TPR and ankyrin repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF6469 | PF20073 | 66 - 207 | 3.3e-46 | Domain of unknown function (DUF6469) |
| AAA_11 | PF13086 | 245 - 622 | 1.9e-32 | AAA domain |
| AAA_19 | PF13245 | 265 - 618 | 3.7e-09 | AAA domain |
| AAA_12 | PF13087 | 630 - 826 | 5.7e-57 | AAA domain |
| UvrD-helicase | PF00580 | 1343 - 1432 | 2.1e-08 | UvrD/REP helicase N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 2090, 2363, 3824 |
| AarI | CACCTGC | 2 cut(s) | 4633, 5810 |
| AatII | GACGTC | 1 cut(s) | 2714 |
| Acc36I | ACCTGC | 2 cut(s) | 4633, 5810 |
| AccB1I | GGYRCC | 1 cut(s) | 3405 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1109, 2072 |
| AccBSI | CCGCTC | 1 cut(s) | 7034 |
| AccI | GTMKAC | 3 cut(s) | 2589, 4141, 7886 |
| AcoI | YGGCCR | 4 cut(s) | 2574, 3074, 3781, 5130 |
| AcuI | CTGAAG | 7 cut(s) | 1227, 2384, 2771, 3495, 5253, 6210, 7860 |
| AcyI | GRCGYC | 1 cut(s) | 2711 |
| AdeI | CACNNNGTG | 1 cut(s) | 5139 |
| AflII | CTTAAG | 1 cut(s) | 7487 |
| AflIII | ACRYGT | 2 cut(s) | 1813, 3541 |
| AhlI | ACTAGT | 1 cut(s) | 6229 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 3642, 3674, 3971, 4003, 4340, 4372, 5724, 5756 |
| AleI | CACNNNNGTG | 2 cut(s) | 545, 7894 |
| Alw21I | GWGCWC | 4 cut(s) | 160, 196, 5608, 7793 |
| Alw26I | GTCTC | 9 cut(s) | 11, 2462, 2764, 2786, 2981, 5465, 5960, 6061, 6469 |
| Alw44I | GTGCAC | 2 cut(s) | 192, 5604 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 551, 3356, 6694 |
| Ama87I | CYCGRG | 2 cut(s) | 153, 6899 |
| ApaLI | GTGCAC | 2 cut(s) | 192, 5604 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 84, 96, 1572, 2696, 3386, 7461 |
| AspA2I | CCTAGG | 1 cut(s) | 2774 |
| AspLEI | GCGC | 1 cut(s) | 2784 |
| AsuII | TTCGAA | 2 cut(s) | 4787, 4979 |
| AvaI | CYCGRG | 2 cut(s) | 153, 6899 |
| AvaII | GGWCC | 7 cut(s) | 33, 818, 1100, 1259, 2075, 2608, 5178 |
| AvrII | CCTAGG | 1 cut(s) | 2774 |
| BaeGI | GKGCMC | 3 cut(s) | 196, 904, 5608 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 4423, 4456, 7224, 7257 |
| BalI | TGGCCA | 4 cut(s) | 2576, 3076, 3783, 5132 |
| BamHI | GGATCC | 2 cut(s) | 2007, 3106 |
| BanI | GGYRCC | 1 cut(s) | 3405 |
| BanII | GRGCYC | 3 cut(s) | 160, 6616, 7793 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 2727, 2759, 2794, 2826, 4116, 4148 |
| BauI | CACGAG | 2 cut(s) | 6269, 7358 |
| BbsI | GAAGAC | 9 cut(s) | 48, 504, 789, 932, 2355, 3368, 7139, 7346, 7848 |
| Bbv12I | GWGCWC | 4 cut(s) | 160, 196, 5608, 7793 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 780, 814 |
