1095 |
| ClaI | ATCGAT | 1 cut(s) | 1363 |
| CsiI | ACCWGGT | 1 cut(s) | 1216 |
| Csp6I | GTAC | 1 cut(s) | 1746 |
| CviAII | CATG | 6 cut(s) | 113, 494, 862, 1210, 1631, 1882 |
| CviQI | GTAC | 1 cut(s) | 1746 |
| DpnI | GATC | 7 cut(s) | 306, 498, 647, 749, 1016, 1362, 1366 |
| DpnII | GATC | 7 cut(s) | 304, 496, 645, 747, 1014, 1360, 1364 |
| DraI | TTTAAA | 1 cut(s) | 930 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1210 |
| EaeI | YGGCCR | 1 cut(s) | 1887 |
| Eam1104I | CTCTTC | 1 cut(s) | 318 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1210 |
| EarI | CTCTTC | 1 cut(s) | 318 |
| Eco130I | CCWWGG | 1 cut(s) | 794 |
| Eco31I | GGTCTC | 1 cut(s) | 592 |
| Eco32I | GATATC | 1 cut(s) | 1317 |
| Eco57I | CTGAAG | 2 cut(s) | 59, 809 |
| Eco81I | CCTNAGG | 2 cut(s) | 1613, 1640 |
| Eco88I | CYCGRG | 1 cut(s) | 1022 |
| EcoO109I | RGGNCCY | 2 cut(s) | 61, 1095 |
| EcoRI | GAATTC | 2 cut(s) | 187, 706 |
| EcoRII | CCWGG | 2 cut(s) | 1216, 1320 |
| EcoRV | GATATC | 1 cut(s) | 1317 |
| EcoT14I | CCWWGG | 1 cut(s) | 794 |
| ErhI | CCWWGG | 1 cut(s) | 794 |
| FaeI | CATG | 6 cut(s) | 116, 497, 865, 1213, 1634, 1885 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1371, 1403 |
| FaqI | GGGAC | 2 cut(s) | 721, 1039 |
| FatI | CATG | 6 cut(s) | 112, 493, 861, 1209, 1630, 1881 |
| FauI | CCCGC | 1 cut(s) | 1830 |
| FbaI | TGATCA | 1 cut(s) | 1014 |
| FblI | GTMKAC | 1 cut(s) | 366 |
| FokI | GGATG | 6 cut(s) | 260, 1337, 1370, 1472, 1712, 1916 |
| FspBI | CTAG | 3 cut(s) | 795, 1073, 1942 |
| GsuI | CTGGAG | 1 cut(s) | 417 |
| HaeIII | GGCC | 4 cut(s) | 34, 62, 1097, 1889 |
| HapII | CCGG | 1 cut(s) | 967 |
| Hin1II | CATG | 6 cut(s) | 116, 497, 865, 1213, 1634, 1885 |
| HincII | GTYRAC | 2 cut(s) | 1186, 1606 |
| HindII | GTYRAC | 2 cut(s) | 1186, 1606 |
| HindIII | AAGCTT | 2 cut(s) | 674, 1058 |
| HpaII | CCGG | 1 cut(s) | 967 |
| HphI | GGTGA | 3 cut(s) | 314, 1206, 1359 |
| Hpy166II | GTNNAC | 6 cut(s) | 367, 1186, 1525, 1606, 1676, 1748 |
| Hpy8I | GTNNAC | 6 cut(s) | 367, 1186, 1525, 1606, 1676, 1748 |
| HpyCH4III | ACNGT | 1 cut(s) | 1409 |
| HpyCH4IV | ACGT | 2 cut(s) | 1129, 1146 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 27, 68, 1477, 1682, 1787 |
| HpySE526I | ACGT | 2 cut(s) | 1129, 1146 |
| Hsp92II | CATG | 6 cut(s) | 116, 497, 865, 1213, 1634, 1885 |
| Ksp22I | TGATCA | 1 cut(s) | 1014 |
| Kzo9I | GATC | 7 cut(s) | 304, 496, 645, 747, 1014, 1360, 1364 |
| LmnI | GCTCC | 2 cut(s) | 525, 1569 |
| Lsp1109I | GCAGC | 8 cut(s) | 33, 604, 616, 1271, 1669, 1697, 1774, 1802 |
| LweI | GCATC | 5 cut(s) | 238, 808, 913, 1392, 1855 |
| MabI | ACCWGGT | 1 cut(s) | 1216 |
| MaeI | CTAG | 3 cut(s) | 795, 1073, 1942 |
| MaeII | ACGT | 2 cut(s) | 1129, 1146 |
| MaeIII | GTNAC | 4 cut(s) | 81, 829, 1212, 1595 |
| MalI | GATC | 7 cut(s) | 306, 498, 647, 749, 1016, 1362, 1366 |
| MboI | GATC | 7 cut(s) | 304, 496, 645, 747, 1014, 1360, 1364 |
| MfeI | CAATTG | 1 cut(s) | 182 |
| MhlI | GDGCHC | 1 cut(s) | 1678 |
| MlyI | GAGTC | 3 cut(s) | 326, 1070, 1636 |
| MmeI | TCCRAC | 1 cut(s) | 634 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1245 |
| MseI | TTAA | 6 cut(s) | 146, 464, 929, 1179, 1340, 1401 |
| MslI | CAYNNNNRTG | 1 cut(s) | 405 |
| MspA1I | CMGCKG | 1 cut(s) | 617 |
| MspI | CCGG | 1 cut(s) | 967 |