| BciVI | GTATCC | 2 cut(s) | 144, 5562 |
| BclI | TGATCA | 3 cut(s) | 2557, 4168, 6165 |
| BcoDI | GTCTC | 9 cut(s) | 11, 2462, 2764, 2786, 2981, 5465, 5960, 6061, 6469 |
| BcuI | ACTAGT | 1 cut(s) | 6229 |
| BfmI | CTRYAG | 8 cut(s) | 1592, 3960, 4965, 5280, 5421, 6528, 6695, 7251 |
| BfrI | CTTAAG | 1 cut(s) | 7487 |
| BfuAI | ACCTGC | 2 cut(s) | 4633, 5810 |
| BfuI | GTATCC | 2 cut(s) | 144, 5562 |
| BglII | AGATCT | 3 cut(s) | 58, 4204, 5150 |
| BlnI | CCTAGG | 1 cut(s) | 2774 |
| BlpI | GCTNAGC | 1 cut(s) | 3983 |
| BmcAI | AGTACT | 5 cut(s) | 116, 2175, 2494, 4669, 7000 |
| Bme18I | GGWCC | 7 cut(s) | 33, 818, 1100, 1259, 2075, 2608, 5178 |
| BmeT110I | CYCGRG | 2 cut(s) | 153, 6899 |
| BmiI | GGNNCC | 9 cut(s) | 35, 819, 1728, 2009, 2336, 3108, 3407, 3872, 4319 |
| BmrI | ACTGGG | 4 cut(s) | 573, 759, 3091, 3366 |
| BmuI | ACTGGG | 4 cut(s) | 573, 759, 3091, 3366 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3368 |
| BpiI | GAAGAC | 9 cut(s) | 48, 504, 789, 932, 2355, 3368, 7139, 7346, 7848 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 5447, 5479, 6598, 6630, 6661, 6693 |
| BpmI | CTGGAG | 6 cut(s) | 2788, 2975, 3005, 4593, 7111, 7752 |
| Bpu10I | CCTNAGC | 2 cut(s) | 660, 3516 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3983 |
| Bpu14I | TTCGAA | 2 cut(s) | 4787, 4979 |
| BpuEI | CTTGAG | 6 cut(s) | 1857, 2235, 4130, 4760, 6663, 7532 |
| BsaHI | GRCGYC | 1 cut(s) | 2711 |
| BsaI | GGTCTC | 2 cut(s) | 2764, 6469 |
| BsaWI | WCCGGW | 2 cut(s) | 2004, 4555 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 692, 722, 5077, 5107 |
| Bse118I | RCCGGY | 1 cut(s) | 7877 |
| BseRI | GAGGAG | 7 cut(s) | 2126, 3638, 4985, 5093, 5571, 5574, 7513 |
| BseSI | GKGCMC | 3 cut(s) | 196, 904, 5608 |
| BseYI | CCCAGC | 3 cut(s) | 380, 610, 7435 |
| BsgI | GTGCAG | 3 cut(s) | 1743, 3440, 4656 |
| BshNI | GGYRCC | 1 cut(s) | 3405 |
| BsiHKAI | GWGCWC | 4 cut(s) | 160, 196, 5608, 7793 |
| BsiHKCI | CYCGRG | 2 cut(s) | 153, 6899 |
| BsiSI | CCGG | 3 cut(s) | 2005, 4556, 7878 |
| BslFI | GGGAC | 4 cut(s) | 19, 841, 2954, 7304 |
| BsmAI | GTCTC | 9 cut(s) | 11, 2462, 2764, 2786, 2981, 5465, 5960, 6061, 6469 |
| BsmFI | GGGAC | 4 cut(s) | 19, 841, 2954, 7304 |
| BsmI | GAATGC | 8 cut(s) | 780, 1253, 1383, 1574, 1841, 1962, 6184, 7913 |
| Bso31I | GGTCTC | 2 cut(s) | 2764, 6469 |
| BsoBI | CYCGRG | 2 cut(s) | 153, 6899 |
| Bsp119I | TTCGAA | 2 cut(s) | 4787, 4979 |
| Bsp1286I | GDGCHC | 6 cut(s) | 160, 196, 904, 5608, 6616, 7793 |
| Bsp1407I | TGTACA | 1 cut(s) | 4761 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3983 |
| Bsp19I | CCATGG | 2 cut(s) | 389, 6965 |
| BspHI | TCATGA | 2 cut(s) | 1554, 3661 |
| BspLI | GGNNCC | 9 cut(s) | 35, 819, 1728, 2009, 2336, 3108, 3407, 3872, 4319 |
| BspMAI | CTGCAG | 2 cut(s) | 5425, 6699 |
| BspMI | ACCTGC | 2 cut(s) | 4633, 5810 |
| BspQI | GCTCTTC | 2 cut(s) | 2815, 7781 |
| BspT104I | TTCGAA | 2 cut(s) | 4787, 4979 |
| BspT107I | GGYRCC | 1 cut(s) | 3405 |
| BspTI | CTTAAG | 1 cut(s) | 7487 |
| BspTNI | GGTCTC | 2 cut(s) | 2764, 6469 |
| BsrBI | CCGCTC | 1 cut(s) | 7034 |
| BsrFI | RCCGGY | 1 cut(s) | 7877 |
| BsrGI | TGTACA | 1 cut(s) | 4761 |
| BssAI | RCCGGY | 1 cut(s) | 7877 |
| BssNI | GRCGYC | 1 cut(s) | 2711 |
| BssSI | CACGAG | 2 cut(s) | 6269, 7358 |
| BssT1I | CCWWGG | 9 cut(s) | 389, 1663, 1674, 2514, 2577, 2774, 6965, 7413, 7650 |
| Bst2BI | CACGAG | 2 cut(s) | 6269, 7358 |
| BstACI | GRCGYC | 1 cut(s) | 2711 |
| BstAFI | CTTAAG | 1 cut(s) | 7487 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 200 |
| BstAUI | TGTACA | 1 cut(s) | 4761 |
| BstBI | TTCGAA | 2 cut(s) | 4787, 4979 |
| BstDSI | CCRYGG | 3 cut(s) | 389, 5092, 6965 |
| BstEII | GGTNACC | 3 cut(s) | 1067, 1922, 7273 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 828, 3823 |
| BstHHI | GCGC | 1 cut(s) | 2784 |
| BstMAI | GTCTC | 9 cut(s) | 11, 2462, 2764, 2786, 2981, 5465, 5960, 6061, 6469 |
| BstNSI | RCATGY | 8 cut(s) | 610, 1817, 3545, 3972, 4706, 5024, 5531, 6074 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3368 |
| BstPI | GGTNACC | 3 cut(s) | 1067, 1922, 7273 |
| BstSFI | CTRYAG | 8 cut(s) | 1592, 3960, 4965, 5280, 5421, 6528, 6695, 7251 |
| BstSLI | GKGCMC | 3 cut(s) | 196, 904, 5608 |
| BstV2I | GAAGAC | 9 cut(s) | 48, 504, 789, 932, 2355, 3368, 7139, 7346, 7848 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 119, 3072, 6452, 7810 |
| BsuI | GTATCC | 2 cut(s) | 144, 5562 |
| BtgI | CCRYGG | 3 cut(s) | 389, 5092, 6965 |
| BtgZI | GCGATG | 2 cut(s) | 1314, 3777 |
| BtsI | GCAGTG | 2 cut(s) | 1686, 6692 |
| BveI | ACCTGC | 2 cut(s) | 4633, 5810 |
| CaiI | CAGNNNCTG | 3 cut(s) | 551, 3356, 6694 |
| CciI | TCATGA | 2 cut(s) | 1554, 3661 |
| CfoI | GCGC | 1 cut(s) | 2784 |
| Cfr10I | RCCGGY | 1 cut(s) | 7877 |
| CseI | GACGC | 3 cut(s) | 2024, 7133, 7787 |
| CsiI | ACCWGGT | 3 cut(s) | 6210, 7117, 7705 |
| DraI | TTTAAA | 7 cut(s) | 220, 502, 2308, 4521, 5146, 6342, 7797 |
| DraIII | CACNNNGTG | 1 cut(s) | 5139 |