| MspR9I | CCNGG | 3 cut(s) | 967, 1218, 1322 |
| MunI | CAATTG | 1 cut(s) | 182 |
| Mva1269I | GAATGC | 3 cut(s) | 443, 940, 1783 |
| MvaI | CCWGG | 2 cut(s) | 1218, 1322 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 27, 68, 1477, 1682, 1787 |
| NciI | CCSGG | 1 cut(s) | 967 |
| NdeII | GATC | 7 cut(s) | 304, 496, 645, 747, 1014, 1360, 1364 |
| NlaIII | CATG | 6 cut(s) | 116, 497, 865, 1213, 1634, 1885 |
| NmuCI | GTSAC | 3 cut(s) | 81, 1212, 1595 |
| NspI | RCATGY | 2 cut(s) | 865, 1213 |
| PagI | TCATGA | 3 cut(s) | 112, 493, 1630 |
| PciI | ACATGT | 2 cut(s) | 861, 1209 |
| PctI | GAATGC | 3 cut(s) | 443, 940, 1783 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1245 |
| PfeI | GAWTC | 9 cut(s) | 356, 394, 410, 502, 657, 713, 776, 1634, 1709 |
| PleI | GAGTC | 3 cut(s) | 325, 1070, 1635 |
| PpsI | GAGTC | 3 cut(s) | 325, 1070, 1635 |
| Ppu21I | YACGTR | 1 cut(s) | 1147 |
| PscI | ACATGT | 2 cut(s) | 861, 1209 |
| PshBI | ATTAAT | 1 cut(s) | 1401 |
| Psp6I | CCWGG | 2 cut(s) | 1216, 1320 |
| PspGI | CCWGG | 2 cut(s) | 1216, 1320 |
| PspPI | GGNCC | 2 cut(s) | 61, 1095 |
| PstI | CTGCAG | 2 cut(s) | 1687, 1792 |
| PvuII | CAGCTG | 1 cut(s) | 617 |
| RsaI | GTAC | 1 cut(s) | 1747 |
| RsaNI | GTAC | 1 cut(s) | 1746 |
| RseI | CAYNNNNRTG | 1 cut(s) | 405 |
| SaqAI | TTAA | 6 cut(s) | 146, 464, 929, 1179, 1340, 1401 |
| Sau3AI | GATC | 7 cut(s) | 304, 496, 645, 747, 1014, 1360, 1364 |
| Sau96I | GGNCC | 2 cut(s) | 61, 1095 |
| SchI | GAGTC | 3 cut(s) | 326, 1070, 1636 |
| ScrFI | CCNGG | 3 cut(s) | 967, 1218, 1322 |
| SduI | GDGCHC | 1 cut(s) | 1678 |
| SexAI | ACCWGGT | 1 cut(s) | 1216 |
| SfaNI | GCATC | 5 cut(s) | 238, 808, 913, 1392, 1855 |
| SfcI | CTRYAG | 3 cut(s) | 818, 1683, 1788 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 405 |
| SmlI | CTYRAG | 3 cut(s) | 1269, 1691, 1796 |
| SmoI | CTYRAG | 3 cut(s) | 1269, 1691, 1796 |
| SsiI | CCGC | 3 cut(s) | 1336, 1478, 1837 |
| SspI | AATATT | 1 cut(s) | 629 |
| SspMI | CTAG | 3 cut(s) | 795, 1073, 1942 |
| StyD4I | CCNGG | 3 cut(s) | 965, 1216, 1320 |
| StyI | CCWWGG | 1 cut(s) | 794 |
| TaaI | ACNGT | 1 cut(s) | 1409 |
| TaiI | ACGT | 2 cut(s) | 1132, 1149 |
| TaqI | TCGA | 4 cut(s) | 235, 1363, 1377, 1492 |
| TatI | WGTACW | 1 cut(s) | 1745 |
| TauI | GCSGC | 1 cut(s) | 1338 |
| TfiI | GAWTC | 9 cut(s) | 356, 394, 410, 502, 657, 713, 776, 1634, 1709 |
| Tru1I | TTAA | 6 cut(s) | 146, 464, 929, 1179, 1340, 1401 |
| Tru9I | TTAA | 6 cut(s) | 146, 464, 929, 1179, 1340, 1401 |
| TscAI | CASTG | 4 cut(s) | 133, 366, 768, 1901 |
| TseFI | GTSAC | 3 cut(s) | 81, 1212, 1595 |
| TseI | GCWGC | 9 cut(s) | 21, 604, 617, 1259, 1682, 1685, 1787, 1790, 1934 |
| Tsp45I | GTSAC | 3 cut(s) | 81, 1212, 1595 |
| TspDTI | ATGAA | 5 cut(s) | 101, 423, 1090, 1336, 1341 |
| TspGWI | ACGGA | 1 cut(s) | 1157 |
| TspRI | CASTG | 4 cut(s) | 133, 366, 768, 1901 |
| VneI | GTGCAC | 1 cut(s) | 1674 |
| VspI | ATTAAT | 1 cut(s) | 1401 |
| XapI | RAATTY | 6 cut(s) | 187, 240, 376, 706, 1087, 1342 |
| XceI | RCATGY | 2 cut(s) | 865, 1213 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 358 |
| XmaJI | CCTAGG | 1 cut(s) | 794 |
| XmiI | GTMKAC | 1 cut(s) | 366 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1245 |
| XspI | CTAG | 3 cut(s) | 795, 1073, 1942 |