| EaeI | YGGCCR | 4 cut(s) | 2574, 3074, 3781, 5130 |
| EciI | GGCGGA | 1 cut(s) | 7510 |
| Ecl136II | GAGCTC | 2 cut(s) | 158, 7791 |
| Eco130I | CCWWGG | 9 cut(s) | 389, 1663, 1674, 2514, 2577, 2774, 6965, 7413, 7650 |
| Eco147I | AGGCCT | 4 cut(s) | 1488, 2513, 3818, 6676 |
| Eco24I | GRGCYC | 3 cut(s) | 160, 6616, 7793 |
| Eco31I | GGTCTC | 2 cut(s) | 2764, 6469 |
| Eco32I | GATATC | 4 cut(s) | 2962, 3646, 6201, 7774 |
| Eco47I | GGWCC | 7 cut(s) | 33, 818, 1100, 1259, 2075, 2608, 5178 |
| Eco53kI | GAGCTC | 2 cut(s) | 158, 7791 |
| Eco57I | CTGAAG | 7 cut(s) | 1227, 2384, 2771, 3495, 5253, 6210, 7860 |
| Eco88I | CYCGRG | 2 cut(s) | 153, 6899 |
| Eco91I | GGTNACC | 3 cut(s) | 1067, 1922, 7273 |
| EcoICRI | GAGCTC | 2 cut(s) | 158, 7791 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 828, 3823 |
| EcoO109I | RGGNCCY | 2 cut(s) | 818, 4735 |
| EcoO65I | GGTNACC | 3 cut(s) | 1067, 1922, 7273 |
| EcoRI | GAATTC | 3 cut(s) | 2203, 3175, 5825 |
| EcoRV | GATATC | 4 cut(s) | 2962, 3646, 6201, 7774 |
| EcoT14I | CCWWGG | 9 cut(s) | 389, 1663, 1674, 2514, 2577, 2774, 6965, 7413, 7650 |
| EcoT22I | ATGCAT | 4 cut(s) | 1962, 3769, 5847, 7915 |
| EcoT38I | GRGCYC | 3 cut(s) | 160, 6616, 7793 |
| ErhI | CCWWGG | 9 cut(s) | 389, 1663, 1674, 2514, 2577, 2774, 6965, 7413, 7650 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3971, 4003 |
| FaqI | GGGAC | 4 cut(s) | 19, 841, 2954, 7304 |
| FauNDI | CATATG | 3 cut(s) | 235, 1368, 4239 |
| FbaI | TGATCA | 3 cut(s) | 2557, 4168, 6165 |
| FblI | GTMKAC | 3 cut(s) | 2589, 4141, 7886 |
| FriOI | GRGCYC | 3 cut(s) | 160, 6616, 7793 |
| GlaI | GCGC | 1 cut(s) | 2783 |
| GsaI | CCCAGC | 3 cut(s) | 384, 614, 7439 |
| GsuI | CTGGAG | 6 cut(s) | 2788, 2975, 3005, 4593, 7111, 7752 |
| HapII | CCGG | 3 cut(s) | 2005, 4556, 7878 |
| HgaI | GACGC | 3 cut(s) | 2024, 7133, 7787 |
| HhaI | GCGC | 1 cut(s) | 2784 |
| Hin1I | GRCGYC | 1 cut(s) | 2711 |
| Hin6I | GCGC | 1 cut(s) | 2782 |
| HinP1I | GCGC | 1 cut(s) | 2782 |
| HincII | GTYRAC | 5 cut(s) | 1194, 1782, 2329, 4142, 7630 |
| HindII | GTYRAC | 5 cut(s) | 1194, 1782, 2329, 4142, 7630 |
| HindIII | AAGCTT | 4 cut(s) | 1894, 2753, 6551, 6935 |
| HpaII | CCGG | 3 cut(s) | 2005, 4556, 7878 |
| Hpy99I | CGWCG | 2 cut(s) | 4143, 7781 |
| HpyCH4IV | ACGT | 4 cut(s) | 292, 2711, 4138, 6390 |
| HpySE526I | ACGT | 4 cut(s) | 292, 2711, 4138, 6390 |
| Hsp92I | GRCGYC | 1 cut(s) | 2711 |
| HspAI | GCGC | 1 cut(s) | 2782 |
| Ksp22I | TGATCA | 3 cut(s) | 2557, 4168, 6165 |
| LguI | GCTCTTC | 2 cut(s) | 2815, 7781 |
| LmnI | GCTCC | 6 cut(s) | 1726, 1805, 2023, 2955, 4558, 7141 |
| MabI | ACCWGGT | 3 cut(s) | 6210, 7117, 7705 |
| MaeII | ACGT | 4 cut(s) | 292, 2711, 4138, 6390 |
| MbiI | CCGCTC | 1 cut(s) | 7034 |
| MfeI | CAATTG | 4 cut(s) | 1841, 2612, 4293, 4509 |
| MhlI | GDGCHC | 6 cut(s) | 160, 196, 904, 5608, 6616, 7793 |
| MlsI | TGGCCA | 4 cut(s) | 2576, 3076, 3783, 5132 |
| MluNI | TGGCCA | 4 cut(s) | 2576, 3076, 3783, 5132 |
| Mox20I | TGGCCA | 4 cut(s) | 2576, 3076, 3783, 5132 |
| Mph1103I | ATGCAT | 4 cut(s) | 1962, 3769, 5847, 7915 |
| MroXI | GAANNNNTTC | 6 cut(s) | 84, 96, 1572, 2696, 3386, 7461 |
| MscI | TGGCCA | 4 cut(s) | 2576, 3076, 3783, 5132 |
| MslI | CAYNNNNRTG | 4 cut(s) | 545, 786, 7894, 7908 |
| Msp20I | TGGCCA | 4 cut(s) | 2576, 3076, 3783, 5132 |
| MspA1I | CMGCKG | 3 cut(s) | 3587, 5384, 6494 |
| MspCI | CTTAAG | 1 cut(s) | 7487 |
| MspI | CCGG | 3 cut(s) | 2005, 4556, 7878 |
| MssI | GTTTAAAC | 1 cut(s) | 6342 |
| MunI | CAATTG | 4 cut(s) | 1841, 2612, 4293, 4509 |
| Mva1269I | GAATGC | 8 cut(s) | 780, 1253, 1383, 1574, 1841, 1962, 6184, 7913 |
| NcoI | CCATGG | 2 cut(s) | 389, 6965 |
| NdeI | CATATG | 3 cut(s) | 235, 1368, 4239 |
| NlaIV | GGNNCC | 9 cut(s) | 35, 819, 1728, 2009, 2336, 3108, 3407, 3872, 4319 |
| NmeAIII | GCCGAG | 1 cut(s) | 4043 |
| NsiI | ATGCAT | 4 cut(s) | 1962, 3769, 5847, 7915 |
| NspI | RCATGY | 8 cut(s) | 610, 1817, 3545, 3972, 4706, 5024, 5531, 6074 |
| NspV | TTCGAA | 2 cut(s) | 4787, 4979 |
| OliI | CACNNNNGTG | 2 cut(s) | 545, 7894 |
| PaeI | GCATGC | 2 cut(s) | 4706, 5531 |
| PaeR7I | CTCGAG | 1 cut(s) | 153 |
| PagI | TCATGA | 2 cut(s) | 1554, 3661 |
| PaqCI | CACCTGC | 2 cut(s) | 4633, 5810 |
| PceI | AGGCCT | 4 cut(s) | 1488, 2513, 3818, 6676 |
| PciI | ACATGT | 2 cut(s) | 1813, 3541 |
| PciSI | GCTCTTC | 2 cut(s) | 2815, 7781 |
| PctI | GAATGC | 8 cut(s) | 780, 1253, 1383, 1574, 1841, 1962, 6184, 7913 |
| PdmI | GAANNNNTTC | 6 cut(s) | 84, 96, 1572, 2696, 3386, 7461 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1109, 2072 |
| PfoI | TCCNGGA | 2 cut(s) | 2010, 2952 |
| PmeI | GTTTAAAC | 1 cut(s) | 6342 |
| PpuMI | RGGWCCY | 1 cut(s) | 818 |
| PscI | ACATGT | 2 cut(s) | 1813, 3541 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3368 |
| PsiI | TTATAA | 3 cut(s) | 2090, 2363, 3824 |
| Psp124BI | GAGCTC | 2 cut(s) | 160, 7793 |
| Psp5II | RGGWCCY | 1 cut(s) | 818 |
| PspEI | GGTNACC | 3 cut(s) | 1067, 1922, 7273 |
| PspFI | CCCAGC | 3 cut(s) | 380, 610, 7435 |
| PspN4I | GGNNCC | 9 cut(s) | 35, 819, 1728, 2009, 2336, 3108, 3407, 3872, 4319 |
| PspPPI | RGGWCCY | 1 cut(s) | 818 |
| PspXI | VCTCGAGB | 1 cut(s) | 153 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4818, 4850 |
| PstI | CTGCAG | 2 cut(s) | 5425, 6699 |
| PstNI | CAGNNNCTG | 3 cut(s) | 551, 3356, 6694 |
| PvuII | CAGCTG | 2 cut(s) | 3587, 6494 |
| RseI | CAYNNNNRTG | 4 cut(s) | 545, 786, 7894, 7908 |
| SacI | GAGCTC | 2 cut(s) | 160, 7793 |
| SalI | GTCGAC | 1 cut(s) | 4140 |
| SapI | GCTCTTC | 2 cut(s) | 2815, 7781 |
| ScaI | AGTACT | 5 cut(s) | 116, 2175, 2494, 4669, 7000 |
| SduI | GDGCHC | 6 cut(s) | 160, 196, 904, 5608, 6616, 7793 |
| SexAI | ACCWGGT | 3 cut(s) | 6210, 7117, 7705 |
| SfcI | CTRYAG | 8 cut(s) | 1592, 3960, 4965, 5280, 5421, 6528, 6695, 7251 |
| Sfr274I | CTCGAG | 1 cut(s) | 153 |
| SfuI | TTCGAA | 2 cut(s) | 4787, 4979 |
| SinI | GGWCC | 7 cut(s) | 33, 818, 1100, 1259, 2075, 2608, 5178 |
| SlaI | CTCGAG | 1 cut(s) | 153 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 545, 786, 7894, 7908 |
| SmlI | CTYRAG | 8 cut(s) | 153, 1872, 2250, 4145, 4739, 6678, 7487, 7547 |
| SmoI | CTYRAG | 8 cut(s) | 153, 1872, 2250, 4145, 4739, 6678, 7487, 7547 |
| SpeI | ACTAGT | 1 cut(s) | 6229 |
| SphI | GCATGC | 2 cut(s) | 4706, 5531 |
| SseBI | AGGCCT | 4 cut(s) | 1488, 2513, 3818, 6676 |
| SspI | AATATT | 9 cut(s) | 1174, 1301, 2416, 2928, 3041, 4602, 5271, 6247, 6506 |
| SstI | GAGCTC | 2 cut(s) | 160, 7793 |
| StuI | AGGCCT | 4 cut(s) | 1488, 2513, 3818, 6676 |
| StyI | CCWWGG | 9 cut(s) | 389, 1663, 1674, 2514, 2577, 2774, 6965, 7413, 7650 |
| TaiI | ACGT | 4 cut(s) | 295, 2714, 4141, 6393 |
| TauI | GCSGC | 2 cut(s) | 781, 5384 |
| TspGWI | ACGGA | 4 cut(s) | 94, 1953, 4427, 5698 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1109, 2072 |
| Vha464I | CTTAAG | 1 cut(s) | 7487 |
| VneI | GTGCAC | 2 cut(s) | 192, 5604 |
| VpaK11BI | GGWCC | 7 cut(s) | 33, 818, 1100, 1259, 2075, 2608, 5178 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 828, 3823 |
| XbaI | TCTAGA | 2 cut(s) | 3797, 5593 |
| XceI | RCATGY | 8 cut(s) | 610, 1817, 3545, 3972, 4706, 5024, 5531, 6074 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1110 |
| XhoI | CTCGAG | 1 cut(s) | 153 |
| XmaJI | CCTAGG | 1 cut(s) | 2774 |
| XmiI | GTMKAC | 3 cut(s) | 2589, 4141, 7886 |
| XmnI | GAANNNNTTC | 6 cut(s) | 84, 96, 1572, 2696, 3386, 7461 |
| ZraI | GACGTC | 1 cut(s) | 2712 |
| ZrmI | AGTACT | 5 cut(s) | 116, 2175, 2494, 4669, 7000 |
| Zsp2I | ATGCAT | 4 cut(s) | 1962, 3769, 5847, 7915 |